16,550
Views
207
CrossRef citations to date
0
Altmetric
Research Articles

Peptide-like and small-molecule inhibitors against Covid-19

, , , & ORCID Icon
Pages 2904-2913 | Received 06 Apr 2020, Accepted 14 Apr 2020, Published online: 06 May 2020

Keep up to date with the latest research on this topic with citation updates for this article.

Read on this site (79)

Alhanouf I. Al-Harbi, Asad Ullah, Taghreed N. Almanaa, Farah Gul, Saifullah Khan, Yasir Waheed, Mahboob Ul Haq, Riaz Muhammad, Muhammad Khurram, Ameen Ullah & Sajjad Ahmad. (2023) A chemoinformatic-biophysics based approach to identify novel anti-virulent compounds against Pseudomonas aeruginosa disulfide-bond protein A1. Journal of Biomolecular Structure and Dynamics 0:0, pages 1-10.
Read now
Nusrat Shafiq, Aqsa Jannat, Huma Munir, Maryam Rashid & Shagufta Parveen. (2023) Exploring the potential of FDA approved anti-diabetic drugs for repurposing against COVID-19: a core combination of multiple computational strategies and integrated artificial intelligence. Journal of Biomolecular Structure and Dynamics 0:0, pages 1-21.
Read now
Abhishek Kumar Verma, Md. Shahadat Hossain, SK. Faisal Ahmed, Nasir Hussain, Mohammad Ashid, Sudhir K. Upadhyay, Naveen Kumar Vishvakarma, Ali Asger Bhojiya & Sandeep Kumar Srivastava. (2023) “In silico identification of ethoxy phthalimide pyrazole derivatives as IL-17A and IL-18 targeted gouty arthritis agents”. Journal of Biomolecular Structure and Dynamics 41:10, pages 4681-4695.
Read now
Neha Kansal, Pravin Garg & Omendra Singh. (2023) Temperature-Based Topological Indices and QSPR Analysis of COVID-19 Drugs. Polycyclic Aromatic Compounds 43:5, pages 4148-4169.
Read now
Neda Fayyazi, Tahereh Mostashari-Rad, Jahan B. Ghasemi, Mehran Mirabzadeh Ardakani & Farzad Kobarfard. (2022) Molecular dynamics simulation, 3D-pharmacophore and scaffold hopping analysis in the design of multi-target drugs to inhibit potential targets of COVID-19. Journal of Biomolecular Structure and Dynamics 40:22, pages 11787-11808.
Read now
Abhishek Kumar Verma, Sk. Faisal Ahmed, Md. Shahadat Hossain, Ali Asger Bhojiya, Ankita Mathur, Sudhir K. Upadhyay, Abhishek K. Srivastava, Naveen Kumar Vishvakarma, Mayadhar Barik, Md. Mizanur Rahaman & Newaz Mohammed Bahadur. (2022) Molecular docking and simulation studies of flavonoid compounds against PBP-2a of methicillin‐resistant Staphylococcus aureus . Journal of Biomolecular Structure and Dynamics 40:21, pages 10561-10577.
Read now
Venkatramanan Varadharajan, Gokulakrishnan Sivasundari Arumugam & Sethupathi Shanmugam. (2022) Isatin-based virtual high throughput screening, molecular docking, DFT, QM/MM, MD and MM-PBSA study of novel inhibitors of SARS-CoV-2 main protease. Journal of Biomolecular Structure and Dynamics 40:17, pages 7852-7867.
Read now
Dennis C. Copertino$suffix/text()$suffix/text(), Bruno C. Casado Lima, Rodrigo R. R. Duarte, Timothy R. Powell, Christopher E. Ormsby, Timothy Wilkin, Roy M. Gulick, Miguel de Mulder Rougvie & Douglas F. Nixon. (2022) Antiretroviral drug activity and potential for pre-exposure prophylaxis against COVID-19 and HIV infection. Journal of Biomolecular Structure and Dynamics 40:16, pages 7367-7380.
Read now
Shiv Rakesh Naik, Prashant Bharadwaj, Nadia Dingelstad, Subha Kalyaanamoorthy, Subhash C Mandal, Aravindhan Ganesan, Debprasad Chattopadhyay & Partha Palit. (2022) Structure-based virtual screening, molecular dynamics and binding affinity calculations of some potential phytocompounds against SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 40:15, pages 6921-6938.
Read now
N. R. Jena, Suyash Pant & Hemant Kumar Srivastava. (2022) Artificially expanded genetic information systems (AEGISs) as potent inhibitors of the RNA-dependent RNA polymerase of the SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 40:14, pages 6381-6397.
Read now
Özge Çolakoğlu Havare. (2022) Quantitative Structure Analysis of Some Molecules in Drugs Used in the Treatment of COVID-19 with Topological Indices. Polycyclic Aromatic Compounds 42:8, pages 5249-5260.
Read now
Anchala Kumari, Vikrant Singh Rajput, Priya Nagpal, Himanshi Kukrety, Sonam Grover & Abhinav Grover. (2022) Dual inhibition of SARS-CoV-2 spike and main protease through a repurposed drug, rutin. Journal of Biomolecular Structure and Dynamics 40:11, pages 4987-4999.
Read now
Venkateshwaran Thamaraiselvan & Ravichandiran Velayutham. (2022) The putative binding site and SAR rationalization of small molecules against glucagon-like peptide-1 receptor using homology model and crystal structures: a comparative study. Journal of Biomolecular Structure and Dynamics 40:5, pages 2038-2052.
Read now
Mohamed A. Hendaus & Fatima A. Jomha. (2022) From COVID-19 to clot: the involvement of the complement system. Journal of Biomolecular Structure and Dynamics 40:4, pages 1909-1914.
Read now
Heba Ali Hassan, Usama Ramadan Abdelmohsen, Omar M. Aly, Samar Y. Desoukey, Khaled M. Mohamed & Mohamed S. Kamel. (2022) Potential of Ficus microcarpa metabolites against SARS-CoV-2 main protease supported by docking studies. Natural Product Research 36:4, pages 994-998.
Read now
Shubhangi Kandwal & Darren Fayne. (2022) Repurposing drugs for treatment of SARS-CoV-2 infection: computational design insights into mechanisms of action. Journal of Biomolecular Structure and Dynamics 40:3, pages 1316-1330.
Read now
Shivanika C, Deepak Kumar S.Venkataraghavan Ragunathan, Pawan Tiwari, Sumitha A.Brindha Devi P. (2022) Molecular docking, validation, dynamics simulations, and pharmacokinetic prediction of natural compounds against the SARS-CoV-2 main-protease. Journal of Biomolecular Structure and Dynamics 40:2, pages 585-611.
Read now
Zouhair Elkarhat, Hicham Charoute, Lamiae Elkhattabi, Abdelhamid Barakat & Hassan Rouba. (2022) Potential inhibitors of SARS-cov-2 RNA dependent RNA polymerase protein: molecular docking, molecular dynamics simulations and MM-PBSA analyses. Journal of Biomolecular Structure and Dynamics 40:1, pages 361-374.
Read now
Vipul Kumar, Jaspreet Kaur Dhanjal, Priyanshu Bhargava, Ashish Kaul, Jia Wang, Huayue Zhang, Sunil C. Kaul, Renu Wadhwa & Durai Sundar. (2022) Withanone and Withaferin-A are predicted to interact with transmembrane protease serine 2 (TMPRSS2) and block entry of SARS-CoV-2 into cells. Journal of Biomolecular Structure and Dynamics 40:1, pages 1-13.
Read now
Soumita Mukherjee, Subrata Dasgupta, Tapasendra Adhikary, Utpal Adhikari & Sujit Sankar Panja. (2021) Structural insight to hydroxychloroquine-3C-like proteinase complexation from SARS-CoV-2: inhibitor modelling study through molecular docking and MD-simulation study. Journal of Biomolecular Structure and Dynamics 39:18, pages 7322-7334.
Read now
Viswanathan Vijayan, Pradeep Pant, Naval Vikram, Punit Kaur, T. P. Singh, Sujata Sharma & Pradeep Sharma. (2021) Identification of promising drug candidates against NSP16 of SARS-CoV-2 through computational drug repurposing study. Journal of Biomolecular Structure and Dynamics 39:17, pages 6713-6727.
Read now
Pradeep Sharma, Viswanathan Vijayan, Pradeep Pant, Mohita Sharma, Naval Vikram, Punit Kaur, T. P. Singh & Sujata Sharma. (2021) Identification of potential drug candidates to combat COVID-19: a structural study using the main protease (mpro) of SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 39:17, pages 6649-6659.
Read now
Nima Razzaghi-Asl, Ahmad Ebadi, Sara Shahabipour & Danial Gholamin. (2021) Identification of a potential SARS-CoV2 inhibitor via molecular dynamics simulations and amino acid decomposition analysis. Journal of Biomolecular Structure and Dynamics 39:17, pages 6633-6648.
Read now
Preeti Pandey, Jitendra Subhash Rane, Aroni Chatterjee, Abhijeet Kumar, Rajni Khan, Amresh Prakash & Shashikant Ray. (2021) Targeting SARS-CoV-2 spike protein of COVID-19 with naturally occurring phytochemicals: an in silico study for drug development. Journal of Biomolecular Structure and Dynamics 39:16, pages 6306-6316.
