Journal of Biomolecular Structure and Dynamics, Volume 31, Issue sup1 (2013)

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Journal of Biomolecular Structure and Dynamics, Volume 31, Issue sup1 (2013)

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Book of Abstracts. Albany 2013: The 18th Conversation

Abstract

Abstract
1 New biology from ancient enzymes
Paul Schimmel
Page: 1
Published online: 29 May 2013
Abstractfor1 New biology from ancient enzymes | References | PDF (96.1 KB)
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Abstract
2 A prebiotic RNA apparatus functions within the contemporary ribosome
Miri Krupkin, Ella Zimmerman, Anat Bashan & Ada Yonath
Page: 1
Published online: 29 May 2013
Abstractfor2 A prebiotic RNA apparatus functions within the contemporary ribosome | References | PDF (96.1 KB)
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Abstract
3 Origins and evolution of the translation machinery
George E. Fox, Quyen Tran, Mario Rivas & Victor Stepanov
Page: 2
Published online: 29 May 2013
Abstractfor3 Origins and evolution of the translation machinery | Full Text | References | PDF (85.6 KB)
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Abstract
4 Towards non-enzymatic RNA replication
Jack W. Szostak
Pages: 2-3
Published online: 29 May 2013
Abstractfor4 Towards non-enzymatic RNA replication | Full Text | References | PDF (95.4 KB)
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Abstract
5 Efficient and high-fidelity copying of an RNA-like model prebiotic system
Shenglong Zhang, Sergei M. Gryaznov & Jack W. Szostak
Page: 3
Published online: 29 May 2013
Abstractfor5 Efficient and high-fidelity copying of an RNA-like model prebiotic system | References | PDF (50.9 KB)
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Abstract
6 Crystal structure studies of RNA molecules containing 2′–5′-linkages
Jia Sheng, Li Li, Aaron E. Engelhart & Jack W. Szostak
Page: 4
Published online: 29 May 2013
Abstractfor6 Crystal structure studies of RNA molecules containing 2′–5′-linkages | PDF (92.2 KB)
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Abstract
7 Imperfect RNA synthesis via model prebiotic reactions and consequences for functional RNAs
Aaron E. Engelhart, Matthew W. Powner & Jack W. Szostak
Pages: 4-5
Published online: 29 May 2013
Abstractfor7 Imperfect RNA synthesis via model prebiotic reactions and consequences for functional RNAs | References | PDF (104.3 KB)
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Abstract
8 Using pseudorotation as a reaction coordinate in free energy simulations of nucleic acids
Li Li & Jack W. Szostak
Page: 5
Published online: 29 May 2013
Abstractfor8 Using pseudorotation as a reaction coordinate in free energy simulations of nucleic acids | Full Text | References | PDF (51.1 KB)
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Abstract
9 Prebiotic RNA synthesis: significance of mineral salts in montmorillonite-catalyzed reactions
Prakash C. Joshi, Michael F. Aldersley & James P. Ferris
Pages: 5-6
Published online: 29 May 2013
Abstractfor9 Prebiotic RNA synthesis: significance of mineral salts in montmorillonite-catalyzed reactions | Full Text | References | PDF (67.9 KB)
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Abstract
10 The montmorillonite-catalyzed synthesis of RNA dimer
Michael F. Aldersley, Prakash C. Joshi & James P. Ferris
Page: 6
Published online: 29 May 2013
Abstractfor10 The montmorillonite-catalyzed synthesis of RNA dimer | Full Text | References | PDF (57.4 KB)
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Abstract
11 Findings and hurdles on the path leading from formamide to the spontaneous generation of RNA
Samanta Pino, Raffaele Saladino, Giorgia Botta, Giovanna Costanzo & Ernesto Di Mauro
Pages: 6-7
Published online: 29 May 2013
Abstractfor11 Findings and hurdles on the path leading from formamide to the spontaneous generation of RNA | References | PDF (128.2 KB)
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Abstract
12 Reconstructing the RNA world
James Attwater, Aniela Wochner & Philipp Holliger
Page: 7
Published online: 29 May 2013
Abstractfor12 Reconstructing the RNA world | Full Text | References | PDF (109.3 KB)
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Abstract
13 RNA fitness landscapes
Irene A. Chen
Page: 8
Published online: 29 May 2013
Abstractfor13 RNA fitness landscapes | PDF (49.8 KB)
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Abstract
14 What RNA world ?? Ancestral polypeptides likely participated in the origins of translation
Charles W. Carter Jr., Li Li, S. Niranj Chandrasekaran, Katiria Gonzales Rivera & Martha L. Collier
Page: 8
Published online: 29 May 2013
Abstractfor14 What RNA world ?? Ancestral polypeptides likely participated in the origins of translation | Full Text | References | PDF (49.8 KB)
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Abstract
15 Combinatorial chemistry in the prebiotic environment
David Deamer
Page: 9
Published online: 29 May 2013
Abstractfor15 Combinatorial chemistry in the prebiotic environment | PDF (48.3 KB)
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Abstract
16 Mechanical energy, protein motion, and the possible origin of life between mica sheets
Helen Greenwood Hansma
Page: 9
Published online: 29 May 2013
Abstractfor16 Mechanical energy, protein motion, and the possible origin of life between mica sheets | References | PDF (48.3 KB)
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Abstract
17 Origin of life by metabolic avalanche breakthrough in an iron–sulfur world
Günter Wächtershäuser
Pages: 9-10
Published online: 29 May 2013
Abstractfor17 Origin of life by metabolic avalanche breakthrough in an iron–sulfur world | References | PDF (59.2 KB)
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Abstract
18 Possible extraterrestrial life: a quantum-chemical look on the silicon analogs of carbon biomolecules
Maxim S. Kondratyev, Artem V. Kabanov, Alexander A. Samchenko, Vladislav M. Komarov & Nikolay N. Khechinashvili
Pages: 10-11
Published online: 29 May 2013
Abstractfor18 Possible extraterrestrial life: a quantum-chemical look on the silicon analogs of carbon biomolecules | Full Text | References | PDF (61.5 KB)
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Abstract
19 Quantum chemical studies on the formamide-based origin of life
Judit E. Šponer, Arnošt Mládek, Martin Ferus, Svatopluk Civiš & Jiří Šponer
Pages: 11-12
Published online: 29 May 2013
Abstractfor19 Quantum chemical studies on the formamide-based origin of life | References | PDF (84.7 KB)
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Abstract
20 Supramolecular polymerization of nucleobase-like monomers in water
Isaac Gállego, Brian J. Cafferty, Michael C. Chen, Katherine I. Farley, Ramon Eritja & Nicholas V. Hud
Page: 12
Published online: 29 May 2013
Abstractfor20 Supramolecular polymerization of nucleobase-like monomers in water | Full Text | References | PDF (72.3 KB)
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Abstract
21 Ribosomal evidence suggests that archaea evolved after fungi
William L. Duax, David Dziak & Jordan Tick
Page: 13
Published online: 29 May 2013
Abstractfor21 Ribosomal evidence suggests that archaea evolved after fungi | PDF (76.6 KB)
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Abstract
22 Text segmentation approach reveals simple repeat “fossils” in genomic sequences
