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Review

Molecular dynamics simulations: advances and applications

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Pages 37-47 | Published online: 19 Nov 2015

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Venkataraghavan Ragunathan, K. Chithra, C. Shivanika & Meenambiga Setti Sudharsan. (2022) Modelling and targeting mitochondrial protein tyrosine phosphatase 1: a computational approach. In Silico Pharmacology 10:1.
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A. V. Khomenko, M. V. Zakharov & M. O. Gorpinchenko. (2022) Atomistic modeling of formation and friction of materials with nanodimensional surfaces. Journal of Physical Studies 26:1.
Crossref
R. Gandhimathi & S. Anbuselvi. (2022) In silico Molecular Docking, ADMET Property, Molecular Dynamic Simulation Evaluation of N,N′-bis(2-Hydroxybenzylidene)-1,2-diaminobenzene and its Metal Complexes against SARS-CoV-2. Asian Journal of Chemistry 34:10, pages 2573-2582.
Crossref
David Aranda-Garcia, Mariona Torrens-Fontanals, Brian Medel-Lacruz, Marta Lopez-Balastegui, Alejandro Peralta-García, Miguel Dieguez-Eceolaza, Adrian Morales-Pastor, David Sotillo-Núñez, Davide Abbondandolo, Tomasz Maciej Stępniewski & Jana Selent. 2022. Comprehensive Pharmacology. Comprehensive Pharmacology 115 134 .
Rajneet Kaur Bijral, Jatinder Manhas & Vinod Sharma. 2022. Recent Innovations in Computing. Recent Innovations in Computing 427 437 .
Azahara Doncel-Giménez, Joaquín Calbo, Enrique Ortí & Juan Aragó. 2022. Supramolecular Assemblies Based on Electrostatic Interactions. Supramolecular Assemblies Based on Electrostatic Interactions 341 384 .
Joseph P. Heindel & Sotiris S. Xantheas. (2021) Molecular Dynamics Driven by the Many-Body Expansion (MBE-MD). Journal of Chemical Theory and Computation 17:12, pages 7341-7352.
Crossref
Surl-Hee Ahn, Anupam A. Ojha, Rommie E. Amaro & J. Andrew McCammon. (2021) Gaussian-Accelerated Molecular Dynamics with the Weighted Ensemble Method: A Hybrid Method Improves Thermodynamic and Kinetic Sampling. Journal of Chemical Theory and Computation 17:12, pages 7938-7951.
Crossref
André Fischer & Martin Smieško. (2021) A Conserved Allosteric Site on Drug-Metabolizing CYPs: A Systematic Computational Assessment. International Journal of Molecular Sciences 22:24, pages 13215.
Crossref
Mahdi Ghorbani, Samarjeet Prasad, Jeffery B. Klauda & Bernard R. Brooks. (2021) Variational embedding of protein folding simulations using Gaussian mixture variational autoencoders. The Journal of Chemical Physics 155:19, pages 194108.
Crossref
Tomasz Róg, Mykhailo Girych & Alex Bunker. (2021) Mechanistic Understanding from Molecular Dynamics in Pharmaceutical Research 2: Lipid Membrane in Drug Design. Pharmaceuticals 14:10, pages 1062.
Crossref
Stephen B. Burnside, Kamil Pasieczynski, Amin Zarareh, Mubbashar Mehmood, Yong Qing Fu & Baixin Chen. (2021) Simulations of surface acoustic wave interactions on a sessile droplet using a three-dimensional multiphase lattice Boltzmann model. Physical Review E 104:4.
Crossref
Anna Helena Mazurek, Łukasz Szeleszczuk & Tomasz Gubica. (2021) Application of Molecular Dynamics Simulations in the Analysis of Cyclodextrin Complexes. International Journal of Molecular Sciences 22:17, pages 9422.
Crossref
Aditya K. Padhi, Soumya Lipsa Rath & Timir Tripathi. (2021) Accelerating COVID-19 Research Using Molecular Dynamics Simulation. The Journal of Physical Chemistry B 125:32, pages 9078-9091.
Crossref
Genís Bayarri, Adam Hospital & Modesto Orozco. (2021) 3dRS, a Web-Based Tool to Share Interactive Representations of 3D Biomolecular Structures and Molecular Dynamics Trajectories. Frontiers in Molecular Biosciences 8.
Crossref
Mateus A. Gonçalves, Arismar M. G. Júnior, Elaine F. F. da Cunha & Teodorico C. Ramalho. (2021) Investigating an efficient and accurate protocol for sampling structures from molecular dynamics simulations: a close look by different wavelet families. Theoretical Chemistry Accounts 140:8.