Read now
Shafi Mahmud, Mohammad Abu Raihan Uddin, Meemtaheena Zaman, Khaled Mahmud Sujon, Md. Ekhtiar Rahman, Mobasshir Noor Shehab, Ariful Islam, Md. Wasim Alom, Al Amin, Al Shahriar Akash & Md. Abu Saleh. (2021) Molecular docking and dynamics study of natural compound for potential inhibition of main protease of SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 39:16, pages 6281-6289.
Read now
Sinthyia Ahmed, Rumana Mahtarin, Sayeda Samina Ahmed, Shaila Akter, Md. Shamiul Islam, Abdulla Al Mamun, Rajib Islam, Md Nayeem Hossain, Md Ackas Ali, Mossammad U. C. Sultana, MD. Rimon Parves, M. Obayed Ullah & Mohammad A. Halim. (2021) Investigating the binding affinity, interaction, and structure-activity-relationship of 76 prescription antiviral drugs targeting RdRp and Mpro of SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 39:16, pages 6290-6305.
Read now
Devashan Naidoo, Ayan Roy, Pallab Kar, Taurai Mutanda & Akash Anandraj. (2021) Cyanobacterial metabolites as promising drug leads against the Mpro and PLpro of SARS-CoV-2: an in silico analysis. Journal of Biomolecular Structure and Dynamics 39:16, pages 6218-6230.
Read now
Jitendra Subhash Rane, Preeti Pandey, Aroni Chatterjee, Rajni Khan, Abhijeet Kumar, Amresh Prakash & Shashikant Ray. (2021) Targeting virus–host interaction by novel pyrimidine derivative: an in silico approach towards discovery of potential drug against COVID-19. Journal of Biomolecular Structure and Dynamics 39:15, pages 5768-5778.
Read now
Gabriela de Lima Menezes & Roosevelt Alves da Silva. (2021) Identification of potential drugs against SARS-CoV-2 non-structural protein 1 (nsp1). Journal of Biomolecular Structure and Dynamics 39:15, pages 5657-5667.
Read now
Alexander M. Andrianov, Yuri V. Kornoushenko, Anna D. Karpenko, Ivan P. Bosko & Alexander V. Tuzikov. (2021) Computational discovery of small drug-like compounds as potential inhibitors of SARS-CoV-2 main protease. Journal of Biomolecular Structure and Dynamics 39:15, pages 5779-5791.
Read now
Shruti Koulgi, Vinod Jani, Mallikarjunachari Uppuladinne, Uddhavesh Sonavane, Asheet Kumar Nath, Hemant Darbari & Rajendra Joshi. (2021) Drug repurposing studies targeting SARS-CoV-2: an ensemble docking approach on drug target 3C-like protease (3CLpro). Journal of Biomolecular Structure and Dynamics 39:15, pages 5735-5755.
Read now
Manish Kumar Tripathi, Pushpendra Singh, Sujata Sharma, Tej P. Singh, A. S. Ethayathulla & Punit Kaur. (2021) Identification of bioactive molecule from Withania somnifera (Ashwagandha) as SARS-CoV-2 main protease inhibitor. Journal of Biomolecular Structure and Dynamics 39:15, pages 5668-5681.
Read now
Abdullah G. Al-Sehemi, Mehboobali Pannipara, Rishikesh S. Parulekar, Omkar Patil, Prafulla B. Choudhari, M. S. Bhatia, P. K. Zubaidha & Yasinalli Tamboli. (2021) Potential of NO donor furoxan as SARS-CoV-2 main protease (Mpro) inhibitors: in silico analysis. Journal of Biomolecular Structure and Dynamics 39:15, pages 5804-5818.
Read now
Santanu Sasidharan, Chandrabose Selvaraj, Sanjeev Kumar Singh, Vikash Kumar Dubey, Sachin Kumar, Arsenio M. Fialho & Prakash Saudagar. (2021) Bacterial protein azurin and derived peptides as potential anti-SARS-CoV-2 agents: insights from molecular docking and molecular dynamics simulations. Journal of Biomolecular Structure and Dynamics 39:15, pages 5706-5721.
Read now
Iruthayaraj Ancy, Mugudeeswaran Sivanandam & Poomani Kumaradhas. (2021) Possibility of HIV-1 protease inhibitors-clinical trial drugs as repurposed drugs for SARS-CoV-2 main protease: a molecular docking, molecular dynamics and binding free energy simulation study. Journal of Biomolecular Structure and Dynamics 39:15, pages 5368-5375.
Read now
Vankudavath Raju Naik, Manne Munikumar, Ungarala Ramakrishna, Medithi Srujana, Giridhar Goudar, Pittla Naresh, Boiroju Naveen Kumar & Rajkumar Hemalatha. (2021) Remdesivir (GS-5734) as a therapeutic option of 2019-nCOV main protease – in silico approach. Journal of Biomolecular Structure and Dynamics 39:13, pages 4701-4714.
Read now
Pallab Kar, Neeta Raj Sharma, Bhupender Singh, Arnab Sen & Ayan Roy. (2021) Natural compounds from Clerodendrum spp. as possible therapeutic candidates against SARS-CoV-2: An in silico investigation. Journal of Biomolecular Structure and Dynamics 39:13, pages 4774-4785.
Read now
Sk. Abdul Amin, Kalyan Ghosh, Shovanlal Gayen & Tarun Jha. (2021) Chemical-informatics approach to COVID-19 drug discovery: Monte Carlo based QSAR, virtual screening and molecular docking study of some in-house molecules as papain-like protease (PLpro) inhibitors. Journal of Biomolecular Structure and Dynamics 39:13, pages 4764-4773.
Read now
K. G. Arun, C. S Sharanya, J. Abhithaj, Dileep Francis & C. Sadasivan. (2021) Drug repurposing against SARS-CoV-2 using E-pharmacophore based virtual screening, molecular docking and molecular dynamics with main protease as the target. Journal of Biomolecular Structure and Dynamics 39:13, pages 4647-4658.
Read now
Elham Tazikeh-Lemeski, Sajad Moradi, Rahim Raoufi, Mohsen Shahlaei, Mehr Ali Mahmood Janlou & Samaneh Zolghadri. (2021) Targeting SARS-COV-2 non-structural protein 16: a virtual drug repurposing study. Journal of Biomolecular Structure and Dynamics 39:13, pages 4633-4646.
Read now
D. S. N. B. K. Prasanth, Manikanta Murahari, Vivek Chandramohan, Siva Prasad Panda, Lakshmana Rao Atmakuri & Chakravarthi Guntupalli. (2021) In silico identification of potential inhibitors from Cinnamon against main protease and spike glycoprotein of SARS CoV-2. Journal of Biomolecular Structure and Dynamics 39:13, pages 4618-4632.
Read now
Selvaraj Alagu Lakshmi, Raja Mohamed Beema Shafreen, Arumugam Priya & Karutha Pandian Shunmugiah. (2021) Ethnomedicines of Indian origin for combating COVID-19 infection by hampering the viral replication: using structure-based drug discovery approach. Journal of Biomolecular Structure and Dynamics 39:13, pages 4594-4609.
Read now
Chandrabose Selvaraj, Dhurvas Chandrasekaran Dinesh, Umesh Panwar, Rajaram Abhirami, Evzen Boura & Sanjeev Kumar Singh. (2021) Structure-based virtual screening and molecular dynamics simulation of SARS-CoV-2 Guanine-N7 methyltransferase (nsp14) for identifying antiviral inhibitors against COVID-19. Journal of Biomolecular Structure and Dynamics 39:13, pages 4582-4593.
Read now
Adnane Aouidate, Adib Ghaleb, Samir Chtita, Mohammed Aarjane, Abdellah Ousaa, Hamid Maghat, Abdelouahid Sbai, M’barek Choukrad, Mohammed Bouachrine & Tahar Lakhlifi. (2021) Identification of a novel dual-target scaffold for 3CLpro and RdRp proteins of SARS-CoV-2 using 3D-similarity search, molecular docking, molecular dynamics and ADMET evaluation. Journal of Biomolecular Structure and Dynamics 39:12, pages 4522-4535.
Read now
Rohitash Yadav, Mohammed Imran, Puneet Dhamija, Kapil Suchal & Shailendra Handu. (2021) Virtual screening and dynamics of potential inhibitors targeting RNA binding domain of nucleocapsid phosphoprotein from SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 39:12, pages 4433-4448.
Read now
Ashimiyu B. Durojaiye, John-Ross D. Clarke, George A. Stamatiades & Can Wang. (2021) Repurposing cefuroxime for treatment of COVID-19: a scoping review of in silico studies. Journal of Biomolecular Structure and Dynamics 39:12, pages 4547-4554.
Read now
Mark Tristan J. Quimque, Kin Israel R. Notarte, Rey Arturo T. Fernandez, Mark Andrew O. Mendoza, Rhenz Alfred D. Liman, Justin Allen K. Lim, Luis Agustin E. Pilapil, Jehiel Karsten H. Ong, Adriel M. Pastrana, Abbas Khan, Dong-Qing Wei & Allan Patrick G. Macabeo. (2021) Virtual screening-driven drug discovery of SARS-CoV2 enzyme inhibitors targeting viral attachment, replication, post-translational modification and host immunity evasion infection mechanisms. Journal of Biomolecular Structure and Dynamics 39:12, pages 4316-4333.
