Citations (188)
Keep up to date with the latest research on this topic with citation updates for this article.
Read on this site (10)
Keiichi Sumida, Khyobeni Mozhui, Xiaoyu Liang, Yamini Mallisetty, Zhongji Han & Csaba P. Kovesdy. (2023) Association of DNA methylation signatures with premature ageing and cardiovascular death in patients with end-stage kidney disease: a pilot epigenome-wide association study. Epigenetics 18:1.
Read now
Read now
Dorothea Seiler Vellame, Gemma Shireby, Ailsa MacCalman, Emma L Dempster, Joe Burrage, Tyler Gorrie-Stone, Leonard S Schalkwyk, Jonathan Mill & Eilis Hannon. (2023) Uncertainty quantification of reference-based cellular deconvolution algorithms. Epigenetics 18:1.
Read now
Read now
Hongdong Li, Fengle Jiang, Yuhui Du, Na Li, Zhihong Chen, Hao Cai, You Guo & Guini Hong. (2022) Identification of differential DNA methylation alterations of ovarian cancer in peripheral whole blood based on within-sample relative methylation orderings. Epigenetics 17:3, pages 314-326.
Read now
Read now
Andrei L. Turinsky, Darci T. Butcher, Sanaa Choufani, Rosanna Weksberg & Michael Brudno. (2019) Don’t brush off buccal data heterogeneity. Epigenetics 14:2, pages 109-117.
Read now
Read now
Andres Cardenas, Catherine Allard, Myriam Doyon, E. Andres Houseman, Kelly M. Bakulski, Patrice Perron, Luigi Bouchard & Marie-France Hivert. (2016) Validation of a DNA methylation reference panel for the estimation of nucleated cells types in cord blood. Epigenetics 11:11, pages 773-779.
Read now
Read now
Kristina Gervin, Christian Magnus Page, Hans Christian D. Aass, Michelle A. Jansen, Heidi Elisabeth Fjeldstad, Bettina Kulle Andreassen, Liesbeth Duijts, Joyce B. van Meurs, Menno C. van Zelm, Vincent W. Jaddoe, Hedvig Nordeng, Gunn Peggy Knudsen, Per Magnus, Wenche Nystad, Anne Cathrine Staff, Janine F. Felix & Robert Lyle. (2016) Cell type specific DNA methylation in cord blood: A 450K-reference data set and cell count-based validation of estimated cell type composition. Epigenetics 11:9, pages 690-698.
Read now
Read now
Chong Wu, Ellen W. Demerath, James S. Pankow, Jan Bressler, Myriam Fornage, Megan L. Grove, Wei Chen & Weihua Guan. (2016) Imputation of missing covariate values in epigenome-wide analysis of DNA methylation data. Epigenetics 11:2, pages 132-139.
Read now
Read now
Lissette Delgado-Cruzata, Neomi Vin-Raviv, Parisa Tehranifar, Julie Flom, Diane Reynolds, Karina Gonzalez, Regina M Santella & Mary Beth Terry. (2014) Correlations in global DNA methylation measures in peripheral blood mononuclear cells and granulocytes. Epigenetics 9:11, pages 1504-1510.
Read now
Read now
Scott M Langevin, E Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Heather H Nelson, Margaret R Karagas, Carmen J Marsit, John K Wiencke & Karl T Kelsey. (2014) Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients. Epigenetics 9:6, pages 884-895.
Read now
Read now
Molly L Kile, E Andres Houseman, Andrea A Baccarelli, Quazi Quamruzzaman, Mahmuder Rahman, Golam Mostofa, Andres Cardenas, Robert O Wright & David C Christiani. (2014) Effect of prenatal arsenic exposure on DNA methylation and leukocyte subpopulations in cord blood. Epigenetics 9:5, pages 774-782.
Read now
Read now
Articles from other publishers (178)
Meysam Ramezani, Mahsa Zobeiry, Shahrokh Abdolahi, Behzad Hatami, Mohammad Reza Zali & Kaveh Baghaei. (2023) A crosstalk between epigenetic modulations and non-alcoholic fatty liver disease progression. Pathology - Research and Practice 251, pages 154809.
Crossref
Crossref
Avshalom Caspi, Gemma Shireby, Jonathan Mill, Terrie E. Moffitt, Karen Sugden & Eilis Hannon. (2023) Accelerated pace of aging in schizophrenia: Five case-control studies. Biological Psychiatry.
Crossref
Crossref
Wenqin Ding, Yuxiang Xu, Anthony J. Kondracki & Ying Sun. (2023) Childhood adversity and accelerated reproductive events: a systematic review and meta-analysis. American Journal of Obstetrics and Gynecology.
Crossref
Crossref
Parnian Kheirkhah Rahimabad, A. Daniel Jones, Hongmei Zhang, Su Chen, Yu Jiang, Susan Ewart, John W. Holloway, Hasan Arshad, Shakiba Eslamimehr, Robert Bruce & Wilfried Karmaus. (2023) Polymorphisms in Glutathione S-Transferase (GST) Genes Modify the Effect of Exposure to Maternal Smoking Metabolites in Pregnancy and Offspring DNA Methylation. Genes 14:8, pages 1644.
Crossref
Crossref
Samantha Aurich, Luise Müller, Peter Kovacs & Maria Keller. (2023) Implication of DNA methylation during lifestyle mediated weight loss. Frontiers in Endocrinology 14.
Crossref
Crossref
Dylan J. Kiltschewskij, William R. Reay, Michael P. Geaghan, Joshua R. Atkins, Alexandre Xavier, Xiajie Zhang, Oliver J. Watkeys, Vaughan J. Carr, Rodney J. Scott, Melissa J. Green & Murray J. Cairns. (2023) Alteration of DNA Methylation and Epigenetic Scores Associated with Features of Schizophrenia and Common Variant Genetic Risk. Biological Psychiatry.
Crossref
Crossref
Emily Nissen, Alexander Reiner, Simin Liu, Robert B. Wallace, Annette M. Molinaro, Lucas A. Salas, Brock C. Christensen, John K. Wiencke, Devin C. Koestler & Karl T. Kelsey. (2023) Assessment of immune cell profiles among post-menopausal women in the Women’s Health Initiative using DNA methylation-based methods. Clinical Epigenetics 15:1.
Crossref
Crossref
Shu-Wen Hao, Tao-Ran Li, Chao Han, Ying Han & Yan-Ning Cai. (2023) Associations Between Levels of Peripheral NCAPH2 Promoter Methylation and Different Stages of Alzheimer’s Disease: A Cross-Sectional Study. Journal of Alzheimer's Disease 92:3, pages 899-909.
Crossref
Crossref
Abner T. Apsley, Laura Etzel, Waylon J. Hastings, Christine C. Heim, Jennie G. Noll, Kieran J. O’Donnell, Hannah M. C. Schreier, Chad E. Shenk, Qiaofeng Ye & Idan Shalev. (2023) Investigating the effects of maltreatment and acute stress on the concordance of blood and DNA methylation methods of estimating immune cell proportions. Clinical Epigenetics 15:1.
Crossref
Crossref
Yung-Che Chen, I-Chun Lin, Mao-Chang Su, Po-Yuan Hsu, Chang-Chun Hsiao, Te-Yao Hsu, Chia-Wei Liou, Yu-Mu Chen, Chien-Hung Chin, Ting-Ya Wang, Jen-Chieh Chang, Yong-Yong Lin, Chiu-Ping Lee & Meng-Chih Lin. (2023) Autophagy impairment in patients with obstructive sleep apnea modulates intermittent hypoxia-induced oxidative stress and cell apoptosis via hypermethylation of the ATG5 gene promoter region. European Journal of Medical Research 28:1.
Crossref
Crossref
Jennifer A. Sumner, Xu Gao, Simone Gambazza, Christian K. Dye, Natalie L. Colich, Andrea A. Baccarelli, Monica Uddin & Katie A. McLaughlin. (2023) Stressful Life Events and Accelerated Biological Aging Over Time in Youths. Psychoneuroendocrinology, pages 106058.
Crossref
Crossref
Chiara Vancheri, Elena Morini, Francesca Romana Prandi, Francesco Barillà, Francesco Romeo, Giuseppe Novelli & Francesca Amati. (2023) Downregulation of Circulating Hsa-miR-200c-3p Correlates with Dyslipidemia in Patients with Stable Coronary Artery Disease. International Journal of Molecular Sciences 24:2, pages 1112.
Crossref
Crossref
Junya Yan, Xiaowen Wu, Yanyan Zhu & Shundong Cang. (2023) Genome-wide DNA methylation profile analysis identifies an individualized predictive signature for melanoma immune response. Journal of Cancer Research and Clinical Oncology 149:1, pages 343-356.