Zakharia M. Frenkel & Edward N. Trifonov
Pages: 13-14
Published online: 29 May 2013
Abstractfor22 Text segmentation approach reveals simple repeat “fossils” in genomic sequences | References | PDF (147.7 KB)
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Abstract
23 The phylogenomic roots of modern biochemistry, translation, and the genetic code
Gustavo Caetano-Anollés
Page: 14
Published online: 29 May 2013
Abstractfor23 The phylogenomic roots of modern biochemistry, translation, and the genetic code | References | PDF (111 KB)
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Abstract
24 Evolutionary dynamics of inteins in bacteria
Olga Novikova, Samantha Merwin, Natalya Topilina & Marlene Belfort
Page: 15
Published online: 29 May 2013
Abstractfor24 Evolutionary dynamics of inteins in bacteria | Full Text | References | PDF (70.1 KB)
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Abstract
25 Why no group II introns in nuclear genomes? translational repression, RNA-RNA interactions and mis-compartmentalization of mRNAs
Guosheng Qu, Xiaolong Dong, Venkata R. Chalamcharla, Sheila Lutz M. Joan Curcio & Marlene Belfort
Pages: 15-16
Published online: 29 May 2013
Abstractfor25 Why no group II introns in nuclear genomes? translational repression, RNA-RNA interactions and mis-compartmentalization of mRNAs | Full Text | References | PDF (79.5 KB)
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Abstract
26 Inversion approach to the origin of life: theoretical notions and experimental data
Vladimir N. Kompanichenko
Page: 16
Published online: 29 May 2013
Abstractfor26 Inversion approach to the origin of life: theoretical notions and experimental data | Full Text | References | PDF (49 KB)
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Abstract
27 Structural analyses by NMR reveal insights into the enzymatic mechanism of tRNA t6A modification biosynthesis
Kimberly A. Harris, Benjamin G. Bobay, Yann Bilbille & Paul F. Agris
Page: 17
Published online: 29 May 2013
Abstractfor27 Structural analyses by NMR reveal insights into the enzymatic mechanism of tRNA t6A modification biosynthesis | Full Text | PDF (51.6 KB)
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Abstract
28 The study of tRNA modifications by molecular dynamics
Xiaoju Zhang, Ross Walker & David H. Mathews
Page: 17
Published online: 29 May 2013
Abstractfor28 The study of tRNA modifications by molecular dynamics | PDF (51.6 KB)
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Abstract
29 Accelerating nucleic acid design using pre-selected sequences
Stanislav Bellaousov & David H. Mathews
Page: 18
Published online: 29 May 2013
Abstractfor29 Accelerating nucleic acid design using pre-selected sequences | PDF (90 KB)
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Abstract
39 Simulation of RNA tandem GA base pairs provides insights about the forces behind conformational preference
David H. Mathews & Asaminew H. Aytenfisu
Page: 18
Published online: 29 May 2013
Abstractfor39 Simulation of RNA tandem GA base pairs provides insights about the forces behind conformational preference | References | PDF (90 KB)
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Abstract
31 Discovery of novel ncRNA by scanning multiple genome alignments
Yinghan Fu, Zhenjiang Xu, Zhi J. Lu, Shan Zhao & David H. Mathews
Page: 19
Published online: 29 May 2013
Abstractfor31 Discovery of novel ncRNA by scanning multiple genome alignments | Full Text | References | PDF (54.1 KB)
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Abstract
32 High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Yaser Hashem, Amedee desGeorges, Jie Fu, Sarah N. Buss, Fabrice Jossinet, Amy Jobe, Qin Zhang, Hstau Y. Liao, Robert A. Grassucci, Chandrajit Bajaj, Eric Westhof, Susan Madison-Antenucci & Joachim Frank
Pages: 19-20
Published online: 29 May 2013
Abstractfor32 High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome | References | PDF (131 KB)
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Abstract
33 High-resolution cryo-EM structure of the Trypanosoma brucei 80S: a unique eukaryotic ribosome
Amy Jobe, Yaser Hashem, Amedee des Georges, Jie Fu, Sarah N. Buss, Fabrice Jossinet, Qin Zhang, Hstau Y. Liao, Bob Grassucci, Chandrajit Bajaj, Susan Madison-Antenucci, Eric Westhof & Joachim Frank
Page: 20
Published online: 29 May 2013
Abstractfor33 High-resolution cryo-EM structure of the Trypanosoma brucei 80S: a unique eukaryotic ribosome | PDF (119.4 KB)
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Abstract
34 Cyo-EM visualization of Mycobacterium 70S ribosome reveals unique structural components at the function sites
Jayati Sengupta & Manidip Shasmal
Page: 21
Published online: 29 May 2013
Abstractfor34 Cyo-EM visualization of Mycobacterium 70S ribosome reveals unique structural components at the function sites | Full Text | References | PDF (70.8 KB)
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Abstract
35 The energy landscapes of ribosome function
Jeffrey K. Noel, Karissa Y. Sanbonmatsu & Paul C. Whitford
Pages: 21-22
Published online: 29 May 2013
Abstractfor35 The energy landscapes of ribosome function | PDF (81.8 KB)
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Abstract
36 Identification and characterization of small subunit ribosomal intermediates
Neha Gupta, Keith Connolly & Gloria M. Culver
Page: 22
Published online: 29 May 2013
Abstractfor36 Identification and characterization of small subunit ribosomal intermediates | Full Text | PDF (51.7 KB)
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Abstract
37 A comparative study of ribosomal proteins: linkage between amino acid distribution and ribosomal assembly
Brittany Burton Lott, Takuya Nakazato & Yongmei Wang
Pages: 22-23
Published online: 29 May 2013
Abstractfor37 A comparative study of ribosomal proteins: linkage between amino acid distribution and ribosomal assembly | References | PDF (91.1 KB)
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Abstract
38 A network of interactions within the supraspliceosome
Joseph Sperling & Ruth Sperling
Page: 23
Published online: 29 May 2013
Abstractfor38 A network of interactions within the supraspliceosome | Full Text | References | PDF (79.8 KB)
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Abstract
39 In-silico study of the arrangement of the snRNPs within the native spliceosome
Ziv Frankenstein, Joseph Sperling, Ruth Sperling & Miriam Eisenstein
Page: 24
Published online: 29 May 2013
Abstractfor39 In-silico study of the arrangement of the snRNPs within the native spliceosome | Full Text | References | PDF (80.3 KB)
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Abstract
40 Probing single molecule RNA folding using temperature and force
William Stephenson, Rachel Santiago, Sean Keller, Scott Tenenbaum, Michael Zuker & Pan T.X. Li
Pages: 24-25
Published online: 29 May 2013
Abstractfor40 Probing single molecule RNA folding using temperature and force | PDF (91.2 KB)
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Abstract
41 The essential adenosine stacking in a two-base-pair minimal kissing complex
William Stephenson, Papa Nii Asare-Okai, Alan A. Chen, Scott Tenenbaum, Angel E. Garcia, Daniele Fabris & Pan T.X. Li
Page: 25
Published online: 29 May 2013
Abstractfor41 The essential adenosine stacking in a two-base-pair minimal kissing complex | PDF (52.1 KB)