Read now
Sajjad Ahmad, Hyder Wajid Abbasi, Sara Shahid, Sana Gul & Sumra Wajid Abbasi. (2021) Molecular docking, simulation and MM-PBSA studies of nigella sativa compounds: a computational quest to identify potential natural antiviral for COVID-19 treatment. Journal of Biomolecular Structure and Dynamics 39:12, pages 4225-4233.
Read now
Muhammad Hamza, Ashaq Ali, Suliman Khan, Saeed Ahmed, Zarlish Attique, Saad Ur Rehman, Ayesha Khan, Hussain Ali, Muhammad Rizwan, Anum Munir, Arshad Mehmood Khan, Faiza Siddique, Azhar Mehmood, Faisal Nouroz & Sajid Khan. (2021) nCOV-19 peptides mass fingerprinting identification, binding, and blocking of inhibitors flavonoids and anthraquinone of Moringa oleifera and hydroxychloroquine. Journal of Biomolecular Structure and Dynamics 39:11, pages 4089-4099.
Read now
Firoz Anwar, Hisham N. Altayb, Fahad A. Al-Abbasi, Abdulrahman L. Al-Malki, Mohammad Amjad Kamal & Vikas Kumar. (2021) Antiviral effects of probiotic metabolites on COVID-19. Journal of Biomolecular Structure and Dynamics 39:11, pages 4175-4184.
Read now
Vipul Kumar, Jaspreet Kaur Dhanjal, Sunil C. Kaul, Renu Wadhwa & Durai Sundar. (2021) Withanone and caffeic acid phenethyl ester are predicted to interact with main protease (Mpro) of SARS-CoV-2 and inhibit its activity. Journal of Biomolecular Structure and Dynamics 39:11, pages 3842-3854.
Read now
Anuj Kumar, Gourav Choudhir, Sanjeev Kumar Shukla, Mansi Sharma, Pankaj Tyagi, Arvind Bhushan & Madhu Rathore. (2021) Identification of phytochemical inhibitors against main protease of COVID-19 using molecular modeling approaches. Journal of Biomolecular Structure and Dynamics 39:10, pages 3760-3770.
Read now
Satyajit Beura & Prabhakar Chetti. (2021) In-silico strategies for probing chloroquine based inhibitors against SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 39:10, pages 3747-3759.
Read now
Chinmayee Choudhury. (2021) Fragment tailoring strategy to design novel chemical entities as potential binders of novel corona virus main protease. Journal of Biomolecular Structure and Dynamics 39:10, pages 3733-3746.
Read now
K. Abraham Peele, T. Srihansa, S. Krupanidhi, Vijaya Sai Ayyagari & T. C. Venkateswarulu. (2021) Design of multi-epitope vaccine candidate against SARS-CoV-2: a in-silico study. Journal of Biomolecular Structure and Dynamics 39:10, pages 3793-3801.
Read now
Muhammad Tahir Khan, Arif Ali, Qiankun Wang, Muhammad Irfan, Abbas Khan, Muhammad Tariq Zeb, Yu-Juan Zhang, Sathishkumar Chinnasamy & Dong-Qing Wei. (2021) Marine natural compounds as potents inhibitors against the main protease of SARS-CoV-2—a molecular dynamic study. Journal of Biomolecular Structure and Dynamics 39:10, pages 3627-3637.
Read now
Saurov Mahanta, Purvita Chowdhury, Neelutpal Gogoi, Nabajyoti Goswami, Debajit Borah, Rupesh Kumar, Dipak Chetia, Probodh Borah, Alak K. Buragohain & Bhaskarjyoti Gogoi. (2021) Potential anti-viral activity of approved repurposed drug against main protease of SARS-CoV-2: an in silico based approach. Journal of Biomolecular Structure and Dynamics 39:10, pages 3802-3811.
Read now
Lovika Mittal, Anita Kumari, Mitul Srivastava, Mrityunjay Singh & Shailendra Asthana. (2021) Identification of potential molecules against COVID-19 main protease through structure-guided virtual screening approach. Journal of Biomolecular Structure and Dynamics 39:10, pages 3662-3680.
Read now
Abdul Basit, Tanveer Ali & Shafiq Ur Rehman. (2021) Truncated human angiotensin converting enzyme 2; a potential inhibitor of SARS-CoV-2 spike glycoprotein and potent COVID-19 therapeutic agent. Journal of Biomolecular Structure and Dynamics 39:10, pages 3605-3614.
Read now
Md Fulbabu Sk, Rajarshi Roy, Nisha Amarnath Jonniya, Sayan Poddar & Parimal Kar. (2021) Elucidating biophysical basis of binding of inhibitors to SARS-CoV-2 main protease by using molecular dynamics simulations and free energy calculations. Journal of Biomolecular Structure and Dynamics 39:10, pages 3649-3661.
Read now
Mohamed A. Hendaus. (2021) Remdesivir in the treatment of coronavirus disease 2019 (COVID-19): a simplified summary. Journal of Biomolecular Structure and Dynamics 39:10, pages 3787-3792.
Read now
Alireza Paniri, Mohammad Mahdi Hosseini & Haleh Akhavan-Niaki. (2021) First comprehensive computational analysis of functional consequences of TMPRSS2 SNPs in susceptibility to SARS-CoV-2 among different populations. Journal of Biomolecular Structure and Dynamics 39:10, pages 3576-3593.
Read now
Khalid El Asnaoui & Youness Chawki. (2021) Using X-ray images and deep learning for automated detection of coronavirus disease. Journal of Biomolecular Structure and Dynamics 39:10, pages 3615-3626.
Read now
Mohammad Mahdi Nejadi Babadaei, Anwarul Hasan, Samir Haj Bloukh, Zehra Edis, Majid Sharifi, Ehsan Kachooei & Mojtaba Falahati. (2021) The expression level of angiotensin-converting enzyme 2 determines the severity of COVID-19: lung and heart tissue as targets. Journal of Biomolecular Structure and Dynamics 39:10, pages 3780-3786.
Read now
Mohammad Mahdi Nejadi Babadaei, Anwarul Hasan, Yasaman Vahdani, Samir Haj Bloukh, Majid Sharifi, Ehsan Kachooei, Setareh Haghighat & Mojtaba Falahati. (2021) Development of remdesivir repositioning as a nucleotide analog against COVID-19 RNA dependent RNA polymerase. Journal of Biomolecular Structure and Dynamics 39:10, pages 3771-3779.
Read now
Akinwunmi O. Adeoye, Babatunde Joseph Oso, Ige Francis Olaoye, Habibu Tijjani & Ahmed I. Adebayo. (2021) Repurposing of chloroquine and some clinically approved antiviral drugs as effective therapeutics to prevent cellular entry and replication of coronavirus. Journal of Biomolecular Structure and Dynamics 39:10, pages 3469-3479.
Read now
Gideon A. Gyebi, Olalekan B. Ogunro, Adegbenro P. Adegunloye, Oludare M. Ogunyemi & Saheed O. Afolabi. (2021) Potential inhibitors of coronavirus 3-chymotrypsin-like protease (3CLpro): an in silico screening of alkaloids and terpenoids from African medicinal plants. Journal of Biomolecular Structure and Dynamics 39:9, pages 3396-3408.
Read now
Naún Lobo-Galo, Manuel Terrazas-López, Alejandro Martínez-Martínez & Ángel Gabriel Díaz-Sánchez. (2021) FDA-approved thiol-reacting drugs that potentially bind into the SARS-CoV-2 main protease, essential for viral replication. Journal of Biomolecular Structure and Dynamics 39:9, pages 3419-3427.
Read now
Khattab Al-Khafaji, Dunya AL-Duhaidahawi & Tugba Taskin Tok. (2021) Using integrated computational approaches to identify safe and rapid treatment for SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 39:9, pages 3387-3395.
Read now
Sourav Das, Sharat Sarmah, Sona Lyndem & Atanu Singha Roy. (2021) An investigation into the identification of potential inhibitors of SARS-CoV-2 main protease using molecular docking study. Journal of Biomolecular Structure and Dynamics 39:9, pages 3347-3357.
Read now
Imane Abdelli, Faiçal Hassani, Sohayb Bekkel Brikci & Said Ghalem. (2021) In silico study the inhibition of angiotensin converting enzyme 2 receptor of COVID-19 by Ammoides verticillata components harvested from Western Algeria. Journal of Biomolecular Structure and Dynamics 39:9, pages 3263-3276.
Read now
Hussain Mustatab Wahedi, Sajjad Ahmad & Sumra Wajid Abbasi. (2021) Stilbene-based natural compounds as promising drug candidates against COVID-19. Journal of Biomolecular Structure and Dynamics 39:9, pages 3225-3234.
Read now
Saurabh K. Sinha, Anshul Shakya, Satyendra K. Prasad, Shashikant Singh, Nilambari S. Gurav, Rupali S. Prasad & Shailendra S. Gurav. (2021) An in-silico evaluation of different Saikosaponins for their potency against SARS-CoV-2 using NSP15 and fusion spike glycoprotein as targets. Journal of Biomolecular Structure and Dynamics 39:9, pages 3244-3255.
