RNA Biology, Volume 11, Issue 5 (2014)

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RNA Biology, Volume 11, Issue 5 (2014)

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Meeting Report

Meeting Report
Meeting report
Regulating with RNA in Bacteria 2013
Jörg Vogel, Susan Gottesman, Joel Belasco & Franz Narberhaus
Pages: 403-412
Published online: 12 Jun 2014
AbstractforMeeting report | Full Text | References | PDF (548.8 KB)
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Review

Review Article
Riboregulators and the role of Hfq in photosynthetic bacteria
Wolfgang R Hess, Bork A Berghoff, Annegret Wilde, Claudia Steglich & Gabriele Klug
Pages: 413-426
Published online: 10 Feb 2014
AbstractforRiboregulators and the role of Hfq in photosynthetic bacteria | Full Text | References | PDF (1.7 MB)
  • 1517 Views
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Review Article
RNA synthesis and purification for structural studies
Yasar Luqman Ahmed & Ralf Ficner
Pages: 427-432
Published online: 10 Feb 2014
AbstractforRNA synthesis and purification for structural studies | Full Text | References | PDF (835.8 KB)
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Review Article
Ménage à trois
Post-transcriptional control of the key enzyme for cell envelope synthesis by a base-pairing small RNA, an RNase adaptor protein, and a small RNA mimic
Yvonne Göpel, Muna A Khan & Boris Görke
Pages: 433-442
Published online: 27 Feb 2014
AbstractforMénage à trois | Full Text | References | PDF (2.3 MB)
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Review Article
Small regulatory RNAs from low-GC Gram-positive bacteria
Sabine Brantl & Reinhold Brückner
Pages: 443-456
Published online: 10 Feb 2014
AbstractforSmall regulatory RNAs from low-GC Gram-positive bacteria | Full Text | References | PDF (2.4 MB)
  • 2742 Views
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Review Article
Small non-coding RNAs in plant-pathogenic Xanthomonas spp
Ulrike Abendroth, Cornelius Schmidtke & Ulla Bonas
Pages: 457-463
Published online: 27 Feb 2014
AbstractforSmall non-coding RNAs in plant-pathogenic Xanthomonas spp | Full Text | References | PDF (722.6 KB)
  • 1452 Views
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Review Article
Small non-coding RNAs in streptomycetes
Nona Heueis, Michael-Paul Vockenhuber & Beatrix Suess
Pages: 464-469
Published online: 06 Mar 2014
AbstractforSmall non-coding RNAs in streptomycetes | Full Text | References | PDF (974.7 KB)
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Review Article
Bioinformatics of prokaryotic RNAs
Rolf Backofen, Fabian Amman, Fabrizio Costa, Sven Findeiß, Andreas S Richter & Peter F Stadler
Pages: 470-483
Published online: 02 Apr 2014
AbstractforBioinformatics of prokaryotic RNAs | Full Text | References | PDF (1.8 MB)
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Review Article
Small regulatory RNAs in Archaea
Julia Babski, Lisa-Katharina Maier, Ruth Heyer, Katharina Jaschinski, Daniela Prasse, Dominik Jäger, Lennart Randau, Ruth A Schmitz, Anita Marchfelder & Jörg Soppa
Pages: 484-493
Published online: 31 Mar 2014
AbstractforSmall regulatory RNAs in Archaea | Full Text | References | PDF (937 KB)
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Review Article
Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli
Franziska Mika & Regine Hengge
Pages: 494-507
Published online: 25 Apr 2014
AbstractforSmall RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli | Full Text | References | PDF (4.2 MB)
  • 4901 Views
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Review Article
Regulation of transcription by 6S RNAs
Insights from the Escherichia coli and Bacillus subtilis model systems
Benedikt Steuten, Philipp G Hoch, Katrin Damm, Sabine Schneider, Karen Köhler, Rolf Wagner & Roland K Hartmann
Pages: 508-521
Published online: 23 Apr 2014
AbstractforRegulation of transcription by 6S RNAs | Full Text | References | PDF (2.6 MB)
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Review Article
Computational modeling of RNA 3D structures, with the aid of experimental restraints
Marcin Magnus, Dorota Matelska, Grzegorz Łach, Grzegorz Chojnowski, Michal J Boniecki, Elzbieta Purta, Wayne Dawson, Stanislaw Dunin-Horkawicz & Janusz M Bujnicki
Pages: 522-536
Published online: 23 Apr 2014
AbstractforComputational modeling of RNA 3D structures, with the aid of experimental restraints | Full Text | References | PDF (1.9 MB)
  • 2302 Views
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Review Article
RNA binding by Hfq and ring-forming (L)Sm proteins
A trade-off between optimal sequence readout and RNA backbone conformation
Oliver Weichenrieder
Pages: 537-549
Published online: 12 May 2014
AbstractforRNA binding by Hfq and ring-forming (L)Sm proteins | Full Text | References | PDF (4.5 MB)
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Review Article
Riboregulation in plant-associated α-proteobacteria
Anke Becker, Aaron Overlöper, Jan-Philip Schlüter, Jan Reinkensmeier, Marta Robledo, Robert Giegerich, Franz Narberhaus & Elena Evguenieva-Hackenberg
Pages: 550-562
Published online: 08 Jul 2014
AbstractforRiboregulation in plant-associated α-proteobacteria | Full Text | References | PDF (2.7 MB)
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Research Paper