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Abstract
42 Computer folding of RNA tetraloops? Are we there yet?
Petra Kührová, Pavel Banáš, Robert B. Best, Jiří Šponer & Michal Otyepka
Pages: 25-26
Published online: 29 May 2013
Abstractfor42 Computer folding of RNA tetraloops? Are we there yet? | Full Text | References | PDF (87.8 KB)
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Abstracts

Abstract
43 Why G? Aggregation and gelation of GMP with XMP: the plot thickens
Linda B. McGown, Lauren Cassidy & Akshar Gupta
Pages: 26-27
Published online: 29 May 2013
Abstractfor43 Why G? Aggregation and gelation of GMP with XMP: the plot thickens | Full Text | PDF (86.9 KB)
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Abstract

Abstract
44 Circular dichroism (CD) studies of the interaction between G-quadrulexes/I-motif with saffron secondary active metabolites
S. Zahra Bathaie, Reyhane Hoshyar & Nasim Shahhamzeie
Page: 27
Published online: 29 May 2013
Abstractfor44 Circular dichroism (CD) studies of the interaction between G-quadrulexes/I-motif with saffron secondary active metabolites | References | PDF (50.6 KB)
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Abstract
45 Electrochemical investigation of the interaction between G-quadruplex and some ligands using MWCNT modified carbon paste electrode
S. Malelahi, S. Zahra Bathaie, M.F. Mousavi & H. Ilkhani
Pages: 27-28
Published online: 29 May 2013
Abstractfor45 Electrochemical investigation of the interaction between G-quadruplex and some ligands using MWCNT modified carbon paste electrode | References | PDF (62.3 KB)
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Abstract
46 Effect of guanine substitutions in human telomeric G3(T2AG3)3 DNA sequence
Martin Tomaško, Michaela Vorlíčková, Miroslav Fojta & Janos Sagi
Page: 28
Published online: 29 May 2013
Abstractfor46 Effect of guanine substitutions in human telomeric G3(T2AG3)3 DNA sequence | Full Text | References | PDF (52.5 KB)
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Abstract
47 Incorporation of alternative nucleic acid chemistries into G-quadruplex structure
Christopher J. Lech & Anh Tuan Phan
Page: 29
Published online: 29 May 2013
Abstractfor47 Incorporation of alternative nucleic acid chemistries into G-quadruplex structure | References | PDF (52.5 KB)
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Abstract
48 NMR study of the interaction between G-quadruplexes and small molecules
Wan Jun Chung, Brahim Heddi & Anh Tuân Phan
Page: 29
Published online: 29 May 2013
Abstractfor48 NMR study of the interaction between G-quadruplexes and small molecules | PDF (52.5 KB)
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Abstract
49 Nucleic acids in anhydrous media: G-quadruplex folding governed by Kramers rate theory
Irena Mamajanov, Ford M. Lannan & Nicholas V. Hud
Pages: 29-30
Published online: 29 May 2013
Abstractfor49 Nucleic acids in anhydrous media: G-quadruplex folding governed by Kramers rate theory | Full Text | PDF (121.9 KB)
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Abstract
50 Single-molecule studies of human telomeric G-quadruplexes and the effect of oxidative damage
Aaron M. Fleming, Na An & Cynthia J. Burrows
Pages: 30-31
Published online: 29 May 2013
Abstractfor50 Single-molecule studies of human telomeric G-quadruplexes and the effect of oxidative damage | References | PDF (119.3 KB)
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Abstract
51 Platinum(II) phenanthroimidazoles with “clicked” side chains as selective G-quadruplex DNA binders
Katherine J. Castor, Johans Akhoury, Zhaomin Liu, Mark Hancock, Anthony Mittermaier, Nicolas Moitessier & Hanadi F. Sleiman
Pages: 31-32
Published online: 29 May 2013
Abstractfor51 Platinum(II) phenanthroimidazoles with “clicked” side chains as selective G-quadruplex DNA binders | References | PDF (51.8 KB)
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Abstract
52 Examining the effects of 2′-OH substitutions on the structure and stability of the S. cerevisiae telomerase RNA pseudoknot and tertiary structure
Carla A. Theimer, Fei Liu & Katelyn M. Jasper
Page: 32
Published online: 29 May 2013
Abstractfor52 Examining the effects of 2′-OH substitutions on the structure and stability of the S. cerevisiae telomerase RNA pseudoknot and tertiary structure | References | PDF (88.1 KB)
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Abstract
53 2D to 3D: interaction frequency maps to chromatin higher-order folded conformations
Dario Meluzzi & Gaurav Arya
Page: 33
Published online: 29 May 2013
Abstractfor53 2D to 3D: interaction frequency maps to chromatin higher-order folded conformations | Full Text | References | PDF (69.8 KB)
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Abstract
54 DNA conformation and energy in nucleosome core: a theoretical approach
Davood Norouzi
Pages: 33-34
Published online: 29 May 2013
Abstractfor54 DNA conformation and energy in nucleosome core: a theoretical approach | References | PDF (171.3 KB)
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Abstract
55 Dynamics of the nucleosome core particle revealed from a new database of high resolution X-ray crystallographic and simulated structures
Gautam Singh, Andrew V. Colasanti, Nicolas Clauvelin & Wilma K. Olson
Pages: 34-35
Published online: 29 May 2013
Abstractfor55 Dynamics of the nucleosome core particle revealed from a new database of high resolution X-ray crystallographic and simulated structures | PDF (186.1 KB)
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Abstract
56 Large-scale alternation of nucleosome positioning potential in pericentromeric chromosome regions
Viya B. Fedoseyeva & Alexander A. Alexandrov
Page: 35
Published online: 29 May 2013
Abstractfor56 Large-scale alternation of nucleosome positioning potential in pericentromeric chromosome regions | References | PDF (84.7 KB)
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Abstract
57 Nucleosome [mis]positioning, chromatin folding, and a computational karyotype
Victoria Bamburg, William Johnston, James Liman, James Solow & Thomas C. Bishop
Pages: 35-36
Published online: 29 May 2013
Abstractfor57 Nucleosome [mis]positioning, chromatin folding, and a computational karyotype | Full Text | References | PDF (123.3 KB)
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Abstract
58 Packaging trinucleotide repeats: the effect of CAG/CTG repeats on nucleosome formation
Vilma Medrano & Sarah Delaney
Page: 36
Published online: 29 May 2013