Read now
Rajib Islam, Md. Rimon Parves, Archi Sundar Paul, Nizam Uddin, Md. Sajjadur Rahman, Abdulla Al Mamun, Md. Nayeem Hossain, Md. Ackas Ali & Mohammad A. Halim. (2021) A molecular modeling approach to identify effective antiviral phytochemicals against the main protease of SARS-CoV-2. Journal of Biomolecular Structure and Dynamics 39:9, pages 3213-3224.
Read now
Abdo A. Elfiky. (2021) SARS-CoV-2 RNA dependent RNA polymerase (RdRp) targeting: an in silico perspective. Journal of Biomolecular Structure and Dynamics 39:9, pages 3204-3212.
Read now
João Vitor Silva, Soraya da Silva Santos, M. Teresa Machini & Jeanine Giarolla. (2021) Neglected tropical diseases and infectious illnesses: potential targeted peptides employed as hits compounds in drug design. Journal of Drug Targeting 29:3, pages 269-283.
Read now

Articles from other publishers (128)

T.M. Kavya, Lakshmi V. Menon, K.K. Mohammed Hashim & E. Manoj. (2024) Spectral, band gap and DFT studies of novel cobalt (II) complexes of N(4)-cyclohexylthiosemicarbazones: Molecular docking with DNA and SARS-CoV-2 Mpro. Journal of Molecular Structure 1295, pages 136802.
Crossref
Goverdhan Lanka, Revanth Bathula, Balaram Ghosh & Sarita Rajender Potlapally. (2023) Identification of potential antiviral lead inhibitors against SARS-CoV-2 main protease: Structure-guided virtual screening, docking, ADME, and MD Simulation based approach. Artificial Intelligence Chemistry 1:2, pages 100015.
Crossref
Ramin Naderi Beni, Parisa Elyasi-Ebli, Sajjad Gharaghani & Arefeh Seyedarabi. (2023) In silico studies of anti-oxidative and hot temperament-based phytochemicals as natural inhibitors of SARS-CoV-2 Mpro. PLOS ONE 18:11, pages e0295014.
Crossref
James Stewart, Jakaria Shawon, Md Ackas Ali, Blaise Williams, A. D. A. Shahinuzzaman, Sharmin Akther Rupa, Taha Al‐Adhami, Ruoqing Jia, Cole Bourque, Ryan Faddis, Kaylee Stone, Md Abu Sufian, Rajib Islam, Andrew C. McShan, Khondaker Miraz Rahman & Mohammad A. Halim. (2023) Antiviral peptides inhibiting the main protease of SARS‐CoV‐2 investigated by computational screening and in vitro protease assay. Journal of Peptide Science.
Crossref
Abel Chandra, Alok Sharma, Iman Dehzangi, Tatsuhiko Tsunoda & Abdul Sattar. (2023) PepCNN deep learning tool for predicting peptide binding residues in proteins using sequence, structural, and language model features. Scientific Reports 13:1.
Crossref
Yasir Arfat, Imran Zafar, Sheikh Arslan Sehgal, Mazhar Ayaz, Muhammad Sajid, Jamal Muhammad Khan, Muhammad Ahsan, Mohd Ashraf Rather, Azmat Ali Khan, Jamilah M. Alshehri, Shopnil Akash, Eugenie Nepovimova, Kamil Kuca & Rohit Sharma. (2023) In silico designing of multiepitope-based-peptide (MBP) vaccine against MAPK protein express for Alzheimer's disease in Zebrafish. Heliyon 9:11, pages e22204.
Crossref
Mariana Pereira & Nuno Vale. (2023) A Review Concerning the Use of Etravirine and Darunavir in Translational Medicine. International Journal of Translational Medicine 3:4, pages 461-478.
Crossref
Ali Dekir, Malika Berredjem, Khadidja Otmane Rachedi, Rania Bahadi, Seif Eddine Djouad, Sofiane Bouacida, Ismahene Grib, Nasir Iqbal, Rayenne Redjemia & Meriem Boussaker. (2023) X-ray crystallographic study, molecular docking, molecular dynamics and DFT/ADMET analyses of carboxylsulfamides. Journal of Molecular Structure 1289, pages 135831.
Crossref
Dingfeng Luo, Zhendong Bai, Haodong Bai, Na Liu, Jincai Han, Changsheng Ma, Di Wu, Lianyang Bai & Zuren Li. (2023) A first-in-class dimethyl 2-acetamido terephthalate inhibitor targeting Conyza canadensis SHMT1 with a novel herbicidal mode-of-action. Journal of Advanced Research.
Crossref
Noorul Samsoon Maharifa Haja Mohaideen, S. Vaani & S. Hemalatha. (2023) Antimicrobial Peptides. Current Pharmacology Reports 9:6, pages 433-454.
Crossref
Momina Shanwaz Mohammad & Perugu Shyam. (2023) Bioactivity studies and Insilico studies of the isolated compound from ancient plant Vitex negundo against breast cancer. Journal of Molecular Structure 1288, pages 135762.
Crossref
Ranjan K. Mohapatra, Ahmed Mahal, Azaj Ansari, Manjeet Kumar, Jyoti Prakash Guru, Ashish K. Sarangi, Aly Abdou, Snehasish Mishra, Mohammed Aljeldah, Bashayer M. AlShehail, Mohammed Alissa, Mohammed Garout, Ahmed Alsayyah, Ahmad A. Alshehri, Ahmed Saif, Abdulaziz Alqahtani, Fahd A. Alshehri, Aref A. Alamri & Ali A. Rabaan. (2023) Comparison of the binding energies of approved mpox drugs and phytochemicals through molecular docking, molecular dynamics simulation, and ADMET studies: An in silico approach. Journal of Biosafety and Biosecurity 5:3, pages 118-132.
Crossref
Rajarshi Roy, Md Fulbabu Sk, Omprakash Tanwar & Parimal Kar. (2022) Computational studies indicated the effectiveness of human metabolites against SARS-Cov-2 main protease. Molecular Diversity 27:4, pages 1587-1602.
Crossref
Mateus Sá Magalhães Serafim, Simone Queiroz Pantaleão, Elany Barbosa da Silva, James H. McKerrow, Anthony J. O’Donoghue, Bruno Eduardo Fernandes Mota, Kathia Maria Honorio & Vinícius Gonçalves Maltarollo. (2023) The importance of good practices and false hits for QSAR-driven virtual screening real application: a SARS-CoV-2 main protease (Mpro) case study. Frontiers in Drug Discovery 3.
Crossref
Mamoona Sarfaraz, Faiqa Anjum, Duaa Zahra, Ayesha Maqsood & Usman Ali Ashfaq. (2023) Recent Updates on Peptide Molecules in Drug and Vaccine Development. Current Pharmaceutical Design 29:20, pages 1564-1578.
Crossref
Konstantinos G. Kalamatianos. (2022) In silico drug repurposing for coronavirus (COVID-19): screening known HCV drugs against the SARS-CoV-2 spike protein bound to angiotensin-converting enzyme 2 (ACE2) (6M0J). Molecular Diversity 27:3, pages 1087-1099.
Crossref
Uzma Afreen, Ushna Afreen & Daraksha Bano. 2023. COVID-19: Origin, Impact and Management (Part 2). COVID-19: Origin, Impact and Management (Part 2) 1 21 .
Amir Rehman, Huanlai Xing, Muhammad Adnan khan, Mehboob Hussain, Abid Hussain & Nighat Gulzar. (2023) Emerging technologies for COVID (ET-CoV) detection and diagnosis: Recent advancements, applications, challenges, and future perspectives. Biomedical Signal Processing and Control 83, pages 104642.
Crossref
Shubhangi Kandwal & Darren Fayne. (2023) Genetic conservation across SARS-CoV-2 non-structural proteins – Insights into possible targets for treatment of future viral outbreaks. Virology 581, pages 97-115.
Crossref
Cecilia Pozzi, Anne Vanet, Valeria Francesconi, Lorenzo Tagliazucchi, Giusy Tassone, Alberto Venturelli, Francesca Spyrakis, Marco MazzoranaMaria P. Costi & Michele Tonelli. (2023) Antitarget, Anti-SARS-CoV-2 Leads, Drugs, and the Drug Discovery–Genetics Alliance Perspective. Journal of Medicinal Chemistry 66:6, pages 3664-3702.
Crossref
Trung Hai Nguyen, Quynh Mai Thai, Minh Quan Pham, Pham Thi Hong Minh & Huong Thi Thu Phung. (2023) Machine learning combines atomistic simulations to predict SARS-CoV-2 Mpro inhibitors from natural compounds. Molecular Diversity.
Crossref
Pedro Martins, Diego Mariano, Frederico Chaves Carvalho, Luana Luiza Bastos, Lucas Moraes, Vivian Paixão & Raquel Cardoso de Melo-Minardi. (2023) Propedia v2.3: A novel representation approach for the peptide-protein interaction database using graph-based structural signatures. Frontiers in Bioinformatics 3.
