Citations (79)
Keep up to date with the latest research on this topic with citation updates for this article.
Read on this site (5)
Diego Rivera Gelsinger, Rahul Reddy, Kathleen Whittington, Sara Debic & Jocelyne DiRuggiero. (2021) Post-transcriptional regulation of redox homeostasis by the small RNA SHOxi in haloarchaea. RNA Biology 18:11, pages 1867-1881.
Read now
Read now
Felipe Ten-Caten, Ricardo Z. N. Vêncio, Alan Péricles R. Lorenzetti, Livia Soares Zaramela, Ana Carolina Santana & Tie Koide. (2018) Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea. RNA Biology 15:8, pages 1119-1132.
Read now
Read now
Daniela Prasse, Konrad U. Förstner, Dominik Jäger, Rolf Backofen & Ruth A. Schmitz. (2017) sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1. RNA Biology 14:11, pages 1544-1558.
Read now
Read now
Alexey Nikulin, Alisa Mikhailina, Natalia Lekontseva, Vitalii Balobanov, Ekaterina Nikonova & Svetlana Tishchenko. (2017) Characterization of RNA-binding properties of the archaeal Hfq-like protein from Methanococcus jannaschii. Journal of Biomolecular Structure and Dynamics 35:8, pages 1615-1628.
Read now
Read now
Emiko Noro, Masaru Mori, Gakuto Makino, Yuki Takai, Sumiko Ohnuma, Asako Sato, Masaru Tomita, Kenji Nakahigashi & Akio Kanai. (2017) Systematic characterization of artificial small RNA-mediated inhibition of Escherichia coli growth. RNA Biology 14:2, pages 206-218.
Read now
Read now
Articles from other publishers (74)
Juan Du, Tianyi Huang, Zhen Zheng, Shuai Fang, Hongxia Deng & Kaitai Liu. (2023) Biological function and clinical application prospect of tsRNAs in digestive system biology and pathology. Cell Communication and Signaling 21:1.
Crossref
Crossref
Felix Grünberger, Georg Schmid, Zubeir El Ahmad, Martin Fenk, Katharina Vogl, Robert Reichelt, Winfried Hausner, Henning Urlaub, Christof Lenz & Dina Grohmann. (2023) Uncovering the temporal dynamics and regulatory networks of thermal stress response in a hyperthermophile using transcriptomics and proteomics. mBio.
Crossref
Crossref
Ulrike Kusebauch, Alan P. R. Lorenzetti, David S. Campbell, Min Pan, David Shteynberg, Charu Kapil, Mukul K. Midha, Adrián López García de Lomana, Nitin S. Baliga & Robert L. Moritz. (2023) A comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS. Scientific Data 10:1.
Crossref
Crossref
Qunli Xiong & Yaguang Zhang. (2023) Small RNA modifications: regulatory molecules and potential applications. Journal of Hematology & Oncology 16:1.
Crossref
Crossref
Raymond Fan & Andreas Hilfinger. (2023) The effect of microRNA on protein variability and gene expression fidelity. Biophysical Journal 122:5, pages 905-923.
Crossref
Crossref
Xinq Yuan Tan, Marimuthu Citartan, Suresh Venkata Chinni, Siti Aminah Ahmed & Thean-Hock Tang. (2022) Biocomputational Identification of sRNAs in Leptospira interrogans Serovar Lai. Indian Journal of Microbiology 63:1, pages 33-41.
Crossref
Crossref
Kanakachari Mogilicherla & Amit Roy. (2023) Epigenetic regulations as drivers of insecticide resistance and resilience to climate change in arthropod pests. Frontiers in Genetics 13.
Crossref
Crossref
Thirupathi Kasthuri, Singh Dikshant, Singhal Hardik, Muruganandam Nandhakumar, Sivaraj Barath & Shunmugiah Karutha Pandian. 2023. Understanding Microbial Biofilms. Understanding Microbial Biofilms
373
394
.
Katarína Grešová, Panagiotis Alexiou & Ilektra-Chara Giassa. (2022) Small RNA Targets: Advances in Prediction Tools and High-Throughput Profiling. Biology 11:12, pages 1798.
Crossref
Crossref
Qunli Xiong, Yaguang Zhang, Junjun Li & Qing Zhu. (2022) Small Non-Coding RNAs in Human Cancer. Genes 13:11, pages 2072.
Crossref
Crossref
Manisha Deogharia & Priyatansh Gurha. (2021)
The “guiding” principles of noncoding
RNA
function
. WIREs RNA 13:4.