Abstractfor58 Packaging trinucleotide repeats: the effect of CAG/CTG repeats on nucleosome formation | Full Text | References | PDF (78.9 KB)
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Abstract
59 The synergy between DNA and nucleosomes in chromatin
Nicolas Clauvelin & Wilma K. Olson
Pages: 36-37
Published online: 29 May 2013
Abstractfor59 The synergy between DNA and nucleosomes in chromatin | Full Text | References | PDF (120.3 KB)
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Abstract
60 Binding and transactivation by the tumor suppression protein p53 are encoded in the differential structural properties of its response elements
Tali E. Haran, Alon Senitzki, Jenia Sharav, Itai Beno, Karin Rosenthal, Jennifer J. Jordan, Daniel Menendez & Michael A. Resnick
Pages: 37-38
Published online: 29 May 2013
Abstractfor60 Binding and transactivation by the tumor suppression protein p53 are encoded in the differential structural properties of its response elements | References | PDF (90.5 KB)
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Abstract
61 High-resolution crystal structures of p53 mutants and their interaction with DNA
Haim Rozenberg, Yael Diskin-Posner, Amir Eldar & Zippora Shakked
Page: 38
Published online: 29 May 2013
Abstractfor61 High-resolution crystal structures of p53 mutants and their interaction with DNA | References | PDF (49.5 KB)
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Abstract
62 Distinct nucleosome organization around p53 response elements associated with cell cycle arrest and apoptosis
Feng Cui & Victor B. Zhurkin
Pages: 39-40
Published online: 29 May 2013
Abstractfor62 Distinct nucleosome organization around p53 response elements associated with cell cycle arrest and apoptosis | References | PDF (165.4 KB)
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Abstract
63 EMSA detection of p53 sequence non-specific binding in PCR produced human DNA analogues
Jiri Cherven, Pavla Bazantova, Petr Pecinka, Barbora Chvatalova & Marie Brazdova
Page: 40
Published online: 29 May 2013
Abstractfor63 EMSA detection of p53 sequence non-specific binding in PCR produced human DNA analogues | Full Text | References | PDF (85.3 KB)
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Abstract
64 Hoogsteen or not Hoogsteen? Iodine-125 radioprobing of the p53-induced DNA deformations
Igor G. Panyutin, Valery N. Karamychev, Ronald D. Neumann, Sharlyn Mazur, Ettore Appella, Difei Wang & Victor B. Zhurkin
Page: 41
Published online: 29 May 2013
Abstractfor64 Hoogsteen or not Hoogsteen? Iodine-125 radioprobing of the p53-induced DNA deformations | References | PDF (51.1 KB)
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Abstract
65 QM-MM simulations on p53-DNA complex: comparison of DNA-binding property between cancer and their rescue mutants
Shruti Koulgi, Archana Achalere, Neeru Sharma, Uddhavesh Sonavane & Rajendra Joshi
Pages: 41-42
Published online: 29 May 2013
Abstractfor65 QM-MM simulations on p53-DNA complex: comparison of DNA-binding property between cancer and their rescue mutants | References | PDF (95 KB)
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Abstract
66 Architectural role of HMO1 in bending, bridging, and compacting DNA
Divakaran Murugesapillai, Micah J. McCauley, Ran Huo, Molly H. Nelson Holte, L. James Maher III, Nathan E. Israeloff & Mark C. Williams
Page: 42
Published online: 29 May 2013
Abstractfor66 Architectural role of HMO1 in bending, bridging, and compacting DNA | References | PDF (83.7 KB)
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Abstract
67 Covariation between homeodomains and the DNA shape of their binding sites provides new insights into protein–DNA recognition
Iris Dror, Tianyin Zhou, Yael Mandel-Gutfreund & Remo Rohs
Page: 43
Published online: 29 May 2013
Abstractfor67 Covariation between homeodomains and the DNA shape of their binding sites provides new insights into protein–DNA recognition | References | PDF (49.3 KB)
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Abstract
68 Deconvoluting the recognition of DNA shape from DNA sequence
Namiko Abe, Matthew Slattery, Iris Dror, Remo Rohs, Barry Honig & Richard S. Mann
Page: 43
Published online: 29 May 2013
Abstractfor68 Deconvoluting the recognition of DNA shape from DNA sequence | References | PDF (49.3 KB)
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Abstract
69 DNA-binding studies of large antiviral polyamides
Elena Vasilieva, Gaofei He, Kevin J. Koeller, G. Davis Harris, Cynthia M. Dupureur & James K. Bashkin
Page: 44
Published online: 29 May 2013
Abstractfor69 DNA-binding studies of large antiviral polyamides | Full Text | References | PDF (65.3 KB)
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Abstract
70 Electrostatic properties of bacterial DNA and promoter predictions
Evgenia A. Temlyakova, Timur R. Dzhelyadin, Svetlana G. Kamzolova & Anatoly A. Sorokin
Pages: 44-45
Published online: 29 May 2013
Abstractfor70 Electrostatic properties of bacterial DNA and promoter predictions | References | PDF (138.3 KB)
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Abstract
71 Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape
Raluca Gordân, Ning Shen, Iris Dror, Tianyin Zhou, John Horton, Remo Rohs & Martha L. Bulyk
Pages: 45-46
Published online: 29 May 2013
Abstractfor71 Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape | PDF (121.8 KB)
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Abstract
72 Get into shape: new insights into the broadly observed mechanism of DNA shape readout and its relation to genetic variation
Ana C.D. Machado, Tianyin Zhou & Remo Rohs
Page: 46
Published online: 29 May 2013
Abstractfor72 Get into shape: new insights into the broadly observed mechanism of DNA shape readout and its relation to genetic variation | References | PDF (49.9 KB)
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Abstract
73 Molecular dynamics approach for DNA duplex thermal stability prediction
Alexander Lomzov, Yury Vorobjev & Dmitryi Pyshnyi
Pages: 46-47
Published online: 29 May 2013
Abstractfor73 Molecular dynamics approach for DNA duplex thermal stability prediction | Full Text | References | PDF (89.8 KB)
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Abstract
74 Novel geometric approaches to uniquely characterize DNA-binding interfaces
Yael Mandel-Gutfreund
Pages: 47-48
Published online: 29 May 2013
Abstractfor74 Novel geometric approaches to uniquely characterize DNA-binding interfaces | References | PDF (135 KB)
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Abstract