Article
Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti
Omar Torres-Quesada, Jan Reinkensmeier, Jan-Philip Schlüter, Marta Robledo, Alexandra Peregrina, Robert Giegerich, Nicolás Toro, Anke Becker & Jose I Jiménez-Zurdo
Pages: 563-579
Published online: 26 Feb 2014
AbstractforGenome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti | Full Text | References | PDF (3.1 MB) | Supplemental
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Article
A direct link between the global regulator PhoP and the Csr regulon in Y. pseudotuberculosis through the small regulatory RNA CsrC
Aaron M Nuss, Franziska Schuster, Ann Kathrin Heroven, Wiebke Heine, Fabio Pisano & Petra Dersch
Pages: 580-593
Published online: 02 Apr 2014
AbstractforA direct link between the global regulator PhoP and the Csr regulon in Y. pseudotuberculosis through the small regulatory RNA CsrC | Full Text | References | PDF (2.1 MB) | Supplemental
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Article
Translational control of small heat shock genes in mesophilic and thermophilic cyanobacteria by RNA thermometers
Annika Cimdins, Birgit Klinkert, Ursula Aschke-Sonnenborn, Friederike M Kaiser, Jens Kortmann & Franz Narberhaus
Pages: 594-608
Published online: 02 Apr 2014
AbstractforTranslational control of small heat shock genes in mesophilic and thermophilic cyanobacteria by RNA thermometers | Full Text | References | PDF (2.6 MB) | Supplemental
  • 1639 Views
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Article
Preparation of modified long-mer RNAs and analysis of FMN binding to the ypaA aptamer from B. subtilis
Jennifer Frommer, Robert Hieronymus, Tamil Selvi Arunachalam, Sabine Heeren, Maria Jenckel, Anne Strahl, Bettina Appel & Sabine Müller
Pages: 609-623
Published online: 26 Mar 2014
AbstractforPreparation of modified long-mer RNAs and analysis of FMN binding to the ypaA aptamer from B. subtilis | Full Text | References | PDF (1.4 MB) | Supplemental
  • 1109 Views
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Article
Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region
Aaron Overlöper, Alexander Kraus, Rosemarie Gurski, Patrick R Wright, Jens Georg, Wolfgang R Hess & Franz Narberhaus
Pages: 624-640
Published online: 13 May 2014
AbstractforTwo separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region | Full Text | References | PDF (6.6 MB) | Supplemental
  • 1143 Views
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Article
Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation
Ivana Bilusic, Niko Popitsch, Philipp Rescheneder, Renée Schroeder & Meghan Lybecker
Pages: 641-654
Published online: 12 Jun 2014
AbstractforRevisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation | Full Text | References | PDF (4.3 MB) | Supplemental
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Article
The importance of helix P1 stability for structural pre-organization and ligand binding affinity of the adenine riboswitch aptamer domain
Senada Nozinovic, Anke Reining, Yong-Boum Kim, Jonas Noeske, Kai Schlepckow, Jens Wöhnert & Harald Schwalbe
Pages: 655-666
Published online: 12 Jun 2014
AbstractforThe importance of helix P1 stability for structural pre-organization and ligand binding affinity of the adenine riboswitch aptamer domain | Full Text | References | PDF (5 MB) | Supplemental
  • 970 Views
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