Crossref
Crossref
Rutu Rathod, Hongmei Zhang, Wilfried Karmaus, Susan Ewart, Fawaz Mzayek, S. Hasan Arshad & John W. Holloway. (2022) Association of childhood BMI trajectory with post-adolescent and adult lung function is mediated by pre-adolescent DNA methylation. Respiratory Research 23:1.
Crossref
Crossref
Rebecca G. Reed, Judith E. Carroll, Anna L. Marsland & Stephen B. Manuck. (2022) DNA methylation-based measures of biological aging and cognitive decline over 16-years: preliminary longitudinal findings in midlife. Aging.
Crossref
Crossref
Robert Flynn, Sam Washer, Aaron R Jeffries, Alexandria Andrayas, Gemma Shireby, Meena Kumari, Leonard C Schalkwyk, Jonathan Mill & Eilis Hannon. (2022) Evaluation of nanopore sequencing for epigenetic epidemiology: a comparison with DNA methylation microarrays. Human Molecular Genetics 31:18, pages 3181-3190.
Crossref
Crossref
Rui Miao, Qi Dang, Jie Cai, Hai-Hui Huang, Sheng-Li Xie & Yong Liang. (2022) Sparse principal component analysis based on genome network for correcting cell type heterogeneity in epigenome-wide association studies. Medical & Biological Engineering & Computing 60:9, pages 2601-2618.
Crossref
Crossref
Heather H Nelson, Emma Contestabile, DeVon Hunter-Schlichting, Devin Koestler, Michael Pawlita, Tim Waterboer, Brock C Christensen, Curtis L Petersen, Jeffrey S Miller & Karl T Kelsey. (2022) Human cytomegalovirus alters immune cell profile with potential implications for patient survival in head and neck cancer. Carcinogenesis 43:5, pages 430-436.
Crossref
Crossref
Jerry Guintivano, Karolina A. Aberg, Shaunna L. Clark, David R. Rubinow, Patrick F. Sullivan, Samantha Meltzer-Brody & Edwin J. C. G. van den Oord. (2022) Transcriptome-wide association study for postpartum depression implicates altered B-cell activation and insulin resistance. Molecular Psychiatry 27:6, pages 2858-2867.
Crossref
Crossref
Stephanie Kim, Shana M. White, Elizabeth G. Radke & Jeffry L. Dean. (2022) Harmonization of transcriptomic and methylomic analysis in environmental epidemiology studies for potential application in chemical risk assessment. Environment International 164, pages 107278.
Crossref
Crossref
Ahto Salumets, Liina Tserel, Anna P. Rumm, Lehte Türk, Külli Kingo, Kai Saks, Astrid Oras, Raivo Uibo, Riin Tamm, Hedi Peterson, Kai Kisand & Pärt Peterson. (2022)
Epigenetic quantification of immunosenescent CD8
+
TEMRA cells in human blood
. Aging Cell 21:5.
Crossref
Crossref
Shakiba Eslamimehr, A Daniel Jones, Thilani M Anthony, S Hasan Arshad, John W Holloway, Susan Ewart, Rui Luo, Nandini Mukherjee, Parnian Kheirkhah Rahimabad, Su Chen & Wilfried Karmaus. (2022) Association of prenatal acetaminophen use and acetaminophen metabolites with DNA methylation of newborns: analysis of two consecutive generations of the Isle of Wight birth cohort. Environmental Epigenetics 8:1.
Crossref
Crossref
Aniruddha Rathod, Hongmei Zhang, Syed Hasan Arshad, Susan Ewart, Caroline L. Relton, Wilfried Karmaus & John W. Holloway. (2022) DNA Methylation and Asthma Acquisition during Adolescence and Post-Adolescence, an Epigenome-Wide Longitudinal Study. Journal of Personalized Medicine 12:2, pages 202.
Crossref
Crossref
Basharat Bhat & Gregory T. Jones. 2022. Chromatin. Chromatin
23
45
.
Yale Jiang, Erick Forno & Wei Chen. 2022. Epigenome-Wide Association Studies. Epigenome-Wide Association Studies
85
99
.
Rutu Rathod, Hongmei Zhang, Wilfried Karmaus, Susan Ewart, Latha Kadalayil, Caroline Relton, Susan Ring, S. Hasan Arshad & John W. Holloway. (2021) BMI trajectory in childhood is associated with asthma incidence at young adulthood mediated by DNA methylation. Allergy, Asthma & Clinical Immunology 17:1.
Crossref
Crossref
Nicholas D. Johnson, Xiumei Wu, Christopher D. Still, Xin Chu, Anthony T. Petrick, Glenn S. Gerhard, Karen N. Conneely & Johanna K. DiStefano. (2021) Differential DNA methylation and changing cell-type proportions as fibrotic stage progresses in NAFLD. Clinical Epigenetics 13:1.
Crossref
Crossref
Jiajing Wang, Hongmei Zhang, Faisal I. Rezwan, Caroline Relton, S. Hasan Arshad & John W. Holloway. (2021) Pre-adolescence DNA methylation is associated with BMI status change from pre- to post-adolescence. Clinical Epigenetics 13:1.
Crossref
Crossref
Dominique S. Michaud & Karl T. Kelsey. (2021) DNA Methylation in Peripheral Blood: Providing Novel Biomarkers of Exposure and Immunity to Examine Cancer Risk. Cancer Epidemiology, Biomarkers & Prevention 30:12, pages 2176-2178.
Crossref
Crossref
Austė Kanapeckaitė, Neringa Burokienė, Asta Mažeikienė, Graeme S. Cottrell & Darius Widera. (2021) Biophysics is reshaping our perception of the epigenome: from DNA-level to high-throughput studies. Biophysical Reports 1:2, pages 100028.
Crossref
Crossref
Rutu Rathod, Aniruddha Rathod, Parnian Kheirkhah Rahimabad, Jiasong Duan, Hongmei Zhang, S. Hasan Arshad & Wilfried Karmaus. (2021) Methylation of Host Genes Associated with Coronavirus Infection from Birth to 26 Years. Genes 12:8, pages 1198.
Crossref
Crossref
Line Hjort, Feride Rushiti, Shr-Jie Wang, Peter Fransquet, Sebahate P Krasniqi, Selvi I Çarkaxhiu, Dafina Arifaj, Vjosa Devaja Xhemaili, Mimoza Salihu, Nazmie A Leku & Joanne Ryan. (2021) Intergenerational effects of maternal post-traumatic stress disorder on offspring epigenetic patterns and cortisol levels. Epigenomics 13:12, pages 967-980.
Crossref
Crossref
Matthew A. Fischer & Thomas M. Vondriska. (2021) Clinical epigenomics for cardiovascular disease: Diagnostics and therapies. Journal of Molecular and Cellular Cardiology 154, pages 97-105.
Crossref
Crossref
Christiaan H. Vinkers, Elbert Geuze, Sanne J. H. van Rooij, Mitzy Kennis, Remmelt R. Schür, Danny M. Nispeling, Alicia K. Smith, Caroline M. Nievergelt, Monica Uddin, Bart P. F. Rutten, Eric Vermetten & Marco P. Boks. (2019) Successful treatment of post-traumatic stress disorder reverses DNA methylation marks. Molecular Psychiatry 26:4, pages 1264-1271.
Crossref
Crossref
Eilis Hannon, Emma L Dempster, Georgina Mansell, Joe Burrage, Nick Bass, Marc M Bohlken, Aiden Corvin, Charles J Curtis, David Dempster, Marta Di Forti, Timothy G Dinan, Gary Donohoe, Fiona Gaughran, Michael Gill, Amy Gillespie, Cerisse Gunasinghe, Hilleke E Hulshoff, Christina M Hultman, Viktoria Johansson, René S Kahn, Jaakko Kaprio, Gunter Kenis, Kaarina Kowalec, James MacCabe, Colm McDonald, Andrew McQuillin, Derek W Morris, Kieran C Murphy, Colette J Mustard, Igor Nenadic, Michael C O'Donovan, Diego Quattrone, Alexander L Richards, Bart PF Rutten, David St Clair, Sebastian Therman, Timothea Toulopoulou, Jim Van Os, John L Waddington, Patrick Sullivan, Evangelos Vassos, Gerome Breen, David Andrew Collier, Robin M Murray, Leonard S Schalkwyk & Jonathan Mill. (2021) DNA methylation meta-analysis reveals cellular alterations in psychosis and markers of treatment-resistant schizophrenia. eLife 10.
Crossref
Crossref
Hao Huang, Ding Zhang, Jinming Fu, Liyuan Zhao, Dapeng Li, Hongru Sun, Xinyan Liu, Jing Xu, Tian Tian, Lei Zhang, Ying Liu, Yuanyuan Zhang & Yashuang Zhao. (2021) Tsukushi is a novel prognostic biomarker and correlates with tumor-infiltrating B cells in non-small cell lung cancer. Aging 13:3, pages 4428-4451.