Crossref
Subodh Kumar, Harvinder Singh, Manisha Prajapat, Phulen Sarma, Anusuya Bhattacharyya, Hardeep Kaur, Gurjeet Kaur, Nishant Shekhar, Karanveer Kaushal, Kalpna Kumari, Seema Bansal, Saniya Mahendiratta, Arushi Chauhan, Ashutosh Singh, Rahul Soloman Singh, Saurabh Sharma, Prasad Thota, Pramod Avti, Ajay Prakash, Anurag Kuhad & Bikash Medhi. (2023) Structural-Based Virtual Screening of FDA-Approved Drugs Repository for NSP16 Inhibitors, Essential for SARS-COV-2 Invasion Into Host Cells: Elucidation From MM/PBSA Calculation. Bioinformatics and Biology Insights 17.
Crossref
Raymond C. Ibeh, Gavin C. Ikechukwu, Chinonyerem J. Ukweni, Israel C. Omekara, Amanda U. Ezirim, Favour N. Ujowundu, Ebere O. Eziefuna, Callistus I. Iheme, Sunday O. Oyedemi, Hezekiel M. Kumalo, Umar Ndagi & Monsurat M. Lawal. (2023) Computational studies of potential antiviral compounds from some selected Nigerian medicinal plants against SARS-CoV-2 proteins. Informatics in Medicine Unlocked 38, pages 101230.
Crossref
B. Manimekalai, R. Arulmozhi, Mariselvam Ammasi Krishnan & S. Sivanesan. (2022) Consequence of COVID ‐19 occurrences in wastewater with promising recognition and healing technologies: A review . Environmental Progress & Sustainable Energy 42:1.
Crossref
Kansate Prasertsuk, Kasidit Prongfa, Piyapach Suttiwanich, Nathaphat Harnkit, Mattanun Sangkhawasi, Pongsakorn Promta & Pramote Chumnanpuen. (2022) Computer-Aided Screening for Potential Coronavirus 3-Chymotrypsin-like Protease (3CLpro) Inhibitory Peptides from Putative Hemp Seed Trypsinized Peptidome. Molecules 28:1, pages 50.
Crossref
Jialin Wu, Zhe Liu, Xiaofeng Yang & Zhanglin Lin. (2022) Improved compound–protein interaction site and binding affinity prediction using self-supervised protein embeddings. BMC Bioinformatics 23:1.
Crossref
Anastasia S. Tsingotjidou. (2022) Oxytocin: A Multi-Functional Biomolecule with Potential Actions in Dysfunctional Conditions; From Animal Studies and Beyond. Biomolecules 12:11, pages 1603.
Crossref
Lin Wang, Zheyi Wang, Zhihua Yang, Xingwang Wang, Liping Yan, Jianxiong Wu, Yue Liu, Baohui Fu & Hongtao Yang. (2022) Potential common mechanism of four Chinese patent medicines recommended by diagnosis and treatment protocol for COVID-19 in medical observation period. Frontiers in Medicine 9.
Crossref
E. Balatti, Galo, G. Barletta, Patricio, D. Perez, Andres, L. Giudicessi, Silvana & C. Martínez‐Ceron, María. 2022. Drug Design Using Machine Learning. Drug Design Using Machine Learning 21 96 .
Venkataraghavan Ragunathan, Thiruchelvi Ramakrishnan & Rajnish Narayanan. (2022) Individual and Synergistic Potential of Bioactive Compounds from Chrysopogon Zizanioides Against Main-Protease of SARSCov-2 using Computational Approach. Biosciences Biotechnology Research Asia 19:3, pages 657-670.
Crossref
Abdul Manan, Rameez Hassan Pirzada, Muhammad Haseeb & Sangdun Choi. (2022) Toll-like Receptor Mediation in SARS-CoV-2: A Therapeutic Approach. International Journal of Molecular Sciences 23:18, pages 10716.
Crossref
Abolfazl Mirzadeh, George Kobakhidze, Rémi Vuillemot, Slavica Jonic & Isabelle Rouiller. (2022) In silico prediction, characterization, docking studies and molecular dynamics simulation of human p97 in complex with p37 cofactor. BMC Molecular and Cell Biology 23:1.
Crossref
Paul Andrei Negru, Denisa Claudia Miculas, Tapan Behl, Alexa Florina Bungau, Ruxandra-Cristina Marin & Simona Gabriela Bungau. (2022) Virtual screening of substances used in the treatment of SARS-CoV-2 infection and analysis of compounds with known action on structurally similar proteins from other viruses. Biomedicine & Pharmacotherapy 153, pages 113432.
Crossref
Kaifu Gao, Rui Wang, Jiahui Chen, Limei Cheng, Jaclyn Frishcosy, Yuta Huzumi, Yuchi Qiu, Tom Schluckbier, Xiaoqi Wei & Guo-Wei Wei. (2022) Methodology-Centered Review of Molecular Modeling, Simulation, and Prediction of SARS-CoV-2. Chemical Reviews 122:13, pages 11287-11368.
Crossref
Winston Chiu, Lore Verschueren, Christel  Van den Eynde, Christophe Buyck, Sandra De Meyer, Dirk Jochmans, Denisa Bojkova, Sandra Ciesek, Jindrich Cinatl, Steven De Jonghe, Pieter Leyssen, Johan Neyts, Marnix Van Loock & Ellen Van Damme. (2022) Development and optimization of a high‐throughput screening assay for in vitro anti‐SARS‐CoV‐2 activity: Evaluation of 5676 Phase 1 Passed Structures. Journal of Medical Virology 94:7, pages 3101-3111.
Crossref
Mohamed Fadlalla, Mazin Ahmed, Musab Ali, Abdulrhman A. Elshiekh & Bashir A. Yousef. (2022) Molecular Docking as a Potential Approach in Repurposing Drugs Against COVID-19: a Systematic Review and Novel Pharmacophore Models. Current Pharmacology Reports 8:3, pages 212-226.
Crossref
Mohammad Khedri, Reza Maleki, Mohammad Dahri, Mohammad Moein Sadeghi, Sima Rezvantalab, Hélder A. Santos & Mohammad-Ali Shahbazi. (2021) Engineering of 2D nanomaterials to trap and kill SARS-CoV-2: a new insight from multi-microsecond atomistic simulations. Drug Delivery and Translational Research 12:6, pages 1408-1422.
Crossref
Manoj K. Kolel-Veetil, Aayush Kant, Vivek B. Shenoy & Markus J. Buehler. (2022) SARS-CoV-2 Infection−Of Music and Mechanics of Its Spikes ! A Perspective . ACS Nano 16:5, pages 6949-6955.
Crossref
Nicola Gambacorta, Leonardo Caputo, Laura Quintieri, Linda Monaci, Fulvio Ciriaco & Orazio Nicolotti. (2022) Rational Discovery of Antiviral Whey Protein-Derived Small Peptides Targeting the SARS-CoV-2 Main Protease. Biomedicines 10:5, pages 1067.
Crossref
Rahman Abdizadeh, Farzin Hadizadeh & Tooba Abdizadeh. (2021) In silico analysis and identification of antiviral coumarin derivatives against 3-chymotrypsin-like main protease of the novel coronavirus SARS-CoV-2. Molecular Diversity 26:2, pages 1053-1076.
Crossref
Undiganalu G. Yathisha, Mahendra Gowdru Srinivasa, Revana Siddappa BC, Subankar P Mandal, Sheshagiri R. Dixit, G. V. Pujar & Mamatha Bangera Sheshappa. (2021) Isolation and characterization of ACE‐I inhibitory peptides from ribbonfish for a potential inhibitor of the main protease of SARS‐CoV ‐2: An in silico analysis . Proteins: Structure, Function, and Bioinformatics 90:4, pages 982-992.
Crossref
Abhishek Kumar Verma, Aarfah Majid, Md. Shahadat Hossain, SK. Faisal Ahmed, Mohammad Ashid, Ali Asger Bhojiya, Sudhir K. Upadhyay, Naveen Kumar Vishvakarma & Mudassir Alam. (2022) Identification of 1, 2, 4-Triazine and Its Derivatives Against Lanosterol 14-Demethylase (CYP51) Property of Candida albicans: Influence on the Development of New Antifungal Therapeutic Strategies. Frontiers in Medical Technology 4.
Crossref
Ian W. Hamley. (2022) Peptides for Vaccine Development. ACS Applied Bio Materials 5:3, pages 905-944.
Crossref
Swati G. TaleleEknath D. AhireKhemchand R. SuranaVijayraj N. SonawaneGokul S. Talele. (2022) Corona Virus Disease (COVID-19): A past and Present Prospective. Asian Journal of Pharmaceutical Research, pages 45-53.
Crossref
Syed Ajaz K. Kirmani, Parvez Ali & Jawed Ahmad. (2022) Topological Coindices and Quantitative Structure-Property Analysis of Antiviral Drugs Investigated in the Treatment of COVID-19. Journal of Chemistry 2022, pages 1-15.
Crossref
Nilanjan Adhikari, Suvankar Banerjee, Sandip Kumar Baidya, Balaram Ghosh & Tarun Jha. (2022) Ligand-based quantitative structural assessments of SARS-CoV-2 3CLpro inhibitors: An analysis in light of structure-based multi-molecular modeling evidences. Journal of Molecular Structure 1251, pages 132041.