Crossref
Crossref
Weixi Wang, Lin Zhu, Huiting Li, Weiying Ren, Ran Zhuo, Chenchen Feng, Yuting He, Yu Hu & Cong Ye. (2022) Alveolar macrophage-derived exosomal tRF-22-8BWS7K092 activates Hippo signaling pathway to induce ferroptosis in acute lung injury. International Immunopharmacology 107, pages 108690.
Crossref
Crossref
Briana Wilson & Anindya Dutta. (2022) Function and Therapeutic Implications of tRNA Derived Small RNAs. Frontiers in Molecular Biosciences 9.
Crossref
Crossref
Junchao Shi, Tong Zhou & Qi Chen. (2022) Exploring the expanding universe of small RNAs. Nature Cell Biology 24:4, pages 415-423.
Crossref
Crossref
Kai-Yue Cao, Tong-Meng Yan, Ji-Zhou Zhang, Ting-Fung Chan, Jie Li, Chong Li, Elaine Lai-Han Leung, Jin Gao, Bao-Xian Zhang & Zhi-Hong Jiang. (2022) A tRNA-derived fragment from Chinese yew suppresses ovarian cancer growth via targeting TRPA1. Molecular Therapy - Nucleic Acids 27, pages 718-732.
Crossref
Crossref
Ignacio Vasquez, Ahmed Hossain, Hajarooba Gnanagobal, Katherinne Valderrama, Briony Campbell, Michael Ness, Steve J. Charette, Anthony K. Gamperl, Rocco Cipriano, Cristopher Segovia & Javier Santander. (2022) Comparative Genomics of Typical and Atypical Aeromonas salmonicida Complete Genomes Revealed New Insights into Pathogenesis Evolution. Microorganisms 10:1, pages 189.
Crossref
Crossref
Diego Guerra-Almeida, Diogo Antonio Tschoeke & Rodrigo Nunes-da-Fonseca. (2021) Understanding small ORF diversity through a comprehensive transcription feature classification. DNA Research 28:5.
Crossref
Crossref
Jian Wang, Pei-kang Dong, Xiu-feng Xu, Tao Huang, Shuai Mao, Qing-guo Wang, Jie Hao, Xiao-hong Liu, Xiao-dong Sun, Kai Kang, Quan Zhang, Jing-tian Li & Tao Wang. (2021) Identification of tRNA-derived Fragments and Their Potential Roles in Atherosclerosis. Current Medical Science 41:4, pages 712-721.
Crossref
Crossref
Luis Martinez-Liu, Rafael Hernandez-Guerrero, Nancy Rivera-Gomez, Mario Alberto Martinez-Nuñez, Pedro Escobar-Turriza, Eveline Peeters & Ernesto Perez-Rueda. (2021) Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms. PLOS ONE 16:7, pages e0254025.
Crossref
Crossref
Friedhelm Pfeiffer & Mike Dyall-Smith. (2021) Open Issues for Protein Function Assignment in Haloferax volcanii and Other Halophilic Archaea. Genes 12:7, pages 963.
Crossref
Crossref
Albert Weixlbaumer, Felix Grünberger, Finn Werner & Dina Grohmann. (2021) Coupling of Transcription and Translation in Archaea: Cues From the Bacterial World. Frontiers in Microbiology 12.
Crossref
Crossref
Sandra Pastor-Soler, Mónica Camacho, Vanesa Bautista, María-José Bonete & Julia Esclapez. (2021) Towards the Elucidation of Assimilative nasABC Operon Transcriptional Regulation in Haloferax mediterranei. Genes 12:5, pages 619.
Crossref
Crossref
Dulce Santos, Simon Remans, Stijn Van den Brande & Jozef Vanden Broeck. (2021) RNAs on the Go: Extracellular Transfer in Insects with Promising Prospects for Pest Management. Plants 10:3, pages 484.
Crossref
Crossref
Yiran Zhou, Haoran Peng, Qinghua Cui & Yuan Zhou. (2021) tRFTar: Prediction of tRF-target gene interactions via systemic re-analysis of Argonaute CLIP-seq datasets. Methods 187, pages 57-67.
Crossref
Crossref
David M. Bianchi, Troy A. Brier, Anustup Poddar, Muhammad S. Azam, Carin K. Vanderpool, Taekjip Ha & Zaida Luthey-Schulten. (2020) Stochastic Analysis Demonstrates the Dual Role of Hfq in Chaperoning E. coli Sugar Shock Response. Frontiers in Molecular Biosciences 7.