Crossref
Crossref
Rutu Patel, Farnaz Solatikia, Hongmei Zhang, Alemayehu Wolde, Latha Kadalayil, Wilfried Karmaus, Susan Ewart, Ryan Arathimos, Caroline Relton, Susan Ring, Alexander John Henderson, Syed Hasan Arshad & John W. Holloway. (2020) Sex‐specific associations of asthma acquisition with changes in DNA methylation during adolescence. Clinical & Experimental Allergy 51:2, pages 318-328.
Crossref
Crossref
Emilie M. Herzog, Alex J. Eggink, Sten P. Willemsen, Roderick C. Slieker, Janine F. Felix, Andrew P. Stubbs, Peter J. van der Spek, Joyce B. J. van Meurs, Bastiaan T. Heijmans & Régine P. M. Steegers-Theunissen. (2020) The tissue-specific aspect of genome-wide DNA methylation in newborn and placental tissues: implications for epigenetic epidemiologic studies. Journal of Developmental Origins of Health and Disease 12:1, pages 113-123.
Crossref
Crossref
Aniruddha Rathod, Rutu Rathod, Hongmei Zhang, Parnian Kheirkhah Rahimabad, Wilfried Karmaus & Hasan Arshad. (2021) Association of Asthma and Rhinitis with Epigenetics of Coronavirus Related Genes. Epigenetics Insights 14, pages 251686572110392.
Crossref
Crossref
Luhang Han, Akhilesh Kaushal, Hongmei Zhang, Latha Kadalayil, Jiasong Duan, John W. Holloway, Wilfried Karmaus, Pratik Banerjee, Shih-Fen Tsai, Hui-Ju Wen, Syed Hasan Arshad & Shu-Li Wang. (2021) DNA Methylation at Birth is Associated with Childhood Serum Immunoglobulin E Levels. Epigenetics Insights 14, pages 251686572110081.
Crossref
Crossref
Rosario Montirosso, Livio Provenzi & Eleonora Mascheroni. 2021. Developmental Human Behavioral Epigenetics. Developmental Human Behavioral Epigenetics
143
156
.
Parnian Kheirkhah Rahimabad, Thilani M. Anthony, A. Daniel Jones, Shakiba Eslamimehr, Nandini Mukherjee, Susan Ewart, John W. Holloway, Hasan Arshad, Sarah Commodore & Wilfried Karmaus. (2020) Nicotine and Its Downstream Metabolites in Maternal and Cord Sera: Biomarkers of Prenatal Smoking Exposure Associated with Offspring DNA Methylation. International Journal of Environmental Research and Public Health 17:24, pages 9552.
Crossref
Crossref
Jose Vladimir Sandoval-Sierra, Francisco I. Salgado García, Jeffrey H. Brooks, Karen J. Derefinko & Khyobeni Mozhui. (2020) Effect of short-term prescription opioids on DNA methylation of the OPRM1 promoter. Clinical Epigenetics 12:1.
Crossref
Crossref
Marco Schmidt, Tiago Maié, Edgar Dahl, Ivan G. Costa & Wolfgang Wagner. (2020) Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites. BMC Biology 18:1.
Crossref
Crossref
Yufei Lin, Henry R. Kranzler, Lindsay A. Farrer, Hongqin Xu, David C. Henderson & Huiping Zhang. (2020) An analysis of the effect of mu-opioid receptor gene (OPRM1) promoter region DNA methylation on the response of naltrexone treatment of alcohol dependence. The Pharmacogenomics Journal 20:5, pages 672-680.
Crossref
Crossref
Lisa M. McEwen, Kieran J. O’Donnell, Megan G. McGillRachel D. EdgarMeaghan J. Jones, Julia L. MacIsaacDavid Tse Shen LinKatia RamadoriAlexander MorinNicole GladishElika GargEva UnternaehrerIrina PokhvisnevaNeerja KarnaniMichelle Z. L. Kee, Torsten KlengelNancy E. Adler, Ronald G. BarrNicole LetourneauGerald F. GiesbrechtJames N. ReynoldsDarina CzamaraJeffrey M. ArmstrongMarilyn J. EssexCarolina de WeerthRoseriet BeijersMarieke S. TollenaarBekh BradleyTanja JovanovicKerry J. ResslerMeir SteinerSonja EntringerPathik D. WadhwaClaudia BussNicole R. Bush, Elisabeth B. Binder, W. Thomas BoyceMichael J. MeaneySteve Horvath & Michael S. Kobor. (2019) The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells. Proceedings of the National Academy of Sciences 117:38, pages 23329-23335.
Crossref
Crossref
Andrea Maugeri, Martina Barchitta, Roberta Magnano San Lio, Giuliana Favara, Maria Clara La Rosa, Claudia La Mastra, Guido Basile & Antonella Agodi. (2020) Adherence to the Mediterranean diet partially mediates socioeconomic differences in leukocyte LINE-1 methylation: evidence from a cross-sectional study in Italian women. Scientific Reports 10:1.
Crossref
Crossref
Sarah R. Moore & Michael S. Kobor. (2018) Variability in DNA methylation at the serotonin transporter gene promoter: epigenetic mechanism or cell-type artifact?. Molecular Psychiatry 25:9, pages 1906-1909.
Crossref
Crossref
Mingyang Song & Shelley S. Tworoger. (2020) Systemic Immune Response and Cancer Risk: Filling the Missing Piece of Immuno-Oncology. Cancer Research 80:9, pages 1801-1803.
Crossref
Crossref
Livio Provenzi, Maddalena Brambilla, Giunia Scotto di Minico, Rosario Montirosso & Renato Borgatti. (2019) Maternal caregiving and DNA methylation in human infants and children: Systematic review. Genes, Brain and Behavior 19:3.
Crossref
Crossref
Robin F. Chan, Gustavo Turecki, Andrey A. Shabalin, Jerry Guintivano, Min Zhao, Lin Y. Xie, Gerard van Grootheest, Zachary A. Kaminsky, Brian Dean, Brenda W.J.H. Penninx, Karolina A. Aberg & Edwin J.C.G. van den Oord. (2020) Cell Type–Specific Methylome-wide Association Studies Implicate Neurotrophin and Innate Immune Signaling in Major Depressive Disorder. Biological Psychiatry 87:5, pages 431-442.
Crossref
Crossref
Jacob K. Kresovich, Katie M. O’Brien, Zongli Xu, Clarice R. Weinberg, Dale P. Sandler & Jack A. Taylor. (2020) Prediagnostic Immune Cell Profiles and Breast Cancer. JAMA Network Open 3:1, pages e1919536.
Crossref
Crossref
Rahul Gondalia, Katelyn M. Holliday, Antoine Baldassari, Anne E. Justice, James D. Stewart, Duanping Liao, Jeff D. Yanosky, Stephanie M. Engel, Kristina M. Jordahl, Parveen Bhatti, Steve Horvath, Themistocles L. Assimes, James S. Pankow, Ellen W. Demerath, Weihua Guan, Myriam Fornage, Jan Bressler, Kari E. North, Karen N. Conneely, Yun Li, Lifang Hou, Andrea A. Baccarelli & Eric A. Whitsel. (2020) Leukocyte Traits and Exposure to Ambient Particulate Matter Air Pollution in the Women’s Health Initiative and Atherosclerosis Risk in Communities Study. Environmental Health Perspectives 128:1.
Crossref
Crossref
Kord M Kober, Man-Cheung Lee, Adam Olshen, Yvette P Conley, Marina Sirota, Michael Keiser, Marilyn J Hammer, Gary Abrams, Mark Schumacher, Jon D Levine & Christine Miaskowski. (2020) Differential methylation and expression of genes in the hypoxia-inducible factor 1 signaling pathway are associated with paclitaxel-induced peripheral neuropathy in breast cancer survivors and with preclinical models of chemotherapy-induced neuropathic pain. Molecular Pain 16, pages 174480692093650.
Crossref
Crossref
Todd M. Everson & Carmen J. Marsit. 2020. Environmental Epigenetics in Toxicology and Public Health. Environmental Epigenetics in Toxicology and Public Health
89
105
.
Miljana Tanić. 2020. Epigenetics Methods. Epigenetics Methods
591
613
.
Wenhui Li, Ziyi Chen, Aiping Wu, F. Xiao-Feng Qin & Lianjun Zhang. 2020. Epigenetics of the Immune System. Epigenetics of the Immune System
239
252
.
Alexia Cardona, Felix R. DayJohn R.B. PerryMarie Loh, Audrey Y. Chu, Benjamin LehneDirk S. PaulLuca A. Lotta, Isobel D. StewartNicola D. KerrisonRobert A. ScottKay-Tee Khaw, Nita G. Forouhi, Claudia LangenbergChunyu Liu, Michael M. Mendelson, Daniel Levy, Stephan BeckR. David Leslie, Josée Dupuis, James B. Meigs, Jaspal S. KoonerJussi Pihlajamäki, Allan Vaag, Alexander Perfilyev, Charlotte Ling, Marie-France Hivert, John C. Chambers, Nicholas J. WarehamKen K. Ong. (2019) Epigenome-Wide Association Study of Incident Type 2 Diabetes in a British Population: EPIC-Norfolk Study. Diabetes 68:12, pages 2315-2326.