Crossref
Afsaneh Sadremomtaz, Zayana M. Al-Dahmani, Angel J. Ruiz-Moreno, Alessandra Monti, Chao Wang, Taha Azad, John C. Bell, Nunzianna Doti, Marco A. Velasco-Velázquez, Debora de Jong, Jørgen de Jonge, Jolanda Smit, Alexander Dömling, Harry van Goor & Matthew R. Groves. (2021) Synthetic Peptides That Antagonize the Angiotensin-Converting Enzyme-2 (ACE-2) Interaction with SARS-CoV-2 Receptor Binding Spike Protein. Journal of Medicinal Chemistry 65:4, pages 2836-2847.
Crossref
Bathula Siva Kumar, Singh Anuragh, Ananth Kumar Kammala & Kaliappan Ilango. (2022) Computer Aided Drug Design Approach to Screen Phytoconstituents of Adhatoda vasica as Potential Inhibitors of SARS-CoV-2 Main Protease Enzyme. Life 12:2, pages 315.
Crossref
Ranjit K. Harwansh & Shiv Bahadur. (2022) Herbal Medicines to Fight Against COVID-19: New Battle with an Old Weapon. Current Pharmaceutical Biotechnology 23:2, pages 235-260.
Crossref
Jebiti Haribabu, Vasavi Garisetti, Rahime Eshaghi Malekshah, Swaminathan Srividya, Dasararaju Gayathri, Nattamai Bhuvanesh, Ramalinga Viswanathan Mangalaraja, Cesar Echeverria & Ramasamy Karvembu. (2022) Design and synthesis of heterocyclic azole based bioactive compounds: Molecular structures, quantum simulation, and mechanistic studies through docking as multi-target inhibitors of SARS-CoV-2 and cytotoxicity. Journal of Molecular Structure 1250, pages 131782.
Crossref
Suwen Hu, Songwei Jiang, Xiang Qi, Renren Bai, Xiang‐Yang Ye & Tian Xie. (2021) Races of small molecule clinical trials for the treatment of COVID‐19: An up‐to‐date comprehensive review. Drug Development Research 83:1, pages 16-54.
Crossref
Mahmoud A. El Hassab, Loah R. Hemeda, Zainab M. Elsayed, Sara T. Al‐Rashood, Mohammed K. Abdel‐Hamid Amin, Hatem A. Abdel‐Aziz & Wagdy M. Eldehna. (2022) Computational Prediction of the Potential Target of SARS‐CoV‐2 Inhibitor Plitidepsin via Molecular Docking, Dynamic Simulations and MM‐PBSA Calculations. Chemistry & Biodiversity 19:2.
Crossref
Venkataraghavan Ragunathan, K. Chithra, C. Shivanika & Meenambiga Setti Sudharsan. (2022) Modelling and targeting mitochondrial protein tyrosine phosphatase 1: a computational approach. In Silico Pharmacology 10:1.
Crossref
Imran Sama-ae, Suthinee Sangkanu, Abolghasem Siyadatpanah, Roghayeh Norouzi, Julalak Chuprom, Watcharapong Mitsuwan, Sirirat Surinkaew, Rachasak Boonhok, Alok K. Paul, Tooba Mahboob, Najme Sadat Abtahi, Tajudeen O. Jimoh, Sónia M.R. Oliveira, Madhu Gupta, Chea Sin, Maria de Lourdes Pereira, Polrat Wilairatana, Christophe Wiart, Mohammed Rahmatullah, Karma G. Dolma & Veeranoot Nissapatorn. (2023) Targeting Acanthamoeba proteins interaction with flavonoids of Propolis extract by in vitro and in silico studies for promising therapeutic effects. F1000Research 11, pages 1274.
Crossref
Imran Sama-ae, Suthinee Sangkanu, Abolghasem Siyadatpanah, Roghayeh Norouzi, Julalak Chuprom, Watcharapong Mitsuwan, Sirirat Surinkaew, Rachasak Boonhok, Alok K. Paul, Tooba Mahboob, Najme Sadat Abtahi, Tajudeen O. Jimoh, Sónia M.R. Oliveira, Madhu Gupta, Chea Sin, Maria de Lourdes Pereira, Polrat Wilairatana, Christophe Wiart, Mohammed Rahmatullah, Karma G. Dolma & Veeranoot Nissapatorn. (2023) Targeting Acanthamoeba proteins interaction with flavonoids of Propolis extract by in vitro and in silico studies for promising therapeutic effects. F1000Research 11, pages 1274.
Crossref
Imran Sama-ae, Suthinee Sangkanu, Abolghasem Siyadatpanah, Roghayeh Norouzi, Julalak Chuprom, Watcharapong Mitsuwan, Sirirat Surinkaew, Rachasak Boonhok, Alok K. Paul, Tooba Mahboob, Najme Sadat Abtahi, Tajudeen O. Jimoh, Sónia M.R. Oliveira, Madhu Gupta, Chea Sin, Maria de Lourdes Pereira, Polrat Wilairatana, Christophe Wiart, Mohammed Rahmatullah, Karma G. Dolma & Veeranoot Nissapatorn. (2022) Targeting Acanthamoeba proteins interaction with flavonoids of Propolis extract by in vitro and in silico studies for promising therapeutic effects. F1000Research 11, pages 1274.
Crossref
Arun Bahadur Gurung, Mohammad Ajmal Ali, Joongku Lee, Mohammad Abul Farah, Khalid Mashay Al-Anazi & Hiba Sami. (2022) Molecular modelling studies unveil potential binding sites on human serum albumin for selected experimental and in silico COVID-19 drug candidate molecules. Saudi Journal of Biological Sciences 29:1, pages 53-64.
Crossref
Io Antonopoulou, Eleftheria Sapountzaki, Ulrika Rova & Paul Christakopoulos. (2022) Inhibition of the main protease of SARS-CoV-2 (Mpro) by repurposing/designing drug-like substances and utilizing nature’s toolbox of bioactive compounds. Computational and Structural Biotechnology Journal 20, pages 1306-1344.
Crossref
Lin Feng Ng & Mohd Yazid Yahya. 2022. Machine Learning Applied to Composite Materials. Machine Learning Applied to Composite Materials 115 134 .
Abhimanyu & Chakresh Kumar Jain. 2022. Phytochemical Genomics. Phytochemical Genomics 681 698 .
Shumin Ren & Bairong Shen. 2022. Translational Informatics. Translational Informatics 189 214 .
Ziyad Tariq Muhseen, Mustafa Hussein Ali, Nawar Rushdi Jaber, Dheyaa Shakir Mashrea, Ali Mamoon Alfalki & Guanglin Li. (2021) Determination of Novel Anti-Cancer Agents by Targeting OGG1 Enzyme Using Integrated Bioinformatics Methods. International Journal of Environmental Research and Public Health 18:24, pages 13290.
Crossref
Wei Yu, Xiaomin Wu, Yizhen Zhao, Chun Chen, Zhiwei Yang, Xiaochun Zhang, Jiayi Ren, Yueming Wang, Changwen Wu, Chengming Li, Rongfeng Chen, Xiaoli Wang, Weihong Zheng, Huaxin Liao & Xiaohui Yuan. (2021) Computational Simulation of HIV Protease Inhibitors to the Main Protease (Mpro) of SARS-CoV-2: Implications for COVID-19 Drugs Design. Molecules 26:23, pages 7385.
Crossref
Pedro M. Martins, Lucianna H. Santos, Diego Mariano, Felippe C. Queiroz, Luana L. Bastos, Isabela de S. Gomes, Pedro H. C. Fischer, Rafael E. O. Rocha, Sabrina A. Silveira, Leonardo H. F. de Lima, Mariana T. Q. de Magalhães, Maria G. A. Oliveira & Raquel C. de Melo-Minardi. (2021) Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm. BMC Bioinformatics 22:1.
Crossref
Ranjan K. Mohapatra, Kuldeep Dhama, Amr Ahmed El–Arabey, Ashish K. Sarangi, Ruchi Tiwari, Talha Bin Emran, Mohammad Azam, Saud I. Al-Resayes, Mukesh K. Raval, Veronique Seidel & Mohnad Abdalla. (2021) Repurposing benzimidazole and benzothiazole derivatives as potential inhibitors of SARS-CoV-2: DFT, QSAR, molecular docking, molecular dynamics simulation, and in-silico pharmacokinetic and toxicity studies. Journal of King Saud University - Science 33:8, pages 101637.
Crossref
Muzammil Khan, Muhammad Taqi Mehran, Zeeshan Ul Haq, Zahid Ullah, Salman Raza Naqvi, Mehreen Ihsan & Haider Abbass. (2021) Applications of artificial intelligence in COVID-19 pandemic: A comprehensive review. Expert Systems with Applications 185, pages 115695.
Crossref
Suyash Pant & N.R. Jena. (2021) Inhibition of the RNA-dependent RNA Polymerase of the SARS-CoV-2 by Short Peptide Inhibitors. European Journal of Pharmaceutical Sciences 167, pages 106012.
Crossref
Illya Aronskyy, Yosef Masoudi-Sobhanzadeh, Antonio Cappuccio & Elena Zaslavsky. (2021) Advances in the computational landscape for repurposed drugs against COVID-19. Drug Discovery Today 26:12, pages 2800-2815.