75 OnTheFly database – structural basis to study TF’s DNA-binding specificity
Shula Shazman, Jie Chen, Hunjoong Lee, Peng Liu, Richard Mann & Barry Honig
Pages: 48-49
Published online: 29 May 2013
Abstractfor75 OnTheFly database – structural basis to study TF’s DNA-binding specificity | References | PDF (105.9 KB)
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Abstract
76 Protein–DNA binding and breathing dynamics of DNA
Boian S. Alexandrov, Kim Ø. Rasmussen, Alan R. Bishop & Anny Usheva
Page: 49
Published online: 29 May 2013
Abstractfor76 Protein–DNA binding and breathing dynamics of DNA | Full Text | References | PDF (53.7 KB)
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Abstract
77 Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin Lin, Troy W. Whitfield, Melissa C. Greven, Brian G. Pierce, Xianjun Dong, Anshul Kundaje, Yong Cheng, Oliver J. Rando, Ewan Birney, Richard M. Myers, William S. Noble, Michael Snyder & Zhiping Weng
Pages: 49-50
Published online: 29 May 2013
Abstractfor77 Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors | References | PDF (63.8 KB)
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Abstract
78 Structural studies of rolling circle replication initiator proteins
Stephen B. Carr, Lauren B. Mecia, Alice J. Stelfox, Simon E.V. Phillips & Christopher D. Thomas
Page: 50
Published online: 29 May 2013
Abstractfor78 Structural studies of rolling circle replication initiator proteins | PDF (52 KB)
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Abstract
79 Thermodynamic and kinetic studies of trinucleotide repeat (TNR) DNA
Ji Huang & Sarah Delaney
Pages: 50-51
Published online: 29 May 2013
Abstractfor79 Thermodynamic and kinetic studies of trinucleotide repeat (TNR) DNA | Full Text | References | PDF (60.8 KB)
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Abstract
80 A new approach in determining the rigidity of nucleic acids and polymers
Anton V. Sergeev, Natalia V. Lekontseva, Alexander A. Timchenko & Igor N. Serdyuk
Pages: 51-52
Published online: 29 May 2013
Abstractfor80 A new approach in determining the rigidity of nucleic acids and polymers | References | PDF (71.8 KB)
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Abstract
81 A new series of biologically active DNA minor groove binders based on bisbenzimidazole and benzimidazole-pyrrole motives
Alexander A. Ivanov, Olga Yu. Susova, Victor I. Salyanov, Kirill I. Kirsanov & Alexei L. Zhuze
Pages: 52-53
Published online: 29 May 2013
Abstractfor81 A new series of biologically active DNA minor groove binders based on bisbenzimidazole and benzimidazole-pyrrole motives | Full Text | References | PDF (110.4 KB)
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Abstract
82 Targeting intramolecular DNA structures with complementary strands
Calliste Reiling, Sarah E. Johnson, Hui-Ting Lee & Luis A. Marky
Page: 53
Published online: 29 May 2013
Abstractfor82 Targeting intramolecular DNA structures with complementary strands | Full Text | PDF (87.8 KB)
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Abstract
83 Application of differential scanning calorimetry to measure the differential binding of ions, water, and protons in the unfolding of DNA molecules
Chris M. Olson, Irine Khutsishvili, Sarah E. Johnson, Calliste Reiling & Luis A. Marky
Page: 54
Published online: 29 May 2013
Abstractfor83 Application of differential scanning calorimetry to measure the differential binding of ions, water, and protons in the unfolding of DNA molecules | Full Text | PDF (49.2 KB)
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Abstract
84 PPC measurements of unfolding volumes of DNA stem-loop motifs
Irine Khutshivilli, Iztok Prislan & Luis A. Marky
Page: 54
Published online: 29 May 2013
Abstractfor84 PPC measurements of unfolding volumes of DNA stem-loop motifs | Full Text | PDF (49.2 KB)
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Abstract
85 Bistable regime of adsorption of ligands on a macromolecule induced by an external noise
Valeri B. Arakelyan, Sos V. Harutyunyan, Vardan K. Andriasyan & Hakob V. Arakelyan
Page: 55
Published online: 29 May 2013
Abstractfor85 Bistable regime of adsorption of ligands on a macromolecule induced by an external noise | PDF (50.5 KB)
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Abstract
86 Characterization and differentiation of binding modes of water-soluble porphyrins at complexation with DNA
Vigen G. Barkhudaryan, Gayane V. Ananyan & Yeva B. Dalyan
Page: 56
Published online: 29 May 2013
Abstractfor86 Characterization and differentiation of binding modes of water-soluble porphyrins at complexation with DNA | PDF (50.5 KB)
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Abstract
87 The melting of DNA in the presence of meso-tetra-pyridyl porphyrins with different peripheral substituents
L. R. Aloyan & Y. B. Dalyan
Page: 56
Published online: 29 May 2013
Abstractfor87 The melting of DNA in the presence of meso-tetra-pyridyl porphyrins with different peripheral substituents | PDF (49.4 KB)
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Abstract
88 Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamic simulation and Poisson–Boltzmann approach
Timothy J. Robbins & Yongmei Wang
Pages: 56-57
Published online: 29 May 2013
Abstractfor88 Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamic simulation and Poisson–Boltzmann approach | Full Text | References | PDF (59.6 KB)
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Abstract
89 Computational mapping reveals effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde
T. Bohnuud, D. Beglov, C.H. Ngan, B. Zerbe, D.R. Hall, R. Brenke, S. Vajda, M.D. Frank-Kamenetskii & D. Kozakov
Page: 57
Published online: 29 May 2013
Abstractfor89 Computational mapping reveals effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde | Full Text | References | PDF (50.7 KB)
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Abstract
90 Intra-accumbens injection of a dopamine aptamer abates MK-801-induced cognitive dysfunction in a model of Schizophrenia
Erin M. McConnell, Matthew R. Holahan, Dan Madularu, Ryan Walsh & Maria C. DeRosa
Pages: 57-58
Published online: 29 May 2013
Abstractfor90 Intra-accumbens injection of a dopamine aptamer abates MK-801-induced cognitive dysfunction in a model of Schizophrenia | PDF (61.6 KB)
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Abstract
91 Kinetics of DNA overstretching: melting vs. B-to-S transition
Micah J. McCauley, Ioulia Rouzina & Mark C. Williams
Page: 58
Published online: 29 May 2013