Crossref
Crossref
Sumaiya A. Islam, Sarah J. Goodman, Julia L. MacIsaac, Jelena Obradović, Ronald G. Barr, W. Thomas Boyce & Michael S. Kobor. (2019) Integration of DNA methylation patterns and genetic variation in human pediatric tissues help inform EWAS design and interpretation. Epigenetics & Chromatin 12:1.
Crossref
Crossref
Rick J. Jansen, Lin Tong, Maria Argos, Farzana Jasmine, Muhammad Rakibuz-Zaman, Golam Sarwar, Md. Tariqul Islam, Hasan Shahriar, Tariqul Islam, Mahfuzar Rahman, Md. Yunus, Muhammad G. Kibriya, John A. Baron, Habibul Ahsan & Brandon L. Pierce. (2019) The effect of age on DNA methylation in whole blood among Bangladeshi men and women. BMC Genomics 20:1.
Crossref
Crossref
Georgina Mansell, Tyler J. Gorrie-Stone, Yanchun Bao, Meena Kumari, Leonard S. Schalkwyk, Jonathan Mill & Eilis Hannon. (2019) Guidance for DNA methylation studies: statistical insights from the Illumina EPIC array. BMC Genomics 20:1.
Crossref
Crossref
Xiaoyu Li, Roby Joehanes, Ina Hoeschele, Stephen S. Rich, Jerome I. Rotter, Daniel Levy, Yongmei Liu, Susan Redline & Tamar Sofer. (2019) Association between sleep disordered breathing and epigenetic age acceleration: Evidence from the Multi-Ethnic Study of Atherosclerosis. EBioMedicine 50, pages 387-394.
Crossref
Crossref
Martina Barchitta, Andrea Maugeri, Roberta Magnano San Lio, Giuliana Favara, Maria Clara La Rosa, Claudia La Mastra, Annalisa Quattrocchi & Antonella Agodi. (2019) Dietary Patterns are Associated with Leukocyte LINE-1 Methylation in Women: A Cross-Sectional Study in Southern Italy. Nutrients 11:8, pages 1843.
Crossref
Crossref
Aaron R. Jeffries, Reza Maroofian, Claire G. Salter, Barry A. Chioza, Harold E. Cross, Michael A. Patton, Emma Dempster, I. Karen Temple, Deborah J.G. Mackay, Faisal I. Rezwan, Lise Aksglaede, Diana Baralle, Tabib Dabir, Matthew F. Hunter, Arveen Kamath, Ajith Kumar, Ruth Newbury-Ecob, Angelo Selicorni, Amanda Springer, Lionel Van Maldergem, Vinod Varghese, Naomi Yachelevich, Katrina Tatton-Brown, Jonathan Mill, Andrew H. Crosby & Emma L. Baple. (2019) Growth disrupting mutations in epigenetic regulatory molecules are associated with abnormalities of epigenetic aging. Genome Research 29:7, pages 1057-1066.
Crossref
Crossref
Veruscka Leso, Ilaria Vetrani, Ilaria Della Volpe, Caterina Nocera & Ivo Iavicoli. (2019) Welding Fume Exposure and Epigenetic Alterations: A Systematic Review. International Journal of Environmental Research and Public Health 16:10, pages 1745.
Crossref
Crossref
Thomas W. McDade, Calen P. Ryan, Meaghan J. Jones, Morgan K. Hoke, Judith Borja, Gregory E. Miller, Christopher W. Kuzawa & Michael S. Kobor. (2019) Genome‐wide analysis of DNA methylation in relation to socioeconomic status during development and early adulthood. American Journal of Physical Anthropology 169:1, pages 3-11.
Crossref
Crossref
Yu Kong, Deepa Rastogi, Cathal Seoighe, John M. Greally & Masako Suzuki. (2019) Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data. PLOS ONE 14:4, pages e0215987.
Crossref
Crossref
Eilis Hannon, Diana Schendel, Christine Ladd-Acosta, Jakob Grove, Christine Søholm Hansen, David Michael Hougaard, Michaeline Bresnahan, Ole Mors, Mads Vilhelm Hollegaard, Marie Bækvad-Hansen, Mady Hornig, Preben Bo Mortensen, Anders D. Børglum, Thomas Werge, Marianne Giørtz Pedersen, Merete Nordentoft, Joseph D. Buxbaum, M. Daniele Fallin, Jonas Bybjerg-Grauholm, Abraham Reichenberg & Jonathan Mill. (2019) Variable DNA methylation in neonates mediates the association between prenatal smoking and birth weight. Philosophical Transactions of the Royal Society B: Biological Sciences 374:1770, pages 20180120.
Crossref
Crossref
Chetan Bakshi, Rajesh Vijayvergiya & Veena Dhawan. (2019) Aberrant DNA methylation of M1-macrophage genes in coronary artery disease. Scientific Reports 9:1.
Crossref
Crossref
Jennifer A. Sumner, Natalie L. Colich, Monica Uddin, Don Armstrong & Katie A. McLaughlin. (2019) Early Experiences of Threat, but Not Deprivation, Are Associated With Accelerated Biological Aging in Children and Adolescents. Biological Psychiatry 85:3, pages 268-278.
Crossref
Crossref
Rhian L. Clissold, Beth Ashfield, Joe Burrage, Eilis Hannon, Coralie Bingham, Jonathan Mill, Andrew Hattersley & Emma L. Dempster. (2018) Genome-wide methylomic analysis in individuals with HNF1B intragenic mutation and 17q12 microdeletion. Clinical Epigenetics 10:1.
Crossref
Crossref
Qianyun Deng, Wei Huang, Chunyan Peng, Jiajia Gao, Zuhua Li, Xueping Qiu, Na Yang, Bifeng Yuan & Fang Zheng. (2018) Genomic 5-mC contents in peripheral blood leukocytes were independent protective factors for coronary artery disease with a specific profile in different leukocyte subtypes. Clinical Epigenetics 10:1.
Crossref
Crossref
Eilis Hannon, Diana Schendel, Christine Ladd-Acosta, Jakob Grove, Christine Søholm Hansen, Shan V. Andrews, David Michael Hougaard, Michaeline Bresnahan, Ole Mors, Mads Vilhelm Hollegaard, Marie Bækvad-Hansen, Mady Hornig, Preben Bo Mortensen, Anders D. Børglum, Thomas Werge, Marianne Giørtz Pedersen, Merete Nordentoft, Joseph Buxbaum, M. Daniele Fallin, Jonas Bybjerg-Grauholm, Abraham Reichenberg & Jonathan Mill. (2018) Elevated polygenic burden for autism is associated with differential DNA methylation at birth. Genome Medicine 10:1.
Crossref
Crossref
Elior Rahmani, Regev Schweiger, Liat Shenhav, Theodora Wingert, Ira Hofer, Eilon Gabel, Eleazar Eskin & Eran Halperin. (2018) BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference. Genome Biology 19:1.
Crossref
Crossref
Torkjel Manning Sandanger, Therese Haugdahl Nøst, Florence Guida, Charlotta Rylander, Gianluca Campanella, David C. Muller, Jenny van Dongen, Dorret I. Boomsma, Mattias Johansson, Paolo Vineis, Roel Vermeulen, Eiliv Lund & Marc Chadeau-Hyam. (2018) DNA methylation and associated gene expression in blood prior to lung cancer diagnosis in the Norwegian Women and Cancer cohort. Scientific Reports 8:1.
Crossref
Crossref
Laurie Grieshober, Stefan Graw, Matt J. Barnett, Mark D. Thornquist, Gary E. Goodman, Chu Chen, Devin C. Koestler, Carmen J. Marsit & Jennifer A. Doherty. (2018) Methylation-derived Neutrophil-to-Lymphocyte Ratio and Lung Cancer Risk in Heavy Smokers. Cancer Prevention Research 11:11, pages 727-734.
Crossref
Crossref
Eilis Hannon, Tyler J. Gorrie-Stone, Melissa C. Smart, Joe Burrage, Amanda Hughes, Yanchun Bao, Meena Kumari, Leonard C. Schalkwyk & Jonathan Mill. (2018) Leveraging DNA-Methylation Quantitative-Trait Loci to Characterize the Relationship between Methylomic Variation, Gene Expression, and Complex Traits. The American Journal of Human Genetics 103:5, pages 654-665.
Crossref
Crossref
Martina Barchitta, Andrea Maugeri, Annalisa Quattrocchi, Germana Barone, Paolo Mazzoleni, Alfio Catalfo, Guido De Guidi, Maria Giovanna Iemmolo, Nunzio Crimi & Antonella Agodi. (2018) Mediterranean Diet and Particulate Matter Exposure Are Associated With LINE-1 Methylation: Results From a Cross-Sectional Study in Women. Frontiers in Genetics 9.