Crossref
Crossref
Ping He, Xiaodan Cai, Kangming Chen & Xuelin Fu. (2020) Identification of small RNAs involved in nitrogen fixation in Anabaena sp. PCC 7120 based on RNA-seq under steady state conditions. Annals of Microbiology 70:1.
Crossref
Crossref
Anna Wawrzyńska & Agnieszka Sirko. (2020) Proteasomal Degradation of Proteins Is Important for the Proper Transcriptional Response to Sulfur Deficiency Conditions in Plants. Plant and Cell Physiology 61:9, pages 1548-1564.
Crossref
Crossref
William Bart Bryant, Savanna Ray & Mary Katherine Mills. (2020) Global Analysis of Small Non-Coding RNA Populations across Tissues in the Malaria Vector, Anopheles gambiae. Insects 11:7, pages 406.
Crossref
Crossref
Gloria Payá, Vanesa Bautista, Mónica Camacho, María-José Bonete & Julia Esclapez. (2020) New proposal of nitrogen metabolism regulation by small RNAs in the extreme halophilic archaeon Haloferax mediterranei. Molecular Genetics and Genomics 295:3, pages 775-785.
Crossref
Crossref
Licong Shen, Xiaxia Hong, Wenjun Zhou & Yi Zhang. (2020) Expression profiles of tRNA-derived fragments and their potential roles in ovarian endometriosis. Epigenomics 12:3, pages 183-197.
Crossref
Crossref
Margaret W. Thairu & Allison K. Hansen. (2019)
Changes in Aphid Host Plant Diet Influence the Small-RNA Expression Profiles of Its Obligate Nutritional Symbiont,
Buchnera
. mBio 10:6.
Crossref
Crossref
Zhensheng Wang, Chunyan Wei, Xiao Hao, Weiwei Deng, Lianhui Zhang, Zenglei Wang & Heng Wang. (2019) Genome-wide identification and characterization of transfer RNA-derived small RNAs in Plasmodium falciparum. Parasites & Vectors 12:1.
Crossref
Crossref
Micaela Giani, Inés Garbayo, Carlos Vílchez & Rosa María Martínez-Espinosa. (2019) Haloarchaeal Carotenoids: Healthy Novel Compounds from Extreme Environments. Marine Drugs 17:9, pages 524.
Crossref
Crossref
Haliru Musa, Farizul Hafiz Kasim, Ahmad Anas Nagoor Gunny, Subash C.B. Gopinath, Suresh V. Chinni & Mohd. Azmier Ahmad. (2019) Whole genome sequence of moderate halophilic marine bacterium Marinobacter litoralis SW-45: Abundance of non-coding RNAs. International Journal of Biological Macromolecules 133, pages 1288-1298.
Crossref
Crossref
Jana Kliemt, Katharina Jaschinski & Jörg Soppa. (2019) A Haloarchaeal Small Regulatory RNA (sRNA) Is Essential for Rapid Adaptation to Phosphate Starvation Conditions. Frontiers in Microbiology 10.
Crossref
Crossref
Sebastian Laass, Vivian A. Monzon, Jana Kliemt, Matthias Hammelmann, Friedhelm Pfeiffer, Konrad U. Förstner & Jörg Soppa. (2019) Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq. PLOS ONE 14:4, pages e0215986.
Crossref
Crossref
João Paulo Pereira de Almeida, Ricardo Z. N. Vêncio, Alan P. R. Lorenzetti, Felipe ten- Caten, José Vicente Gomes-Filho & Tie Koide. (2019) The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1. Genes 10:4, pages 280.
Crossref
Crossref
Robert Root-Bernstein & Meredith Root-Bernstein. (2019) The Ribosome as a Missing Link in Prebiotic Evolution III: Over-Representation of tRNA- and rRNA-Like Sequences and Plieofunctionality of Ribosome-Related Molecules Argues for the Evolution of Primitive Genomes from Ribosomal RNA Modules. International Journal of Molecular Sciences 20:1, pages 140.
Crossref
Crossref
Chun-Yang Xu, Jun-Feng Dong, Zi-Qi Chen, Guo-Shan Ding & Zhi-Ren Fu. (2019) MiR-942-3p Promotes the Proliferation and Invasion of Hepatocellular Carcinoma Cells by Targeting MBL2. Cancer Control 26:1, pages 107327481984659.