Crossref
Nitin Chitranshi, Ashutosh Kumar, Samran Sheriff, Veer Gupta, Angela Godinez, Danit Saks, Soumalya Sarkar, Ting Shen, Mehdi Mirzaei, Devaraj Basavarajappa, Morteza Abyadeh, Sachin K. Singh, Kamal Dua, Kam Y. J. Zhang, Stuart L. Graham & Vivek Gupta. (2021) Identification of Novel Cathepsin B Inhibitors with Implications in Alzheimer’s Disease: Computational Refining and Biochemical Evaluation. Cells 10:8, pages 1946.
Crossref
Aman Jindal, Vaishali Arunachalam & Sukumaran Vasudevan. (2021) Search for H-Bonded Motifs in Liquid Ethylene Glycol Using a Machine Learning Strategy. The Journal of Physical Chemistry B 125:22, pages 5909-5919.
Crossref
Alejandro Soto-Ospina, Pedronel Araque Marín, Gabriel Bedoya, Diego Sepulveda-Falla & Andrés Villegas Lanau. (2021) Protein Predictive Modeling and Simulation of Mutations of Presenilin-1 Familial Alzheimer’s Disease on the Orthosteric Site. Frontiers in Molecular Biosciences 8.
Crossref
Ai Shinobu, Chigusa Kobayashi, Yasuhiro Matsunaga & Yuji Sugita. (2021) Coarse-Grained Modeling of Multiple Pathways in Conformational Transitions of Multi-Domain Proteins. Journal of Chemical Information and Modeling 61:5, pages 2427-2443.
Crossref
Anna Helena Mazurek, Łukasz Szeleszczuk & Dariusz Maciej Pisklak. (2021) A Review on Combination of Ab Initio Molecular Dynamics and NMR Parameters Calculations. International Journal of Molecular Sciences 22:9, pages 4378.
Crossref
Ki Hyun Nam. (2021) Molecular Dynamics—From Small Molecules to Macromolecules. International Journal of Molecular Sciences 22:7, pages 3761.
Crossref
Shendi Suryana, Mutakin, Yudi Rosandi & Aliya Nur Hasanah. (2021) An Update on Molecularly Imprinted Polymer Design through a Computational Approach to Produce Molecular Recognition Material with Enhanced Analytical Performance. Molecules 26:7, pages 1891.
Crossref
Richard S. Hong, Eric J. Chan, Leslie Vogt-Maranto, Alessandra Mattei, Ahmad Y. Sheikh & Mark E. Tuckerman. (2021) Insights into the Polymorphic Structures and Enantiotropic Layer-Slip Transition in Paracetamol Form III from Enhanced Molecular Dynamics. Crystal Growth & Design 21:2, pages 886-896.
Crossref
Neelaveni Thangavel, Mohammad Al Bratty, Hassan Ahmad Al Hazmi, Asim Najmi & Reem Othman Ali Alaqi. (2021) Molecular Docking and Molecular Dynamics Aided Virtual Search of OliveNet™ Directory for Secoiridoids to Combat SARS-CoV-2 Infection and Associated Hyperinflammatory Responses. Frontiers in Molecular Biosciences 7.
Crossref
Milica Radan, Jelena Bošković, Vladimir Dobričić, Olivera Čudina & Katarina Nikolić. (2021) Current computer-aided drug design methodologies in discovery of novel drug candidates for neuropsychiatric and inflammatory diseases. Arhiv za farmaciju 71:4, pages 225-256.
Crossref
Hyeon-Ho Kim, Yong-Chan Kim, Kiwon Kim, An-Dang Kim & Byung-Hoon Jeong. (2020) Novel Polymorphisms and Genetic Features of the Prion Protein Gene (PRNP) in Cats, Hosts of Feline Spongiform Encephalopathy. Genes 12:1, pages 13.
Crossref
Sadra Kashefolgheta, Marina P. Oliveira, Salomé R. Rieder, Bruno A. C. Horta, William E. AcreeJr.Jr. & Philippe H. Hünenberger. (2020) Evaluating Classical Force Fields against Experimental Cross-Solvation Free Energies. Journal of Chemical Theory and Computation 16:12, pages 7556-7580.
Crossref
Shu-Yu Chen & Martin Zacharias. (2020) How Mutations Perturb γ-Secretase Active Site Studied by Free Energy Simulations. ACS Chemical Neuroscience 11:20, pages 3321-3332.