Crossref
Crossref
Line Hjort, David Martino, Louise Groth Grunnet, Haroon Naeem, Jovana Maksimovic, Anders Henrik Olsson, Cuilin Zhang, Charlotte Ling, Sjurdur Frodi Olsen, Richard Saffery & Allan Arthur Vaag. (2018) Gestational diabetes and maternal obesity are associated with epigenome-wide methylation changes in children. JCI Insight 3:17.
Crossref
Crossref
Chris P. Verschoor, Vikas Kohli & Cynthia Balion. (2017) A comprehensive assessment of immunophenotyping performed in cryopreserved peripheral whole blood. Cytometry Part B: Clinical Cytometry 94:5, pages 818-826.
Crossref
Crossref
Ankur Chakravarthy, Andrew Furness, Kroopa Joshi, Ehsan Ghorani, Kirsty Ford, Matthew J. Ward, Emma V. King, Matt Lechner, Teresa Marafioti, Sergio A. Quezada, Gareth J. Thomas, Andrew Feber & Tim R. Fenton. (2018) Pan-cancer deconvolution of tumour composition using DNA methylation. Nature Communications 9:1.
Crossref
Crossref
Eilis Hannon, Olivia Knox, Karen Sugden, Joe Burrage, Chloe C. Y. Wong, Daniel W. Belsky, David L. Corcoran, Louise Arseneault, Terrie E. Moffitt, Avshalom Caspi & Jonathan Mill. (2018) Characterizing genetic and environmental influences on variable DNA methylation using monozygotic and dizygotic twins. PLOS Genetics 14:8, pages e1007544.
Crossref
Crossref
Isabel Alvarado-Cruz, Jorge A. Alegría-Torres, Nereida Montes-Castro, Octavio Jiménez-Garza & Betzabet Quintanilla-Vega. (2018) Environmental Epigenetic Changes, as Risk Factors for the Development of Diseases in Children: A Systematic Review. Annals of Global Health 84:2, pages 212-224.
Crossref
Crossref
Amita Bansal & Rebecca A. Simmons. (2018) Epigenetics and developmental origins of diabetes: correlation or causation?. American Journal of Physiology-Endocrinology and Metabolism 315:1, pages E15-E28.
Crossref
Crossref
Mario Bauer. (2018) Cell-type-specific disturbance of DNA methylation pattern: a chance to get more benefit from and to minimize cohorts for epigenome-wide association studies. International Journal of Epidemiology 47:3, pages 917-927.
Crossref
Crossref
Chengxiang Qiu, Robert L. Hanson, Gudeta Fufaa, Sayuko Kobes, Caroline Gluck, Jing Huang, Yong Chen, Dominic Raj, Robert G. Nelson, William C. Knowler & Katalin Susztak. (2018) Cytosine methylation predicts renal function decline in American Indians. Kidney International 93:6, pages 1417-1431.
Crossref
Crossref
Karl T. Kelsey & John K. Wiencke. (2018) Immunomethylomics: A Novel Cancer Risk Prediction Tool. Annals of the American Thoracic Society 15:Supplement_2, pages S76-S80.
Crossref
Crossref
T. W. McDade, M. J. Jones, G. Miller, J. Borja, M. S. Kobor & C. W. Kuzawa. (2017) Birth weight and postnatal microbial exposures predict the distribution of peripheral blood leukocyte subsets in young adults in the Philippines. Journal of Developmental Origins of Health and Disease 9:2, pages 198-207.
Crossref
Crossref
Joana Frobel, Tanja Božić, Michael Lenz, Peter Uciechowski, Yang Han, Reinhild Herwartz, Klaus Strathmann, Susanne Isfort, Jens Panse, André Esser, Carina Birkhofer, Uwe Gerstenmaier, Thomas Kraus, Lothar Rink, Steffen Koschmieder & Wolfgang Wagner. (2018) Leukocyte Counts Based on DNA Methylation at Individual Cytosines. Clinical Chemistry 64:3, pages 566-575.
Crossref
Crossref
J. Denham. (2018) Exercise and epigenetic inheritance of disease risk. Acta Physiologica 222:1, pages e12881.
Crossref
Crossref
Karolina A. Aberg, Robin F. Chan, Linying Xie, Andrey A. Shabalin & Edwin J. C. G. van den Oord. 2018. DNA Methylation Protocols. DNA Methylation Protocols
171
189
.
John K. Wiencke, Devin C. Koestler, Lucas A. Salas, Joseph L. Wiemels, Ritu P. Roy, Helen M. Hansen, Terri Rice, Lucie S. McCoy, Paige M. Bracci, Annette M. Molinaro, Karl T. Kelsey, Margaret R. Wrensch & Brock C. Christensen. (2017) Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival. Clinical Epigenetics 9:1.
Crossref
Crossref
Lisa M. McEwen, Alexander M. Morin, Rachel D. Edgar, Julia L. MacIsaac, Meaghan J. Jones, William H. Dow, Luis Rosero-Bixby, Michael S. Kobor & David H. Rehkopf. (2017) Differential DNA methylation and lymphocyte proportions in a Costa Rican high longevity region. Epigenetics & Chromatin 10:1.
Crossref
Crossref
Elior Rahmani, Liat Shenhav, Regev Schweiger, Paul Yousefi, Karen Huen, Brenda Eskenazi, Celeste Eng, Scott Huntsman, Donglei Hu, Joshua Galanter, Sam S. Oh, Melanie Waldenberger, Konstantin Strauch, Harald Grallert, Thomas Meitinger, Christian Gieger, Nina Holland, Esteban G. Burchard, Noah Zaitlen & Eran Halperin. (2017) Genome-wide methylation data mirror ancestry information. Epigenetics & Chromatin 10:1.
Crossref
Crossref
Pavlo Lutsik, Martin Slawski, Gilles Gasparoni, Nikita Vedeneev, Matthias Hein & Jörn Walter. (2017) MeDeCom: discovery and quantification of latent components of heterogeneous methylomes. Genome Biology 18:1.
Crossref
Crossref
Andrew E. Teschendorff, Charles E. Breeze, Shijie C. Zheng & Stephan Beck. (2017) A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies. BMC Bioinformatics 18:1.
Crossref
Crossref
Jim Kaput, Giuditta Perozzi, Marijana Radonjic & Fabio Virgili. (2017) Propelling the paradigm shift from reductionism to systems nutrition. Genes & Nutrition 12:1.
Crossref
Crossref
Qihua Tan, Bastiaan T Heijmans, Jacob VB Hjelmborg, Mette Soerensen, Kaare Christensen & Lene Christiansen. (2017) Handling blood cell composition in epigenetic studies on ageing. International Journal of Epidemiology 46:5, pages 1717-1718.
Crossref
Crossref
Alexander J. Titus, Rachel M. Gallimore, Lucas A. Salas & Brock C. Christensen. (2017) Cell-type deconvolution from DNA methylation: a review of recent applications. Human Molecular Genetics 26:R2, pages R216-R224.
Crossref
Crossref
Emilie M. Herzog, Alex J. Eggink, Sten P. Willemsen, Roderick C. Slieker, Kim P.J. Wijnands, Janine F. Felix, Jun Chen, Andrew Stubbs, Peter J. van der Spek, Joyce B. van Meurs & Régine P.M. Steegers-Theunissen. (2017) Early- and late-onset preeclampsia and the tissue-specific epigenome of the placenta and newborn. Placenta 58, pages 122-132.
Crossref
Crossref
Shaun D. McCullough, Radhika Dhingra, Marie C. Fortin & David Diaz-Sanchez. (2017) Air pollution and the epigenome: A model relationship for the exploration of toxicoepigenetics. Current Opinion in Toxicology 6, pages 18-25.
Crossref
Crossref
Alexander J. Titus, Gregory P. Way, Kevin C. Johnson & Brock C. Christensen. (2017) Deconvolution of DNA methylation identifies differentially methylated gene regions on 1p36 across breast cancer subtypes. Scientific Reports 7:1.
Crossref
Crossref
Deanna C. Shade, Hea Jin Park, Dorothy B. Hausman, Natalie Hohos, Richard B. Meagher, Gail P. A. Kauwell, Varun Kilaru, Richard D. Lewis, Alicia K. Smith & Lynn B. Bailey. (2017) DNA Methylation Changes in Whole Blood and CD16+ Neutrophils in Response to Chronic Folic Acid Supplementation in Women of Childbearing Age. International Journal for Vitamin and Nutrition Research 87:5-6, pages 271-278.
Crossref
Crossref
Tanja Jovanovic, L. Alexander Vance, Dorthie Cross, Anna K. Knight, Varun Kilaru, Vasiliki Michopoulos, Torsten Klengel & Alicia K. Smith. (2017) Exposure to Violence Accelerates Epigenetic Aging in Children. Scientific Reports 7:1.