Crossref
Iqrar Ahmad, Rahul Pawara, Sanjay Surana & Harun Patel. (2021) The Repurposed ACE2 Inhibitors: SARS-CoV-2 Entry Blockers of Covid-19. Topics in Current Chemistry 379:6.
Crossref
Souvik Banerjee, Shalini Yadav, Sourav Banerjee, Sayo O. Fakayode, Jyothi Parvathareddy, Walter Reichard, Surekha Surendranathan, Foyez Mahmud, Ryan Whatcott, Joshua Thammathong, Bernd Meibohm, Duane D. Miller, Colleen B. Jonsson & Kshatresh Dutta Dubey. (2021) Drug Repurposing to Identify Nilotinib as a Potential SARS-CoV-2 Main Protease Inhibitor: Insights from a Computational and In Vitro Study . Journal of Chemical Information and Modeling 61:11, pages 5469-5483.
Crossref
Bharat Krushna Khuntia, Vandna Sharma, Sahar Qazi, Soumi Das, Shruti Sharma, Khalid Raza & Gautam Sharma. (2021) Ayurvedic Medicinal Plants Against COVID-19: An In Silico Analysis . Natural Product Communications 16:11, pages 1934578X2110567.
Crossref
Anuj Kumar, Dwijesh Chandra Mishra, Ulavappa Basavanneppa Angadi, Rashmi Yadav, Anil Rai & Dinesh Kumar. (2021) Inhibition Potencies of Phytochemicals Derived from Sesame Against SARS-CoV-2 Main Protease: A Molecular Docking and Simulation Study. Frontiers in Chemistry 9.
Crossref
Yuqi Zhang, Li Chen, Xiaoyu Wang, Yanyan Zhu, Yongsheng Liu, Huiyu Li & Qingjie Zhao. (2021) Interactive Mechanism of Potential Inhibitors with Glycosyl for SARS-CoV-2 by Molecular Dynamics Simulation. Processes 9:10, pages 1749.
Crossref
Katalin Szilágyi, Beáta Flachner, István Hajdú, Mária Szaszkó, Krisztina Dobi, Zsolt Lőrincz, Sándor Cseh & György Dormán. (2021) Rapid Identification of Potential Drug Candidates from Multi-Million Compounds’ Repositories. Combination of 2D Similarity Search with 3D Ligand/Structure Based Methods and In Vitro Screening. Molecules 26:18, pages 5593.
Crossref
Alejandro Heres, Fidel Toldrá & Leticia Mora. (2021) Characterization of Umami Dry-Cured Ham-Derived Dipeptide Interaction with Metabotropic Glutamate Receptor (mGluR) by Molecular Docking Simulation. Applied Sciences 11:17, pages 8268.
Crossref
Hazem Mslati, Francesco Gentile, Carl Perez & Artem Cherkasov. (2021) Comprehensive Consensus Analysis of SARS-CoV-2 Drug Repurposing Campaigns. Journal of Chemical Information and Modeling 61:8, pages 3771-3788.
Crossref
Olusola Olalekan Elekofehinti, Opeyemi Iwaloye, Olorunfemi R. Molehin & Courage D. Famusiwa. (2021) Identification of lead compounds from large natural product library targeting 3C-like protease of SARS-CoV-2 using E-pharmacophore modelling, QSAR and molecular dynamics simulation. In Silico Pharmacology 9:1.
Crossref
Bhaskarjyoti Gogoi, Purvita Chowdhury, Nabajyoti Goswami, Neelutpal Gogoi, Tufan Naiya, Pankaj Chetia, Saurov Mahanta, Dipak Chetia, Bhaben Tanti, Probodh Borah & Pratap Jyoti Handique. (2021) Identification of potential plant-based inhibitor against viral proteases of SARS-CoV-2 through molecular docking, MM-PBSA binding energy calculations and molecular dynamics simulation. Molecular Diversity 25:3, pages 1963-1977.
Crossref
M. Ramesh, Krishnan Anand, Mohd Shahbaaz & Magda H. Abdellattif. (2021) Current Perspectives in the Discovery of Newer Medications Against the Outbreak of COVID-19. Frontiers in Molecular Biosciences 8.
Crossref
Edmond Y. Lau, Oscar A. Negrete, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Derek Jones, Hyojin Kim, Daniel Kirshner, Victoria Lao, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Edwin A. Saada, Brent Segelke, Maxwell A. Stefan, Garrett A. Stevenson, Marisa W. Torres, Dina R. Weilhammer, Sergio Wong, Yue Yang, Adam Zemla, Xiaohua Zhang, Fangqiang Zhu, Jonathan E. Allen & Felice C. Lightstone. (2021) Discovery of Small-Molecule Inhibitors of SARS-CoV-2 Proteins Using a Computational and Experimental Pipeline. Frontiers in Molecular Biosciences 8.
Crossref
Aliye Gediz Erturk, Arzu Sahin, Ebru Bati Ay, Emel Pelit, Emine Bagdatli, Irem Kulu, Melek Gul, Seda Mesci, Serpil Eryilmaz, Sirin Oba Ilter & Tuba Yildirim. (2021) A Multidisciplinary Approach to Coronavirus Disease (COVID-19). Molecules 26:12, pages 3526.
Crossref
Chao Liu, Xiaoxiao Zhu, Yiyao Lu, Xianqin Zhang, Xu Jia & Tai Yang. (2021) Potential treatment with Chinese and Western medicine targeting NSP14 of SARS-CoV-2. Journal of Pharmaceutical Analysis 11:3, pages 272-277.
Crossref
Jiapan Gao, Yuanyuan Ding, Yuejin Wang, Peida Liang, Liyang Zhang & Rui Liu. (2021) Oroxylin A is a severe acute respiratory syndrome coronavirus 2‐spiked pseudotyped virus blocker obtained from Radix Scutellariae using angiotensin‐converting enzyme II /cell membrane chromatography . Phytotherapy Research 35:6, pages 3194-3204.
Crossref
Sameh S. Elhady, Reda F. A. Abdelhameed, Rania T. Malatani, Abdulrahman M. Alahdal, Hanin A. Bogari, Ahmad J. Almalki, Khadijah A. Mohammad, Safwat A. Ahmed, Amgad I. M. Khedr & Khaled M. Darwish. (2021) Molecular Docking and Dynamics Simulation Study of Hyrtios erectus Isolated Scalarane Sesterterpenes as Potential SARS-CoV-2 Dual Target Inhibitors. Biology 10:5, pages 389.
Crossref
Rohini S. Kharwade & Sachin M. More. (2021) Coordinated Roadmap to Grip Pandemic COVID-19. Coronaviruses 2:4, pages 468-480.
Crossref
Mateus S.M. Serafim, Jadson C. Gertrudes, Débora M.A. Costa, Patricia R. Oliveira, Vinicius G. Maltarollo & Kathia M. Honorio. (2021) Knowing and combating the enemy: a brief review on SARS-CoV-2 and computational approaches applied to the discovery of drug candidates. Bioscience Reports 41:3.
Crossref
Serena Dotolo, Anna Marabotti, Angelo Facchiano & Roberto Tagliaferri. (2021) A review on drug repurposing applicable to COVID-19. Briefings in Bioinformatics 22:2, pages 726-741.
Crossref
Nicholas Palmer, Jacqueline R. M. A. Maasch, Marcelo D. T. Torres & César de la Fuente-Nunez. (2021) Molecular Dynamics for Antimicrobial Peptide Discovery. Infection and Immunity 89:4.
Crossref
O. V. Tinkov, V. Yu. Grigorev & L. D. Grigoreva. (2021) Virtual Screening and Molecular Design of Potential SARS-COV-2 Inhibitors. Moscow University Chemistry Bulletin 76:2, pages 95-113.
Crossref
Sampark S. Thakkar, Foram Shelat & Parth Thakor. (2021) Magical bullets from an indigenous Indian medicinal plant Tinospora cordifolia: An in silico approach for the antidote of SARS-CoV-2. Egyptian Journal of Petroleum 30:1, pages 53-66.
Crossref
Shabbir Muhammad, Sayyeda Hira Hassan, Abdullah G. Al-Sehemi, Hafiz Abdullah Shakir, Muhammad Khan, Muhammad Irfan & Javed Iqbal. (2021) Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies. Chemical Physics Letters 767, pages 138379.
Crossref
Allison Bakovic, Kenneth Risner, Nishank Bhalla, Farhang Alem, Theresa L. Chang, Warren K. Weston, Jane A. Harness & Aarthi Narayanan. (2021) Brilacidin Demonstrates Inhibition of SARS-CoV-2 in Cell Culture. Viruses 13:2, pages 271.
Crossref
Hakan Parlakpinar, Seyhan Polat & Haci Ahmet Acet. (2020) Pharmacological agents under investigation in the treatment of coronavirus disease 2019 and the importance of melatonin. Fundamental & Clinical Pharmacology 35:1, pages 62-75.
Crossref
Maheswari Nagendran, Juliana John, Kavithakani Annamalai, Muthu Iswarya Gandhi Sethuraman, Nirkayani Balamurugan, Harish Kumar Rajendran, Mohammed Askkar Deen Fakrudeen, Ragavan Chandrasekar, Shivendu Ranjan & Velayudhaperumal Chellam Padmanaban. (2021) Can human overcome viral hijack-? Comprehensive review on COVID-19 in the view of diagnosis and mitigation across countries. Journal of Drug Delivery Science and Technology 61, pages 102120.