Crossref
Anna Helena Mazurek, Łukasz Szeleszczuk, Thomas Simonson & Dariusz Maciej Pisklak. (2020) Application of Various Molecular Modelling Methods in the Study of Estrogens and Xenoestrogens. International Journal of Molecular Sciences 21:17, pages 6411.
Crossref
Mariona Torrens-Fontanals, Tomasz Maciej Stepniewski, David Aranda-García, Adrián Morales-Pastor, Brian Medel-Lacruz & Jana Selent. (2020) How Do Molecular Dynamics Data Complement Static Structural Data of GPCRs. International Journal of Molecular Sciences 21:16, pages 5933.
Crossref
Daniel R. Roe & Bernard R. Brooks. (2020) A protocol for preparing explicitly solvated systems for stable molecular dynamics simulations. The Journal of Chemical Physics 153:5, pages 054123.
Crossref
Jackson Loper, Guangyao Zhou & Stuart Geman. (2020) Capacities and efficient computation of first-passage probabilities. Physical Review E 102:2.
Crossref
Abhaysinh Gaikwad, Jahlani Odujole & Salil Desai. (2020) Atomistic investigation of process parameter variations on material deformation behavior in nanoimprint lithography of gold. Precision Engineering 64, pages 7-19.
Crossref
Milica Markovic, Shimon Ben-Shabat & Arik Dahan. (2020) Computational Simulations to Guide Enzyme-Mediated Prodrug Activation. International Journal of Molecular Sciences 21:10, pages 3621.
Crossref
Mayara dos Santos Maia, Joanda Paolla Raimundo e Silva, Thaís Amanda de Lima Nunes, Julyanne Maria Saraiva de Sousa, Gabriela Cristina Soares Rodrigues, Alex France Messias Monteiro, Josean Fechine Tavares, Klinger Antonio da Franca Rodrigues, Francisco Jaime B. Mendonça-Junior, Luciana Scotti & Marcus Tullius Scotti. (2020) Virtual Screening and the In Vitro Assessment of the Antileishmanial Activity of Lignans. Molecules 25:10, pages 2281.
Crossref
Ryoko Hatakeyama & Akira Shimizu. (2020) Entropic quantum machine. Physical Review B 101:19.
Crossref
Erick López-Chávez, Gerardo Pérez-Hernández, Felipe Aparicio & Salomón J. Alas. (2020) On the Thermal Stability of O 6 -Methylguanine-DNA Methyltransferase from Archaeon Pyrococcus kodakaraensis by Molecular Dynamics Simulations . Journal of Chemical Information and Modeling 60:4, pages 2138-2154.
Crossref
Ying Li, Bin Xue & Yi Cao. (2020) 100th Anniversary of Macromolecular Science Viewpoint: Synthetic Protein Hydrogels. ACS Macro Letters 9:4, pages 512-524.
Crossref
Nathan M. Lim, Meghan Osato, Gregory L. Warren & David L. Mobley. (2020) Fragment Pose Prediction Using Non-equilibrium Candidate Monte Carlo and Molecular Dynamics Simulations. Journal of Chemical Theory and Computation 16:4, pages 2778-2794.
Crossref
Krami Al Mehdi, Benhnini Fouad, Elkarhat Zouhair, Belkady Boutaina, Naasse Yassine, Ait El Cadi Chaimaa, Sifeddine Najat, Rouba Hassan, Roky Rachida, Barakat Abdelhamid & Nahili Halima. (2019) Molecular Modelling and Dynamics Study of nsSNP in STXBP1 Gene in Early Infantile Epileptic Encephalopathy Disease. BioMed Research International 2019, pages 1-14.
Crossref
Pratishtha Singh, Anjali Ganjiwale, Allyn C. Howlett & Sudha M. Cowsik. (2019) Molecular Interaction between Distal C-Terminal Domain of the CB 1 Cannabinoid Receptor and Cannabinoid Receptor Interacting Proteins (CRIP1a/CRIP1b) . Journal of Chemical Information and Modeling 59:12, pages 5294-5303.
Crossref
Mireia Segado, May Nyman & Carles Bo. (2019) Aggregation Patterns in Low- and High-Charge Anions Define Opposite Solubility Trends. The Journal of Physical Chemistry B 123:49, pages 10505-10513.