Crossref
Crossref
Witold Światowy & Paweł P. Jagodzińśki. (2018) Molecules derived from tRNA and snoRNA: Entering the degradome pool. Biomedicine & Pharmacotherapy 108, pages 36-42.
Crossref
Crossref
José Vicente Gomes-FilhoMichael DaumeLennart Randau. (2018) Unique Archaeal Small RNAs. Annual Review of Genetics 52:1, pages 465-487.
Crossref
Crossref
Jordan K. Villa, Yichi Su, Lydia M. Contreras & Ming C. Hammond. 2018. Regulating with RNA in Bacteria and Archaea. Regulating with RNA in Bacteria and Archaea
527
545
.
Vivien Quitzke, Julia Fersch, Deniz Seyhan & Michael Rother. (2018) Selenium-dependent gene expression in Methanococcus maripaludis: Involvement of the transcriptional regulator HrsM. Biochimica et Biophysica Acta (BBA) - General Subjects 1862:11, pages 2441-2450.
Crossref
Crossref
Brittany S Morgan, Jordan E Forte & Amanda E Hargrove. (2018) Insights into the development of chemical probes for RNA. Nucleic Acids Research 46:16, pages 8025-8037.
Crossref
Crossref
Béatrice Clouet-d'Orval, Manon Batista, Marie Bouvier, Yves Quentin, Gwennaele Fichant, Anita Marchfelder & Lisa-Katharina Maier. (2018) Insights into RNA-processing pathways and associated RNA-degrading enzymes in Archaea. FEMS Microbiology Reviews 42:5, pages 579-613.
Crossref
Crossref
Lauren M Lui, Andrew V Uzilov, David L Bernick, Andrea Corredor, Todd M Lowe & Patrick P Dennis. (2018) Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species. Nucleic Acids Research 46:11, pages 5678-5691.
Crossref
Crossref
Jordan K. Villa*, Yichi Su*, Lydia M. Contreras & Ming C. Hammond. (2018) Synthetic Biology of Small RNAs and Riboswitches. Microbiology Spectrum 6:3.
Crossref
Crossref
Cristopher Segovia, Raul Arias-Carrasco, Alejandro J. Yañez, Vinicius Maracaja-Coutinho & Javier Santander. (2018) Core non-coding RNAs of Piscirickettsia salmonis. PLOS ONE 13:5, pages e0197206.
Crossref
Crossref
Diego Rivera Gelsinger & Jocelyne DiRuggiero. (2018) Transcriptional Landscape and Regulatory Roles of Small Noncoding RNAs in the Oxidative Stress Response of the Haloarchaeon Haloferax volcanii. Journal of Bacteriology 200:9.
Crossref
Crossref
Margaret W. Thairu, Siyuan Cheng & Allison K. Hansen. (2017)
A s
RNA
in a reduced mutualistic symbiont genome regulates its own gene expression
. Molecular Ecology 27:8, pages 1766-1776.
Crossref
Crossref
Anne Buddeweg, Kundan Sharma, Henning Urlaub & Ruth A. Schmitz. (2018)
sRNA
41
affects ribosome binding sites within polycistronic mRNAs in
Methanosarcina mazei
Gö1
. Molecular Microbiology 107:5, pages 595-609.
Crossref
Crossref
Gloria Payá, Vanesa Bautista, Mónica Camacho, Natalia Castejón-Fernández, Luís Alcaraz, María-José Bonete & Julia Esclapez. (2018) Small RNAs of Haloferax mediterranei: Identification and Potential Involvement in Nitrogen Metabolism. Genes 9:2, pages 83.
Crossref
Crossref
Anne Buddeweg, Michael Daume, Lennart Randau & Ruth A. Schmitz. 2018. High-Density Sequencing Applications in Microbial Molecular Genetics. High-Density Sequencing Applications in Microbial Molecular Genetics
413
442
.
Patrick R. Wright & Jens Georg. 2018. Bacterial Regulatory RNA. Bacterial Regulatory RNA
3
30
.
Erik Holmqvist & E. Gerhart H. Wagner. (2017) Impact of bacterial sRNAs in stress responses. Biochemical Society Transactions 45:6, pages 1203-1212.
Crossref
Crossref
I-Chen Kimberly Chen, Gregory J. Velicer & Yuen-Tsu Nicco Yu. (2017) Divergence of functional effects among bacterial sRNA paralogs. BMC Evolutionary Biology 17:1.
Crossref
Crossref
Mar Martinez-Pastor, Peter D. Tonner, Cynthia L. Darnell & Amy K. Schmid. (2017) Transcriptional Regulation in Archaea: From Individual Genes to Global Regulatory Networks. Annual Review of Genetics 51:1, pages 143-170.