Crossref
Crossref
Thomas W. McDadeCalen RyanMeaghan J. Jones, Julia L. MacIsaacAlexander M. MorinJess M. Meyer, Judith B. BorjaGregory E. Miller, Michael S. KoborChristopher W. Kuzawa. (2017) Social and physical environments early in development predict DNA methylation of inflammatory genes in young adulthood. Proceedings of the National Academy of Sciences 114:29, pages 7611-7616.
Crossref
Crossref
Jana Jeschke, Martin Bizet, Christine Desmedt, Emilie Calonne, Sarah Dedeurwaerder, Soizic Garaud, Alexander Koch, Denis Larsimont, Roberto Salgado, Gert Van den Eynden, Karen Willard Gallo, Gianluca Bontempi, Matthieu Defrance, Christos Sotiriou & François Fuks. (2017) DNA methylation–based immune response signature improves patient diagnosis in multiple cancers. Journal of Clinical Investigation 127:8, pages 3090-3102.
Crossref
Crossref
Ronald L. Simons, Man-Kit Lei, Steven R.H. Beach, Ashley B. Barr, Carolyn E. Cutrona, Frederick X. Gibbons & Robert A. Philibert. (2017) An index of the ratio of inflammatory to antiviral cell types mediates the effects of social adversity and age on chronic illness. Social Science & Medicine 185, pages 158-165.
Crossref
Crossref
Lucia Aronica, A Joan Levine, Kevin Brennan, Jeffrey Mi, Christopher Gardner, Robert W Haile & Megan P Hitchins. (2017) A systematic review of studies of DNA methylation in the context of a weight loss intervention. Epigenomics 9:5, pages 769-787.
Crossref
Crossref
Huihui Ji, Yunliang Wang, Guili Liu, Lan Chang, Zhongming Chen, Dongsheng Zhou, Xuting Xu, Wei Cui, Qingxiao Hong, Liting Jiang, Jinfeng Li, Xiaohui Zhou, Ying Li, Zhiping Guo, Qin Zha, Yanfang Niu, Qiuyan Weng, Shiwei Duan & Qinwen Wang. (2017) Elevated OPRD1 promoter methylation in Alzheimer’s disease patients. PLOS ONE 12:3, pages e0172335.
Crossref
Crossref
Devin C. Koestler, Joseph Usset, Brock C. Christensen, Carmen J. Marsit, Margaret R. Karagas, Karl T. Kelsey & John K. Wiencke. (2017) DNA Methylation-Derived Neutrophil-to-Lymphocyte Ratio: An Epigenetic Tool to Explore Cancer Inflammation and Outcomes. Cancer Epidemiology, Biomarkers & Prevention 26:3, pages 328-338.
Crossref
Crossref
Elizabeth C. Nowak, J. Louise Lines, Frederick S. Varn, Jie Deng, Aurelien Sarde, Rodwell Mabaera, Anna Kuta, Isabelle Le Mercier, Chao Cheng & Randolph J. Noelle. (2017) Immunoregulatory functions of VISTA. Immunological Reviews 276:1, pages 66-79.
Crossref
Crossref
L. Yamada & S. Chong. (2016) Epigenetic studies in Developmental Origins of Health and Disease: pitfalls and key considerations for study design and interpretation. Journal of Developmental Origins of Health and Disease 8:1, pages 30-43.
Crossref
Crossref
Jonathan A Heiss, Lutz P Breitling, Benjamin Lehne, Jaspal S Kooner, John C Chambers & Hermann Brenner. (2017) Training a model for estimating leukocyte composition using whole-blood DNA methylation and cell counts as reference. Epigenomics 9:1, pages 13-20.
Crossref
Crossref
Laura Cantone, Simona Iodice, Letizia Tarantini, Benedetta Albetti, Ilaria Restelli, Luisella Vigna, Matteo Bonzini, Angela Cecilia Pesatori & Valentina Bollati. (2017) Particulate matter exposure is associated with inflammatory gene methylation in obese subjects. Environmental Research 152, pages 478-484.
Crossref
Crossref
Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin & Eran Halperin. 2017. Research in Computational Molecular Biology. Research in Computational Molecular Biology
207
223
.
Lisa M. McEwen, Sarah J. Goodman, Michael S. Kobor & Meaghan J. Jones. 2017. The Ageing Immune System and Health. The Ageing Immune System and Health
35
52
.
Masako Suzuki, Ryo Maekawa, Nicole E. Patterson, David M. Reynolds, Brent R. Calder, Sandra E. Reznik, Hye J. Heo, Francine Hughes Einstein & John M. Greally. (2016) Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus. Clinical Epigenetics 8:1.
Crossref
Crossref
Corey T. Watson, Panos Roussos, Paras Garg, Daniel J. Ho, Nidha Azam, Pavel L. Katsel, Vahram Haroutunian & Andrew J. Sharp. (2016) Genome-wide DNA methylation profiling in the superior temporal gyrus reveals epigenetic signatures associated with Alzheimer’s disease. Genome Medicine 8:1.
Crossref
Crossref
Eilis Hannon, Emma Dempster, Joana Viana, Joe Burrage, Adam R. Smith, Ruby Macdonald, David St Clair, Colette Mustard, Gerome Breen, Sebastian Therman, Jaakko Kaprio, Timothea Toulopoulou, Hilleke E. Hulshoff Pol, Marc M. Bohlken, Rene S. Kahn, Igor Nenadic, Christina M. Hultman, Robin M. Murray, David A. Collier, Nick Bass, Hugh Gurling, Andrew McQuillin, Leonard Schalkwyk & Jonathan Mill. (2016) An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation. Genome Biology 17:1.
Crossref
Crossref
Devin C. Koestler, Meaghan J. Jones, Joseph Usset, Brock C. Christensen, Rondi A. Butler, Michael S. Kobor, John K. Wiencke & Karl T. Kelsey. (2016) Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL). BMC Bioinformatics 17:1.
Crossref
Crossref
Elisa A. Esposito, Meaghan J. Jones, Jenalee R. Doom, Julia L MacIsaac, Megan R. Gunnar & Michael S. Kobor. (2016) Differential DNA methylation in peripheral blood mononuclear cells in adolescents exposed to significant early but not later childhood adversity. Development and Psychopathology 28:4pt2, pages 1385-1399.
Crossref
Crossref
Mathias Rask-Andersen, Nathalie Bringeland, Emil K Nilsson, Marcus Bandstein, Marcela Olaya Búcaro, Heike Vogel, Annette Schürmann, Pleunie S Hogenkamp, Christian Benedict & Helgi B Schiöth. (2016) Postprandial alterations in whole-blood DNA methylation are mediated by changes in white blood cell composition. The American Journal of Clinical Nutrition 104:2, pages 518-525.
Crossref
Crossref
Hubert Hackl, Pornpimol Charoentong, Francesca Finotello & Zlatko Trajanoski. (2016) Computational genomics tools for dissecting tumour–immune cell interactions. Nature Reviews Genetics 17:8, pages 441-458.
Crossref
Crossref
Elior Rahmani, Noah Zaitlen, Yael Baran, Celeste Eng, Donglei Hu, Joshua Galanter, Sam Oh, Esteban G Burchard, Eleazar Eskin, James Zou & Eran Halperin. (2016) Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies. Nature Methods 13:5, pages 443-445.
Crossref
Crossref
Symen Ligthart, Rebecca V. Steenaard, Marjolein J. Peters, Joyce B. J. van Meurs, Eric J. G. Sijbrands, André G. Uitterlinden, Marc J. Bonder, Albert Hofman, Oscar H. Franco & Abbas Dehghan. (2016) Tobacco smoking is associated with DNA methylation of diabetes susceptibility genes. Diabetologia 59:5, pages 998-1006.
Crossref
Crossref
Tali Mazor, Aleksandr Pankov, Jun S. Song & Joseph F. Costello. (2016) Intratumoral Heterogeneity of the Epigenome. Cancer Cell 29:4, pages 440-451.
Crossref
Crossref
Sabine A. S. Langie, Katarzyna Szarc vel Szic, Ken Declerck, Sophie Traen, Gudrun Koppen, Guy Van Camp, Greet Schoeters, Wim Vanden Berghe & Patrick De Boever. (2016) Whole-Genome Saliva and Blood DNA Methylation Profiling in Individuals with a Respiratory Allergy. PLOS ONE 11:3, pages e0151109.
Crossref
Crossref
Lindsay L. Waite, Benjamin Weaver, Kenneth Day, Xinrui Li, Kevin Roberts, Andrew W. Gibson, Jeffrey C. Edberg, Robert P. Kimberly, Devin M. Absher & Hemant K. Tiwari. (2016) Estimation of Cell-Type Composition Including T and B Cell Subtypes for Whole Blood Methylation Microarray Data. Frontiers in Genetics 7.