Crossref
Soukaina Essadssi, Al Mehdi Krami, Lamiae Elkhattabi, Zouhair Elkarhat, Ghita Amalou, Houria Abdelghaffar, Hassan Rouba & Abdelhamid Barakat. (2019) Computational Analysis of nsSNPs of ADA Gene in Severe Combined Immunodeficiency Using Molecular Modeling and Dynamics Simulation . Journal of Immunology Research 2019, pages 1-14.
Crossref
Sayuri Pacheco, Jesse C. Kaminsky, Iurii K. Kochnev & Jacob D. Durrant. (2019) PCAViz: An Open-Source Python/JavaScript Toolkit for Visualizing Molecular Dynamics Simulations in the Web Browser. Journal of Chemical Information and Modeling 59:10, pages 4087-4092.
Crossref
Pedro Maximiano, Luísa Durães & Pedro Simões. (2019) Overview of Multiscale Molecular Modeling and Simulation of Silica Aerogels. Industrial & Engineering Chemistry Research 58:41, pages 18905-18929.
Crossref
Angélica Jiménez Rosales. (2019) Los retos actuales en la ingeniería de proteínas. CIENCIA ergo sum 26:3, pages 1-11.
Crossref
Maryam Yari, Mahboobeh Eslami, Mohammad Bagher Ghoshoon, Navid Nezafat & Younes Ghasemi. (2019) Decreasing the immunogenicity of Erwinia chrysanthemi asparaginase via protein engineering: computational approach. Molecular Biology Reports 46:5, pages 4751-4761.
Crossref
Giulia Oliveira Timo, Rodrigo Souza Silva Valle dos Reis, Adriana Françozo de Melo, Thales Viana Labourdette Costa, Pérola de Oliveira Magalhães & Mauricio Homem-de-Mello. (2019) Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review. Pharmaceuticals 12:3, pages 135.
Crossref
Georgia Karataraki, Andreas Sapalidis, Elena Tocci & Anastasios Gotzias. (2019) Molecular Dynamics of Water Embedded Carbon Nanocones: Surface Waves Observation. Computation 7:3, pages 50.
Crossref
Ercheng Wang, Huiyong Sun, Junmei Wang, Zhe Wang, Hui Liu, John Z. H. Zhang & Tingjun Hou. (2019) End-Point Binding Free Energy Calculation with MM/PBSA and MM/GBSA: Strategies and Applications in Drug Design. Chemical Reviews 119:16, pages 9478-9508.
Crossref
Adam K. Sieradzan, Małgorzata Bogunia, Paulina Mech, Robert Ganzynkowicz, Artur Giełdoń, Adam Liwo & Mariusz Makowski. (2019) Introduction of Phosphorylated Residues into the UNRES Coarse-Grained Model: Toward Modeling of Signaling Processes. The Journal of Physical Chemistry B 123:27, pages 5721-5729.
Crossref
Filipa Pires, Vananélia P. N. Geraldo, Bárbara Rodrigues, António de Granada-Flor, Rodrigo F. M. de Almeida, Osvaldo N. OliveiraJr.Jr., Bruno L. Victor, Miguel Machuqueiro & Maria Raposo. (2019) Evaluation of EGCG Loading Capacity in DMPC Membranes. Langmuir 35:20, pages 6771-6781.
Crossref
Kumaraswamy Naidu Chitrala, Xiaoming Yang, Brandon Busbee, Narendra P. Singh, Laura Bonati, Yongna Xing, Prakash Nagarkatti & Mitzi Nagarkatti. (2019) Computational prediction and in vitro validation of VEGFR1 as a novel protein target for 2,3,7,8-tetrachlorodibenzo-p-dioxin. Scientific Reports 9:1.
Crossref
Stefan Bruckner. (2019) Dynamic Visibility‐Driven Molecular Surfaces. Computer Graphics Forum 38:2, pages 317-329.
Crossref
Marisa L. Martin-Fernandez, David T. Clarke, Selene K. Roberts, Laura C. Zanetti-Domingues & Francesco L. Gervasio. (2019) Structure and Dynamics of the EGF Receptor as Revealed by Experiments and Simulations and Its Relevance to Non-Small Cell Lung Cancer. Cells 8:4, pages 316.
Crossref
Alireza Moradzadeh & Narayana R. Aluru. (2019) Transfer-Learning-Based Coarse-Graining Method for Simple Fluids: Toward Deep Inverse Liquid-State Theory. The Journal of Physical Chemistry Letters 10:6, pages 1242-1250.