Abstractfor91 Kinetics of DNA overstretching: melting vs. B-to-S transition | PDF (51.5 KB)
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Abstract
92 Novel interpretation of the isotherms of multimodal ligands binding with DNA
Poghos O. Vardevanyan, Valeri B. Arakelyan, Ara P. Antonyan, Zhanna H. Mukhaelyan, Lilit A. Hambardzumyan & Armen T. Karapetian
Page: 58
Published online: 29 May 2013
Abstractfor92 Novel interpretation of the isotherms of multimodal ligands binding with DNA | References | PDF (51.5 KB)
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Abstract
93 Spectroscopic investigation of methylene blue binding to DNA
Poghos O. Vardevanyan, Ara P. Antonyan, Marine A. Parsadanyan, Mariam A. Shahinyan, Lilit A. Hambrdzumyan, Mikayel V. Minasyants & Armen T. Karapetian
Page: 59
Published online: 29 May 2013
Abstractfor93 Spectroscopic investigation of methylene blue binding to DNA | References | PDF (52.5 KB)
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Abstract
94 The investigation of Hoechst 33258 interaction with DNA in aqueous solutions of dimethylsulfoxide
Poghos O. Vardevanyan, Ara P. Antonyan, Karen Yu. Amirbekyan & Shiraz A. Markarian
Pages: 59-60
Published online: 29 May 2013
Abstractfor94 The investigation of Hoechst 33258 interaction with DNA in aqueous solutions of dimethylsulfoxide | References | PDF (61.8 KB)
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Abstract
95 Orientational ordering of short DNA fragments in the polymer matrix
Zareh A. Grigoryan, Yevgeni Sh. Mamasakhlisov & Armen T. Karapetian
Page: 60
Published online: 29 May 2013
Abstractfor95 Orientational ordering of short DNA fragments in the polymer matrix | References | PDF (51.5 KB)
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Abstract
96 Study of the stacking of DNA homoassociates by the extended cluster approach
Victor I. Danilov & Vladimir V. Dailidonis
Pages: 60-61
Published online: 29 May 2013
Abstractfor96 Study of the stacking of DNA homoassociates by the extended cluster approach | Full Text | References | PDF (59.4 KB)
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Abstract
97 Study on electron transfer through RNA/DNA duplex using pyrene and 5-bromouracil as an electron donor and acceptor pair
Tadao Takada, Kenji Maie, Yumiko Otsuka, Tomohiro Saeki, Yuta Takamatsu, Mitsunobu Nakamura & Kazushige Yamana
Pages: 61-62
Published online: 29 May 2013
Abstractfor97 Study on electron transfer through RNA/DNA duplex using pyrene and 5-bromouracil as an electron donor and acceptor pair | References | PDF (98.5 KB)
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Abstract
98 The impact of active metabolites obtained from saffron on H1–Oligonucleotide interaction
Reyhane Hoshyar & S. Zahra Bathaie
Page: 62
Published online: 29 May 2013
Abstractfor98 The impact of active metabolites obtained from saffron on H1–Oligonucleotide interaction | PDF (87.8 KB)
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Abstract
99 The role of the linker and aromatic pendent in Zn(II) complexes for recognition to noncanonical thymine in DNA
Stephanie A. Sander & Janet R. Morrow
Pages: 62-63
Published online: 29 May 2013
Abstractfor99 The role of the linker and aromatic pendent in Zn(II) complexes for recognition to noncanonical thymine in DNA | References | PDF (136.7 KB)
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Abstract
100 Bridging the gap: from 1D to 3D genomics
Lin Yang, Tianyin Zhou & Remo Rohs
Pages: 63-64
Published online: 29 May 2013
Abstractfor100 Bridging the gap: from 1D to 3D genomics | References | PDF (141.6 KB)
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Abstract
101 Exploring the 3D spatial organization of the genome
Frank Alber
Page: 64
Published online: 29 May 2013
Abstractfor101 Exploring the 3D spatial organization of the genome | PDF (94.3 KB)
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Abstract
102 Genome engineering nucleases derived from GIY-YIG homing endonucleases
David Edgell, Benjamin Kleinstiver, Jason M. Wolfs, Li Wang, Tomasz Kolaczyk, Brendon McDowell & Adam Bogdanove
Pages: 64-65
Published online: 29 May 2013
Abstractfor102 Genome engineering nucleases derived from GIY-YIG homing endonucleases | Full Text | References | PDF (117.6 KB)
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Abstract
103 Probing DNA shape and methylation state on a genomic scale with DNase I
Allan Lazarovici, Tianyin Zhou, Anthony Shafer, Ana Carolina Dantas Machado, Richard Sandstrom, Peter J. Sabo, Yan Lu, Remo Rohs, John A. Stamatoyannopoulos & Harmen J. Bussemaker
Page: 65
Published online: 29 May 2013
Abstractfor103 Probing DNA shape and methylation state on a genomic scale with DNase I | References | PDF (65.2 KB)
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Abstract
104 Probing DNA shape on molecular and genomic scales
Tianyin Zhou & Remo Rohs
Page: 66
Published online: 29 May 2013
Abstractfor104 Probing DNA shape on molecular and genomic scales | References | PDF (49.4 KB)
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Abstract
105 Activity of DNA ligase on substrates containing non-canonical structures
Katharina Bilotti, Kelly Schermerhorn & Sarah Delaney
Pages: 66-67
Published online: 29 May 2013
Abstractfor105 Activity of DNA ligase on substrates containing non-canonical structures | Full Text | References | PDF (64.6 KB)
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Abstract
106 Deriving force field dihedral angle parameters that account for conformation-dependent solvation effects
Petr Jurečka, Marie Zgarbová, F. Javier Luque, Jiří Šponer & Michal Otyepka
Page: 67
Published online: 29 May 2013
Abstractfor106 Deriving force field dihedral angle parameters that account for conformation-dependent solvation effects | PDF (56.4 KB)
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Abstract
107 Genomes to hit molecules In Silico: a country path today, a highway tomorrow: a case study of Chikungunya
Anjali Soni, Priyanka Dhingra, Avinash Mishra, Tanya Singh, Goutam Mukherjee & B. Jayaram
Pages: 67-68
Published online: 29 May 2013
Abstractfor107 Genomes to hit molecules In Silico: a country path today, a highway tomorrow: a case study of Chikungunya | References | PDF (67.1 KB)
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Abstract
108 Individual-particle electron tomography: a method for studying macromolecule dynamics
Lei Zhang & Gang Ren
Page: 68
Published online: 29 May 2013
Abstractfor108 Individual-particle electron tomography: a method for studying macromolecule dynamics | Full Text | References | PDF (54.9 KB)