Crossref
Crossref
Nicole Wong Doo, Enes Makalic, JiHoon E Joo, Claire M Vajdic, Daniel F Schmidt, Ee Ming Wong, Chol-Hee Jung, Gianluca Severi, Daniel J Park, Jessica Chung, Laura Baglietto, Henry Miles Prince, John F Seymour, Constantine Tam, John L Hopper, Dallas R English, Roger L Milne, Simon J Harrison, Melissa C Southey & Graham G Giles. (2016) Global measures of peripheral blood-derived DNA methylation as a risk factor in the development of mature B-cell neoplasms. Epigenomics 8:1, pages 55-66.
Crossref
Crossref
Erica L. Smearman, Lynn M. Almli, Karen N. Conneely, Gene H. Brody, Jessica M. Sales, Bekh Bradley, Kerry J. Ressler & Alicia K. Smith. (2016) Oxytocin Receptor Genetic and Epigenetic Variations: Association With Child Abuse and Adult Psychiatric Symptoms. Child Development 87:1, pages 122-134.
Crossref
Crossref
Ines Florath, Katja Butterbach, Jonathan Heiss, Melanie Bewerunge-Hudler, Yan Zhang, Ben Schöttker & Hermann Brenner. (2015) Type 2 diabetes and leucocyte DNA methylation: an epigenome-wide association study in over 1,500 older adults. Diabetologia 59:1, pages 130-138.
Crossref
Crossref
Mary Beth Terry, Jasmine A. McDonald, Hui Chen Wu, Sybil Eng & Regina M. Santella. 2016. Novel Biomarkers in the Continuum of Breast Cancer. Novel Biomarkers in the Continuum of Breast Cancer
33
68
.
Aliza P. Wingo, Lynn M. Almli, Jennifer S. Stevens, Torsten Klengel, Monica Uddin, Yujing Li, Angela C. Bustamante, Adriana Lori, Nastassja Koen, Dan J. Stein, Alicia K. Smith, Allison E. Aiello, Karestan C. Koenen, Derek E. Wildman, Sandro Galea, Bekh Bradley, Elisabeth B. Binder, Peng Jin, Greg Gibson & Kerry J. Ressler. (2015) DICER1 and microRNA regulation in post-traumatic stress disorder with comorbid depression. Nature Communications 6:1.
Crossref
Crossref
Dieuwertje E. G. Kok, Rosalie A. M. Dhonukshe-Rutten, Carolien Lute, Sandra G. Heil, André G. Uitterlinden, Nathalie van der Velde, Joyce B. J. van Meurs, Natasja M. van Schoor, Guido J. E. J. Hooiveld, Lisette C. P. G. M. de Groot, Ellen Kampman & Wilma T. Steegenga. (2015) The effects of long-term daily folic acid and vitamin B12 supplementation on genome-wide DNA methylation in elderly subjects. Clinical Epigenetics 7:1.
Crossref
Crossref
Mario Bauer, Gunter Linsel, Beate Fink, Kirsten Offenberg, Anne Maria Hahn, Ulrich Sack, Heike Knaack, Markus Eszlinger & Gunda Herberth. (2015) A varying T cell subtype explains apparent tobacco smoking induced single CpG hypomethylation in whole blood. Clinical Epigenetics 7:1.
Crossref
Crossref
Rebecca V Steenaard, Symen Ligthart, Lisette Stolk, Marjolein J Peters, Joyce B van Meurs, Andre G Uitterlinden, Albert Hofman, Oscar H Franco & Abbas Dehghan. (2015) Tobacco smoking is associated with methylation of genes related to coronary artery disease. Clinical Epigenetics 7:1.
Crossref
Crossref
Miina Ollikainen, Khadeeja Ismail, Kristina Gervin, Anjuska Kyllönen, Antti Hakkarainen, Jesper Lundbom, Elina A Järvinen, Jennifer R Harris, Nina Lundbom, Aila Rissanen, Robert Lyle, Kirsi H Pietiläinen & Jaakko Kaprio. (2015) Genome-wide blood DNA methylation alterations at regulatory elements and heterochromatic regions in monozygotic twins discordant for obesity and liver fat. Clinical Epigenetics 7:1.
Crossref
Crossref
Todd M. Everson, Genevieve Lyons, Hongmei Zhang, Nelís Soto-Ramírez, Gabrielle A. Lockett, Veeresh K. Patil, Simon K. Merid, Cilla Sӧderhӓll, Erik Melén, John W. Holloway, S. Hasan Arshad & Wilfried Karmaus. (2015) DNA methylation loci associated with atopy and high serum IgE: a genome-wide application of recursive Random Forest feature selection. Genome Medicine 7:1.
Crossref
Crossref
Pau Farré, Meaghan J Jones, Michael J Meaney, Eldon Emberly, Gustavo Turecki & Michael S Kobor. (2015) Concordant and discordant DNA methylation signatures of aging in human blood and brain. Epigenetics & Chromatin 8:1.
Crossref
Crossref
Stephanie C. Hicks & Rafael A. Irizarry. (2015) quantro: a data-driven approach to guide the choice of an appropriate normalization method. Genome Biology 16:1.
Crossref
Crossref
Netha Ulahannan & John M Greally. (2015) Genome-wide assays that identify and quantify modified cytosines in human disease studies. Epigenetics & Chromatin 8:1.
Crossref
Crossref
Dominique S. Michaud, E. Andres Houseman, Carmen J. Marsit, Heather H. Nelson, John K. Wiencke & Karl T. Kelsey. (2015) Understanding the Role of the Immune System in the Development of Cancer: New Opportunities for Population-Based Research. Cancer Epidemiology, Biomarkers & Prevention 24:12, pages 1811-1819.
Crossref
Crossref
Vania Januar, Gernot Desoye, Boris Novakovic, Silvija Cvitic & Richard Saffery. (2015) Epigenetic regulation of human placental function and pregnancy outcome: considerations for causal inference. American Journal of Obstetrics and Gynecology 213:4, pages S182-S196.
Crossref
Crossref
Matthew Suderman, Jane J Pappas, Nada Borghol, Jessica L Buxton, Wendy L McArdle, Susan M Ring, Clyde Hertzman, Chris Power, Moshe Szyf & Marcus Pembrey. (2015) Lymphoblastoid cell lines reveal associations of adult DNA methylation with childhood and current adversity that are distinct from whole blood associations. International Journal of Epidemiology 44:4, pages 1331-1340.
Crossref
Crossref
Kathleen Conway, Sharon N. Edmiston, Chiu-Kit Tse, Christopher Bryant, Pei Fen Kuan, Brionna Y. Hair, Eloise A. Parrish, Ryan May & Theresa Swift-Scanlan. (2015) Racial Variation in Breast Tumor Promoter Methylation in the Carolina Breast Cancer Study. Cancer Epidemiology, Biomarkers & Prevention 24:6, pages 921-930.
Crossref
Crossref
Isabel Beerman & Derrick J. Rossi. (2015) Epigenetic Control of Stem Cell Potential during Homeostasis, Aging, and Disease. Cell Stem Cell 16:6, pages 613-625.
Crossref
Crossref
Christine Ladd-Acosta. (2015) Epigenetic Signatures as Biomarkers of Exposure. Current Environmental Health Reports 2:2, pages 117-125.
Crossref
Crossref
E. Andres Houseman, Stephanie Kim, Karl T. Kelsey & John K. Wiencke. (2015) DNA Methylation in Whole Blood: Uses and Challenges. Current Environmental Health Reports 2:2, pages 145-154.
Crossref
Crossref
Jana Jeschke, Evelyne Collignon & François Fuks. (2014)
DNA
methylome profiling beyond promoters – taking an epigenetic snapshot of the breast tumor microenvironment
. The FEBS Journal 282:9, pages 1801-1814.
Crossref
Crossref
Na Cai, Simon Chang, Yihan Li, Qibin Li, Jingchu Hu, Jieqin Liang, Li Song, Warren Kretzschmar, Xiangchao Gan, Jerome Nicod, Margarita Rivera, Hong Deng, Bo Du, Keqing Li, Wenhu Sang, Jingfang Gao, Shugui Gao, Baowei Ha, Hung-Yao Ho, Chunmei Hu, Jian Hu, Zhenfei Hu, Guoping Huang, Guoqing Jiang, Tao Jiang, Wei Jin, Gongying Li, Kan Li, Yi Li, Yingrui Li, Youhui Li, Yu-Ting Lin, Lanfen Liu, Tiebang Liu, Ying Liu, Yuan Liu, Yao Lu, Luxian Lv, Huaqing Meng, Puyi Qian, Hong Sang, Jianhua Shen, Jianguo Shi, Jing Sun, Ming Tao, Gang Wang, Guangbiao Wang, Jian Wang, Linmao Wang, Xueyi Wang, Xumei Wang, Huanming Yang, Lijun Yang, Ye Yin, Jinbei Zhang, Kerang Zhang, Ning Sun, Wei Zhang, Xiuqing Zhang, Zhen Zhang, Hui Zhong, Gerome Breen, Jun Wang, Jonathan Marchini, Yiping Chen, Qi Xu, Xun Xu, Richard Mott, Guo-Jen Huang, Kenneth Kendler & Jonathan Flint. (2015) Molecular Signatures of Major Depression. Current Biology 25:9, pages 1146-1156.