Crossref
Sigbjørn Løland Bore, Hima Bindu Kolli, Toshihiro Kawakatsu, Giuseppe Milano & Michele Cascella. (2019) Mesoscale Electrostatics Driving Particle Dynamics in Nonhomogeneous Dielectrics. Journal of Chemical Theory and Computation 15:3, pages 2033-2041.
Crossref
Joshua G. Pemberton & Tamas Balla. 2019. Protein Reviews – Purinergic Receptors. Protein Reviews – Purinergic Receptors 77 137 .
Mansi Arora, Ragothaman M. Yennamalli & Taner Z. Sen. (2018) Application of Molecular Simulations Toward Understanding Cellulase Mechanisms. BioEnergy Research 11:4, pages 850-867.
Crossref
Nan Nan, Dongqing Si & Guohui Hu. (2018) Nanoscale cavitation in perforation of cellular membrane by shock-wave induced nanobubble collapse. The Journal of Chemical Physics 149:7, pages 074902.
Crossref
Juan M.R. Albano, Eneida de Paula & Monica Pickholz. 2018. Molecular Dynamics. Molecular Dynamics.
Damián A. Grillo, Juan M. R. Albano, Esteban E. Mocskos, Julio C. Facelli, Mónica Pickholz & Marta B. Ferraro. (2018) Mechanical properties of drug loaded diblock copolymer bilayers: A molecular dynamics study. The Journal of Chemical Physics 148:21.
Crossref
K. Savithri, B. C. Vasantha Kumar, H. K. Vivek & H. D. Revanasiddappa. (2018) Synthesis and Characterization of Cobalt(III) and Copper(II) Complexes of 2-((E)-(6-Fluorobenzo[d]thiazol-2-ylimino) methyl)-4-chlorophenol: DNA Binding and Nuclease Studies—SOD and Antimicrobial Activities. International Journal of Spectroscopy 2018, pages 1-15.
Crossref
Ari Hardianto, Fei Liu & Shoba Ranganathan. (2018) Molecular Dynamics Pinpoint the Global Fluorine Effect in Balanoid Binding to PKCε and PKA. Journal of Chemical Information and Modeling 58:2, pages 511-519.
Crossref
Ankita Punetha, Payel Sarkar, Siddharth Nimkar, Himanshu Sharma, Yoganand KNR & Siranjeevi Nagaraj. 2018. Bioinformatics: Sequences, Structures, Phylogeny. Bioinformatics: Sequences, Structures, Phylogeny 191 253 .
Neelima Gupta, Prateek Pandya & Seema Verma. 2019. Multi-Target Drug Design Using Chem-Bioinformatic Approaches. Multi-Target Drug Design Using Chem-Bioinformatic Approaches 27 50 .
Michael Feig, Isseki Yu, Po-hung Wang, Grzegorz Nawrocki & Yuji Sugita. (2017) Crowding in Cellular Environments at an Atomistic Level from Computer Simulations. The Journal of Physical Chemistry B 121:34, pages 8009-8025.
Crossref
Damián A. Grillo, Juan M. R. Albano, Esteban E. Mocskos, Julio C. Facelli, Mónica Pickholz & Marta B. Ferraro. (2017) Diblock copolymer bilayers as model for polymersomes: A coarse grain approach. The Journal of Chemical Physics 146:24.
Crossref
Allan S. Pires, William F. Porto, Octavio L. Franco & Sérgio A. Alencar. (2017) In silico analyses of deleterious missense SNPs of human apolipoprotein E3. Scientific Reports 7:1.
Crossref
Carla Schmidt, Jamie A. Macpherson, Andy M. Lau, Ken Wei Tan, Franca Fraternali & Argyris Politis. (2017) Surface Accessibility and Dynamics of Macromolecular Assemblies Probed by Covalent Labeling Mass Spectrometry and Integrative Modeling. Analytical Chemistry 89:3, pages 1459-1468.
Crossref
Yee Siew Choong, Yie Vern Lee, Jia Xin Soong, Cheh Tat Law & Yee Ying Lim. 2017. Recombinant Antibodies for Infectious Diseases. Recombinant Antibodies for Infectious Diseases 221 243 .
Ivan Evangelista do Vale Coelho, Denise Costa Arruda & Alex Gutterres Taranto. (2016) In silico studies of the interaction between BRN2 protein and MORE DNA. Journal of Molecular Modeling 22:9.
Crossref
Yan Li & Zigang Dong. (2016) Effect of Clustering Algorithm on Establishing Markov State Model for Molecular Dynamics Simulations. Journal of Chemical Information and Modeling 56:6, pages 1205-1215.
Crossref