Crossref
Crossref
Robert A. G. Huis in ‘t Veld, Gertjan Kramer, Arie van der Ende, Dave Speijer & Yvonne Pannekoek. (2017)
The Hfq regulon of
Neisseria meningitidis
. FEBS Open Bio 7:6, pages 777-788.
Crossref
Crossref
Mélodie Migault, Emmanuelle Donnou-Fournet, Marie-Dominique Galibert & David Gilot. (2017) Definition and identification of small RNA sponges: Focus on miRNA sequestration. Methods 117, pages 35-47.
Crossref
Crossref
Suhyung Cho, Min-Sik Kim, Yujin Jeong, Bo-Rahm Lee, Jung-Hyun Lee, Sung Gyun Kang & Byung-Kwan Cho. (2017) Genome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1. Scientific Reports 7:1.
Crossref
Crossref
Warren W. Burggren. 2017. Insect Epigenetics. Insect Epigenetics
1
30
.
Jana Kliemt & Jörg Soppa. 2017. RNA Metabolism and Gene Expression in Archaea. RNA Metabolism and Gene Expression in Archaea
225
242
.
Julia Babski, Karina A. Haas, Daniela Näther-Schindler, Friedhelm Pfeiffer, Konrad U. Förstner, Matthias Hammelmann, Rolf Hilker, Anke Becker, Cynthia M. Sharma, Anita Marchfelder & Jörg Soppa. (2016) Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq). BMC Genomics 17:1.
Crossref
Crossref
Nicholas Delihas. 2005. Encyclopedia of Life Sciences. Encyclopedia of Life Sciences
1
13
.
Dohyup Kim, Margaret W. Thairu & Allison K. Hansen. (2016) Novel Insights into Insect-Microbe Interactions—Role of Epigenomics and Small RNAs. Frontiers in Plant Science 7.
Crossref
Crossref
Jonathan Seguin, Patricia Otten, Loïc Baerlocher, Laurent Farinelli & Mikhail M. Pooggin. (2016) MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies. Journal of Virological Methods 233, pages 37-40.
Crossref
Crossref
V. N. Murina & A. D. Nikulin. (2016) Bacterial Small Regulatory RNAs and Hfq Protein. Biochemistry (Moscow) 80:13, pages 1647-1654.
Crossref
Crossref
Christopher Wostenberg, Pablo Ceres, Jacob T. Polaski & Robert T. Batey. (2015) A Highly Coupled Network of Tertiary Interactions in the SAM-I Riboswitch and Their Role in Regulatory Tuning. Journal of Molecular Biology 427:22, pages 3473-3490.
Crossref
Crossref
Daniela Prasse, Jens Thomsen, Rebecca De Santis, Jan Muntel, Dörte Becher & Ruth A. Schmitz. (2015) First description of small proteins encoded by spRNAs in Methanosarcina mazei strain Gö1. Biochimie 117, pages 138-148.
Crossref
Crossref
Lisa-Katharina Maier, Juliane Benz, Susan Fischer, Martina Alstetter, Katharina Jaschinski, Rolf Hilker, Anke Becker, Thorsten Allers, Jörg Soppa & Anita Marchfelder. (2015) Deletion of the Sm1 encoding motif in the lsm gene results in distinct changes in the transcriptome and enhanced swarming activity of Haloferax cells. Biochimie 117, pages 129-137.
Crossref
Crossref
Cynthia L. Darnell & Amy K. Schmid. (2015) Systems biology approaches to defining transcription regulatory networks in halophilic archaea. Methods 86, pages 102-114.
Crossref
Crossref
David Lalaouna, Marie-Claude Carrier, Szabolcs Semsey, Jean-Simon Brouard, Jing Wang, Joseph T. Wade & Eric Massé. (2015) A 3′ External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise. Molecular Cell 58:3, pages 393-405.
Crossref
Crossref
Jie Li, Lei Qi, Yang Guo, Lei Yue, Yanping Li, Weizhen Ge, Jun Wu, Wenyuan Shi & Xiuzhu Dong. (2015) Global mapping transcriptional start sites revealed both transcriptional and post-transcriptional regulation of cold adaptation in the methanogenic archaeon Methanolobus psychrophilus. Scientific Reports 5:1.
Crossref
Crossref
E. Gerhart H. Wagner & Pascale Romby. 2015.
133
208
.