Crossref
Crossref
Khyobeni Mozhui, Alicia K. Smith & Frances A. Tylavsky. (2015) Ancestry Dependent DNA Methylation and Influence of Maternal Nutrition. PLOS ONE 10:3, pages e0118466.
Crossref
Crossref
Yurii B. Shvetsov, Min-Ae Song, Qiuyin Cai, Maarit Tiirikainen, Yong-Bing Xiang, Xiao-Ou Shu & Herbert Yu. (2015) Intraindividual Variation and Short-term Temporal Trend in DNA Methylation of Human Blood. Cancer Epidemiology, Biomarkers & Prevention 24:3, pages 490-497.
Crossref
Crossref
Ares Roca??n-Arj?Jessica Dennis, Pierre Suchon, Dylan A?ssi, Vinh Truong, David-Alexandre Tr?gou?t, France Gagnon & Pierre-Emmanuel Morange. (2015) Thrombin Generation Potential and Whole-Blood DNA methylation. Thrombosis Research 135:3, pages 561-564.
Crossref
Crossref
Maria Argos, Lin Chen, Farzana Jasmine, Lin Tong, Brandon L. Pierce, Shantanu Roy, Rachelle Paul-Brutus, Mary V. Gamble, Kristin N. Harper, Faruque Parvez, Mahfuzar Rahman, Muhammad Rakibuz-Zaman, Vesna Slavkovich, John A. Baron, Joseph H. Graziano, Muhammad G. Kibriya & Habibul Ahsan. (2015) Gene-Specific Differential DNA Methylation and Chronic Arsenic Exposure in an Epigenome-Wide Association Study of Adults in Bangladesh. Environmental Health Perspectives 123:1, pages 64-71.
Crossref
Crossref
S J van Dijk, P L Molloy, H Varinli, J L Morrison, B S Muhlhausler, M Buckley, S J Clark, I C McMillen, M Noakes, K Samaras & R L Tellam. (2014) Epigenetics and human obesity. International Journal of Obesity 39:1, pages 85-97.
Crossref
Crossref
Ivana V. Yang & David A. Schwartz. (2015) Epigenetics of idiopathic pulmonary fibrosis. Translational Research 165:1, pages 48-60.
Crossref
Crossref
E. Andrés Houseman. 2015. Computational and Statistical Epigenomics. Computational and Statistical Epigenomics
35
50
.
James M. Flanagan. 2015. Cancer Epigenetics. Cancer Epigenetics
51
63
.
Meaghan J. Jones, Sumaiya A. Islam, Rachel D. Edgar & Michael S. Kobor. 2017. Population Epigenetics. Population Epigenetics
99
106
.
Alicia K. Smith, Varun Kilaru, Torsten Klengel, Kristina B. Mercer, Bekh Bradley, Karen N. Conneely, Kerry J. Ressler & Elisabeth B. Binder. (2015) DNA extracted from saliva for methylation studies of psychiatric traits: Evidence tissue specificity and relatedness to brain. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 168:1, pages 36-44.
Crossref
Crossref
Devin C Koestler, Prabhakar Chalise, Mine S Cicek, Julie M Cunningham, Sebastian Armasu, Melissa C Larson, Jeremy Chien, Matthew Block, Kimberly R Kalli, Thomas A Sellers, Brooke L Fridley & Ellen L Goode. (2014) Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer. BMC Medical Genomics 7:1.
Crossref
Crossref
Xinhui Wang, Peter W Laird, Toshinori Hinoue, Susan Groshen & Kimberly D Siegmund. (2014) Non-specific filtering of beta-distributed data. BMC Bioinformatics 15:1.
Crossref
Crossref
N. Ari Wijetunga, Fabien Delahaye, Yong M. Zhao, Aaron Golden, Jessica C. Mar, Francine H. Einstein & John M. Greally. (2014) The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences. Nature Communications 5:1.
Crossref
Crossref
Dylan Aïssi, Jessica Dennis, Martin Ladouceur, Vinh Truong, Nora Zwingerman, Ares Rocanin-Arjo, Marine Germain, Tara A. Paton, Pierre-Emmanuel Morange, France Gagnon & David-Alexandre Trégouët. (2014) Genome-Wide Investigation of DNA Methylation Marks Associated with FV Leiden Mutation. PLoS ONE 9:9, pages e108087.
Crossref
Crossref
L. Liang & W. O. C. Cookson. (2014) Grasping nettles: cellular heterogeneity and other confounders in epigenome-wide association studies. Human Molecular Genetics 23:R1, pages R83-R88.
Crossref
Crossref
Leonie Roos, Timothy D Spector & Christopher G Bell. (2014) Using epigenomic studies in monozygotic twins to improve our understanding of cancer. Epigenomics 6:3, pages 299-309.
Crossref
Crossref
Angela C. Bustamante & Monica Uddin. (2014) Epidemiology, Epigenetics, and Psychopathology. Medical Epigenetics 2:1, pages 60-70.
Crossref
Crossref
Eugene Andres Houseman, John Molitor & Carmen J. Marsit. (2014) Reference-free cell mixture adjustments in analysis of DNA methylation data. Bioinformatics 30:10, pages 1431-1439.
Crossref
Crossref
Karen Huen, Paul Yousefi, Asa Bradman, Liying Yan, Kim G. Harley, Katherine Kogut, Brenda Eskenazi & Nina Holland. (2013) Effects of age, sex, and persistent organic pollutants on DNA methylation in children. Environmental and Molecular Mutagenesis 55:3, pages 209-222.
Crossref
Crossref
Yun Li, Jason A. Chen, Renee L. Sears, Fuying Gao, Eric D. Klein, Anna Karydas, Michael D. Geschwind, Howard J. Rosen, Adam L. Boxer, Weilong Guo, Matteo Pellegrini, Steve Horvath, Bruce L. Miller, Daniel H. Geschwind & Giovanni Coppola. (2014) An Epigenetic Signature in Peripheral Blood Associated with the Haplotype on 17q21.31, a Risk Factor for Neurodegenerative Tauopathy. PLoS Genetics 10:3, pages e1004211.
Crossref
Crossref
James Zou, Christoph Lippert, David Heckerman, Martin Aryee & Jennifer Listgarten. (2014) Epigenome-wide association studies without the need for cell-type composition. Nature Methods 11:3, pages 309-311.
Crossref
Crossref
William P Accomando, John K Wiencke, E Houseman, Heather H Nelson & Karl T Kelsey. (2014) Quantitative reconstruction of leukocyte subsets using DNA methylation. Genome Biology 15:3, pages R50.
Crossref
Crossref
Monica Uddin, Angela Bustamante & Satoshi Toyokawa. 2014. Epigenetics in Psychiatry. Epigenetics in Psychiatry
101
127
.
Abdou Rachid Thiam, Robert V. Farese Jr & Tobias C. Walther. (2013) The biophysics and cell biology of lipid droplets. Nature Reviews Molecular Cell Biology 14:12, pages 775-786.
Crossref
Crossref
Paul Cordero, Javier Campion, Fermin I. Milagro & J. Alfredo Martinez. (2013) Transcriptomic and epigenetic changes in early liver steatosis associated to obesity: Effect of dietary methyl donor supplementation. Molecular Genetics and Metabolism 110:3, pages 388-395.
Crossref
Crossref
C S Wilhelm-Benartzi, D C Koestler, M R Karagas, J M Flanagan, B C Christensen, K T Kelsey, C J Marsit, E A Houseman & R Brown. (2013) Review of processing and analysis methods for DNA methylation array data. British Journal of Cancer 109:6, pages 1394-1402.
Crossref
Crossref
Devin C. Koestler, Michele Avissar-Whiting, E. Andres Houseman, Margaret R. Karagas & Carmen J. Marsit. (2013)
Differential DNA Methylation in Umbilical Cord Blood of Infants Exposed to Low Levels of Arsenic
in Utero
. Environmental Health Perspectives 121:8, pages 971-977.
Crossref
Crossref
Mark N Cruickshank, Alicia Oshlack, Christiane Theda, Peter G Davis, David Martino, Penelope Sheehan, Yun Dai, Richard Saffery, Lex W Doyle & Jeffrey M Craig. (2013) Analysis of epigenetic changes in survivors of preterm birth reveals the effect of gestational age and evidence for a long term legacy. Genome Medicine 5:10, pages 96.
Crossref
Crossref