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Abstract
109 Molecular dynamics done quick: efficient trajectory analysis software
Alexander V. Popov, Yuri N. Vorobjev & Dmitry O. Zharkov
Pages: 68-69
Published online: 29 May 2013
Abstractfor109 Molecular dynamics done quick: efficient trajectory analysis software | Full Text | References | PDF (97.9 KB)
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Abstract
110 Refinement of force field torsion parameters for nucleic acids based on inclusion of conformation-dependent solvation effects
Marie Zgarbová, Michal Otyepka, Pavel Banáš, F. Javier Luque, Thomas E. Cheatham III, Jiří Šponer & Petr Jurečka
Page: 70
Published online: 29 May 2013
Abstractfor110 Refinement of force field torsion parameters for nucleic acids based on inclusion of conformation-dependent solvation effects | Full Text | References | PDF (54.3 KB)
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Abstract
111 Towards the manifold representations of biological object
Yu.N. Zhuravlev, M.A. Guzev & E.E. Skurichin
Pages: 70-71
Published online: 29 May 2013
Abstractfor111 Towards the manifold representations of biological object | Full Text | References | PDF (67.6 KB)
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Abstract
112 The importance of being modified: tautomeric forms of pyrimidines provide expanded use of the genetic code
William A. Cantara, Franck A.P. Vendeix, Franck V. Murphy IV, Graźyna Leszcyńska, Kimberly Harris, Estella M. Gustilo, Brian Sproat, Rob Kaiser, Andrzej Malkiewicz & Paul F. Agris
Pages: 71-72
Published online: 29 May 2013
Abstractfor112 The importance of being modified: tautomeric forms of pyrimidines provide expanded use of the genetic code | Full Text | References | PDF (94.6 KB)
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Abstract
113 Conformational dynamics of human 8-oxoguanine-DNA glycosylase
Nikita A. Kuznetsov & Olga S. Fedorova
Page: 72
Published online: 29 May 2013
Abstractfor113 Conformational dynamics of human 8-oxoguanine-DNA glycosylase | Full Text | References | PDF (80.5 KB)
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Abstract
114 Kinetic and thermodynamic basis for damaged bases excision by 8-oxoguanine-DNA glycosylases
Anton Endutkin & Dmitry Zharkov
Pages: 72-73
Published online: 29 May 2013
Abstractfor114 Kinetic and thermodynamic basis for damaged bases excision by 8-oxoguanine-DNA glycosylases | Full Text | References | PDF (87.7 KB)
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Abstract
115 The rate of hOGG1-mediated 8-oxoG removal from nucleosomal DNA
Eric D. Olmon & Sarah Delaney
Pages: 73-74
Published online: 29 May 2013
Abstractfor115 The rate of hOGG1-mediated 8-oxoG removal from nucleosomal DNA | Full Text | References | PDF (76.1 KB)
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Abstract
116 Deamination of both methyl- and normal-cytosine by the foreign DNA restriction enzyme APOBEC3A
Michael A. Carpenter, Ming Li, Anurag Rathore, Lela Lackey, Emily K. Law, Allison M. Land, Brandon Leonard, Shivender M.D. Shandilya, Markus-Frederik Bohn, Celia A. Schiffer, William L Brown & Reuben S. Harris
Page: 74
Published online: 29 May 2013
Abstractfor116 Deamination of both methyl- and normal-cytosine by the foreign DNA restriction enzyme APOBEC3A | Full Text | References | PDF (68.5 KB)
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Abstract
117 Non-B DNA structure-induced genetic instability in mammalian cells
Guliang Wang, Laura A. Christensen, Scott A. Spitser & Karen M. Vasquez
Pages: 74-75
Published online: 29 May 2013
Abstractfor117 Non-B DNA structure-induced genetic instability in mammalian cells | Full Text | References | PDF (77.7 KB)
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Abstract
118 DNA structure-induced genetic instability in mammals
Guliang Wang, Laura A. Christensen & Karen M. Vasquez
Page: 75
Published online: 29 May 2013
Abstractfor118 DNA structure-induced genetic instability in mammals | Full Text | References | PDF (51 KB)
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Abstract
119 Fork stalling at AT-rich sequences and failure of origin activation lead to chromosomal instability at fragile sites
Efrat Ozeri-Galai, Michal Irony-Tur Sinai & Batsheva Kerem
Pages: 75-76
Published online: 29 May 2013
Abstractfor119 Fork stalling at AT-rich sequences and failure of origin activation lead to chromosomal instability at fragile sites | Full Text | PDF (60.2 KB)
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Abstract
120 Genome-wide mapping of DNA strand breaks in Saccharomyces cerevisiae
Hari K.K. Subramanian, Sarah E. Bernard, Cheryl Chiang, Stephen C. J. Parker & Thomas D. Tullius
Page: 76
Published online: 29 May 2013
Abstractfor120 Genome-wide mapping of DNA strand breaks in Saccharomyces cerevisiae | Full Text | PDF (48.3 KB)
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Abstract
121 Influence of changes in DNA conformation on thermodynamic contribution during interaction of human genomic DNA and its mutant with anticancer drugs
Debjani Ghosh, Subrata Kumar Dey & Chabita Saha
Page: 77
Published online: 29 May 2013
Abstractfor121 Influence of changes in DNA conformation on thermodynamic contribution during interaction of human genomic DNA and its mutant with anticancer drugs | References | PDF (89.7 KB)
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Abstract
122 Kinetics of apurinic/apyrimidinic endonuclease 1 (APE1) on an authentic AP site or an AP site analog
Kelly M. Schermerhorn & Sarah Delaney
Page: 78
Published online: 29 May 2013
Abstractfor122 Kinetics of apurinic/apyrimidinic endonuclease 1 (APE1) on an authentic AP site or an AP site analog | Full Text | References | PDF (52.1 KB)
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Abstract
123 Mini-chromosome maintenance complexes form a filament to remodel DNA structure and topology
Ian M. Slaymaker, Yang Fu, Daniel B. Toso, Nimna Ranatunga, Aaron Brewster, Susan L. Forsburg, Z. Hong Zhou & Xiaojiang S. Chen
Pages: 78-79
Published online: 29 May 2013
Abstractfor123 Mini-chromosome maintenance complexes form a filament to remodel DNA structure and topology | PDF (125.9 KB)
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Abstract
124 Evaluation of different DNA polymerases for their effectiveness in using a cytosine analogue during real-time PCR amplification
Cyntia R. Flores-Juárez, Eva González-Jasso, Anaid Antaramian & Reynaldo C. Pless