Crossref
Tofael Ahmed Sumon, Md. Ashraf Hussain, Md. Tawheed Hasan, Mahmudul Hasan, Won Je Jang, Eleus Hussain Bhuiya, Abdullah Al Mamun Chowdhury, S. M. Sharifuzzaman, Christopher Lyon Brown, Hyun-Ju Kwon & Eun-Woo Lee. (2021) A Revisit to the Research Updates of Drugs, Vaccines, and Bioinformatics Approaches in Combating COVID-19 Pandemic. Frontiers in Molecular Biosciences 7.
Crossref
Matteo Carli, Giulia Sormani, Alex Rodriguez & Alessandro Laio. (2020) Candidate Binding Sites for Allosteric Inhibition of the SARS-CoV-2 Main Protease from the Analysis of Large-Scale Molecular Dynamics Simulations. The Journal of Physical Chemistry Letters 12:1, pages 65-72.
Crossref
Kalyan Ghosh, Sk. Abdul Amin, Shovanlal Gayen & Tarun Jha. (2021) Chemical-informatics approach to COVID-19 drug discovery: Exploration of important fragments and data mining based prediction of some hits from natural origins as main protease (Mpro) inhibitors. Journal of Molecular Structure 1224, pages 129026.
Crossref
Sk. Abdul Amin, Suvankar Banerjee, Kalyan Ghosh, Shovanlal Gayen & Tarun Jha. (2021) Protease targeted COVID-19 drug discovery and its challenges: Insight into viral main protease (Mpro) and papain-like protease (PLpro) inhibitors. Bioorganic & Medicinal Chemistry 29, pages 115860.
Crossref
Amutha Ramaswamy, Sangeetha Balasubramanian & Muthukumaran Rajagopalan. 2021. Molecular Docking for Computer-Aided Drug Design. Molecular Docking for Computer-Aided Drug Design 245 269 .
Xueqing Wang & Yuanfang Guan. (2020) COVID‐19 drug repurposing: A review of computational screening methods, clinical trials, and protein interaction assays. Medicinal Research Reviews 41:1, pages 5-28.
Crossref
Zijing Ruan, Chao Liu, Yuting Guo, Zhenqing He, Xinhe Huang, Xu Jia & Tai Yang. (2020) SARS‐CoV‐2 and SARS‐CoV: Virtual screening of potential inhibitors targeting RNA‐dependent RNA polymerase activity (NSP12). Journal of Medical Virology 93:1, pages 389-400.
Crossref
Jingxiao Bao, Xiao He & John Z.H. Zhang. (2020) Development of a New Scoring Function for Virtual Screening: APBScore. Journal of Chemical Information and Modeling 60:12, pages 6355-6365.
Crossref
Leping Deng, Weihe Zhong, Lu Zhao, Xuedong He, Zongkai Lian, Shancheng Jiang & Calvin Yu-Chian Chen. (2020) Artificial Intelligence-Based Application to Explore Inhibitors of Neurodegenerative Diseases. Frontiers in Neurorobotics 14.
Crossref
Stanislav R. Kurpe, Sergei Yu. Grishin, Alexey K. Surin, Alexander V. Panfilov, Mikhail V. Slizen, Saikat D. Chowdhury & Oxana V. Galzitskaya. (2020) Antimicrobial and Amyloidogenic Activity of Peptides. Can Antimicrobial Peptides Be Used against SARS-CoV-2?. International Journal of Molecular Sciences 21:24, pages 9552.
Crossref
Juhi Chakraborty, Indranil Banerjee, Raju Vaishya & Sourabh Ghosh. (2020) Bioengineered in Vitro Tissue Models to Study SARS-CoV-2 Pathogenesis and Therapeutic Validation . ACS Biomaterials Science & Engineering 6:12, pages 6540-6555.
Crossref
Jacob Balma, Aaron D. Vose, Yuri K. Peterson, Amar G. Chittiboyina, Pankaj Pandey, Charles R. Yates, Ikhlas A. Khan & Sreenivas R. Sukumar. (2020) Deep Learning Predicts Protein-Ligand Interactions. Deep Learning Predicts Protein-Ligand Interactions.
Mohamed Mahdi, János András Mótyán, Zsófia Ilona Szojka, Mária Golda, Márió Miczi & József Tőzsér. (2020) Analysis of the efficacy of HIV protease inhibitors against SARS-CoV-2′s main protease. Virology Journal 17:1.
Crossref
Phuoc-Tan Diep, Khojasta Talash & Violet Kasabri. (2020) Hypothesis: Oxytocin is a direct COVID-19 antiviral. Medical Hypotheses 145, pages 110329.
Crossref
Eleni Pitsillou, Julia Liang, Chris Karagiannis, Katherine Ververis, Kevion K. Darmawan, Ken Ng, Andrew Hung & Tom C. Karagiannis. (2020) Interaction of small molecules with the SARS-CoV-2 main protease in silico and in vitro validation of potential lead compounds using an enzyme-linked immunosorbent assay. Computational Biology and Chemistry 89, pages 107408.
Crossref
Sinara Mônica Vitalino de Almeida, José Cleberson Santos Soares, Keriolaine Lima dos Santos, Josival Emanuel Ferreira Alves, Amélia Galdino Ribeiro, Íris Trindade Tenório Jacob, Cindy Juliane da Silva Ferreira, Jéssica Celerino dos Santos, Jamerson Ferreira de Oliveira, Luiz Bezerra de Carvalho Junior & Maria do Carmo Alves de Lima. (2020) COVID-19 therapy: What weapons do we bring into battle?. Bioorganic & Medicinal Chemistry 28:23, pages 115757.
Crossref
Mousmee Sharma, Parteek Prasher, Meenu Mehta, Flavia C. Zacconi, Yogendra Singh, Deepak N. Kapoor, Harish Dureja, Dinesh M. Pardhi, Murtaza M. Tambuwala, Gaurav Gupta, Dinesh K. Chellappan, Kamal Dua & Saurabh Satija. (2020) Probing 3CL protease: Rationally designed chemical moieties for COVID ‐19 . Drug Development Research 81:8, pages 911-918.
Crossref
Mohammad Rizki Fadhil Pratama, Hadi Poerwono & Siswandono Siswodihardjo. (2020) Molecular Docking of Novel 5-O-benzoylpinostrobin Derivatives as SARS-CoV-2 Main Protease Inhibitors . Pharmaceutical Sciences 26:Covid-19, pages S63-S77.
Crossref
Hariprasad Puttaswamy, Hittanahallikoppal Gajendramurthy Gowtham, Monu Dinesh Ojha, Ajay Yadav, Gourav Choudhir, Vasantharaja Raguraman, Bhani Kongkham, Koushalya Selvaraju, Shazia Shareef, Priyanka Gehlot, Faiz Ahamed & Leena Chauhan. (2020) In silico studies evidenced the role of structurally diverse plant secondary metabolites in reducing SARS-CoV-2 pathogenesis. Scientific Reports 10:1.
Crossref
Camilo Zamora-Ledezma, David F. Clavijo C.Ernesto Medina, Federico Sinche, Nelson Santiago Vispo, Si Amar Dahoumane & Frank Alexis. (2020) Biomedical Science to Tackle the COVID-19 Pandemic: Current Status and Future Perspectives. Molecules 25:20, pages 4620.
Crossref
Daniel Chakhalian, Robert B. Shultz, Catherine E. Miles & Joachim Kohn. (2020) Opportunities for biomaterials to address the challenges of COVID ‐19 . Journal of Biomedical Materials Research Part A 108:10, pages 1974-1990.
Crossref
Yenny Yolanda Lozano Jiménez, Ruth Mélida Sánchez Mora & Sara Emilia Giraldo Quintero. (2020) Potenciales estrategias terapéuticas basadas en péptidos para mitigar la infección por SARS-CoV-2. Nova 18:35, pages 61-66.
Crossref
Emmanuel Kweinor Tetteh, Mark Opoku Amankwa, Edward Kwaku Armah & Sudesh Rathilal. (2020) Fate of COVID-19 Occurrences in Wastewater Systems: Emerging Detection and Treatment Technologies—A Review. Water 12:10, pages 2680.
Crossref
Leonardo Evaristo de Sousa, Pedro Henrique de Oliveira Neto & Demetrio Antônio da Silva Filho. (2020) Kinetic Monte Carlo model for the COVID-19 epidemic: Impact of mobility restriction on a COVID-19 outbreak. Physical Review E 102:3.
Crossref
Mirza S. Baig, Manikandan Alagumuthu, Sajjan Rajpoot & Uzma Saqib. (2020) Identification of a Potential Peptide Inhibitor of SARS-CoV-2 Targeting its Entry into the Host Cells. Drugs in R&D 20:3, pages 161-169.
Crossref
Elena Cabezón & Ignacio Arechaga. (2020) Drug Weaponry to Fight Against SARS-CoV-2. Frontiers in Molecular Biosciences 7.
Crossref

Displaying 200 of 207 citing articles. Use the download link below to view the full list of citing articles.

Download full citations list

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.