Pages: 79-80
Published online: 29 May 2013
Abstractfor124 Evaluation of different DNA polymerases for their effectiveness in using a cytosine analogue during real-time PCR amplification | Full Text | PDF (185.9 KB)
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Abstract
125 Put a stop to it: termination of mitochondrial transcription
E. Yakubovskaya, E. Mejia, J. Byrnes, E. Hambardjieva & M. Garcia-Diaz
Pages: 80-81
Published online: 29 May 2013
Abstractfor125 Put a stop to it: termination of mitochondrial transcription | Full Text | References | PDF (119.9 KB)
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Abstract
126 Replication impairment as a source of transcription- and R-loop-associated recombination
Maikel Castellano-Pozo, Irene Felipe-Abrio, María L. García-Rubio, Juan F. Lafuente-Barquero, Jose María Santos-Pereira, Tatiana García-Muse & Andrés Aguilera
Page: 81
Published online: 29 May 2013
Abstractfor126 Replication impairment as a source of transcription- and R-loop-associated recombination | Full Text | References | PDF (49.4 KB)
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Abstract
127 Template-switching during DNA replication
Susan T. Lovett
Pages: 81-82
Published online: 29 May 2013
Abstractfor127 Template-switching during DNA replication | Full Text | PDF (73.5 KB)
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Abstract
128 Some derivatives of 1,3-diazaadamantane strongly stimulate strand exchange reaction between short oligonucleotides
Anna Gabrielian, Tatiana N. Bocharova, Elena A. Smirnova Alexander, A. Volodin, Amalya Harutjunyan, Knarik Gevorkyan & Gayane Harutjunyan
Page: 82
Published online: 29 May 2013
Abstractfor128 Some derivatives of 1,3-diazaadamantane strongly stimulate strand exchange reaction between short oligonucleotides | References | PDF (65.2 KB)
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Abstract
129 The molecular mechanism of breakage at fragile site FRA16D
Simran Kaushal, Soo-Mi Alison Lee, Nealia House, Keerthana Gnanapradeepan, Adam Snider, Xiaofeng Allen Su & Catherine H. Freudenreich
Page: 83
Published online: 29 May 2013
Abstractfor129 The molecular mechanism of breakage at fragile site FRA16D | Full Text | References | PDF (49.6 KB)
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Abstract
130 Transcription blockage by single-strand breaks in various sequences and the general model for transcription blockage by R-loop formation
Boris P. Belotserkovskii, Alexander J. Neil, Syed Shayon Saleh, Jane Hae Soo Shin, Sergei M. Mirkin & Philip C. Hanawalt
Pages: 83-84
Published online: 29 May 2013
Abstractfor130 Transcription blockage by single-strand breaks in various sequences and the general model for transcription blockage by R-loop formation | Full Text | References | PDF (60.9 KB)
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Abstract
131 Using whole-genome sequencing to search for trans-modifiers of repeat expansions
Ryan McGinty, Anna Aksenova, Eric Wang, David Hausman & Sergei Mirkin
Page: 84
Published online: 29 May 2013
Abstractfor131 Using whole-genome sequencing to search for trans-modifiers of repeat expansions | References | PDF (53.1 KB)
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Abstract
132 Impact of sticky end length on the diffraction of self-assembled DNA crystals
Yoel P. Ohayon, Arun Richard Chandrasekaran, Esra Demirel, Sabrine I. Obbad, Rutu C. Shah, Victoria T. Adesoba, Matthew Lehmann, Jens J. Birktoft, Ruojie Sha, Paul M. Chaikin & Nadrian C. Seeman
Pages: 84-85
Published online: 29 May 2013
Abstractfor132 Impact of sticky end length on the diffraction of self-assembled DNA crystals | Full Text | References | PDF (63 KB)
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Abstract
133 Designed DNA crystals with a triple-helix veneer
Arun Richard Chandrasekaran, David A. Rusling, Yoel P. Ohayon, Ruojie Sha & Nadrian C. Seeman
Page: 85
Published online: 29 May 2013
Abstractfor133 Designed DNA crystals with a triple-helix veneer | Full Text | References | PDF (52.8 KB)
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Abstract
134 Encapsulation of antitumor drugs tamoxifen, 4-hydroxytamoxifen and endoxifen by chitosan nanoparticles
H.A. Tajmir-Riahi, D. Agudelo & S. Sanyakamdhorn
Pages: 85-86
Published online: 29 May 2013
Abstractfor134 Encapsulation of antitumor drugs tamoxifen, 4-hydroxytamoxifen and endoxifen by chitosan nanoparticles | References | PDF (91 KB)
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Abstract
135 Arranging enzymes and receptors with nanometer-scale precision on molecular switchboards
Ngo Anh Tien, Eiji Nakata & Takashi Morii
Page: 86
Published online: 29 May 2013
Abstractfor135 Arranging enzymes and receptors with nanometer-scale precision on molecular switchboards | References | PDF (78.9 KB)
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Abstract
136 Dendritic Alkyl Chains on DNA Cages: A Geometry-Dependent Inter- or Intramolecular “Handshake”
Thomas G.W. Edwardson, Karina M.M. Carneiro, Christopher K. McLaughlin, Christopher J. Serpell & Hanadi F. Sleiman
Page: 87
Published online: 29 May 2013
Abstractfor136 Dendritic Alkyl Chains on DNA Cages: A Geometry-Dependent Inter- or Intramolecular “Handshake” | Full Text | References | PDF (86.1 KB)
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Abstract
137 DNA nanostructure serum stability: greater than the sum of their parts
Justin W. Conway, Christopher K. McLaughlin, Katherine J. Castor & Hanadi Sleiman
Page: 88
Published online: 29 May 2013
Abstractfor137 DNA nanostructure serum stability: greater than the sum of their parts | References | PDF (67.9 KB)
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Abstract
138 Optimizing DNA nanotube design for future applications
Graham D. Hamblin & Hanadi F. Sleiman
Pages: 88-89
Published online: 29 May 2013
Abstractfor138 Optimizing DNA nanotube design for future applications | Full Text | References | PDF (104.1 KB)
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Abstract
139 Development and application of crop exudate specific aptamers
Emily Mastronardi, Maureen Mckeague, Carlos Monreal & Maria DeRosa
Page: 89
Published online: 29 May 2013
Abstractfor139 Development and application of crop exudate specific aptamers | References | PDF (74.8 KB)
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Abstract
140 Development of nanoscale aptamer films for controlled release of encapsulated payloads
Amanda G. Foster, Yasir Sultan, Carlos Monreal & Maria C. DeRosa
Page: 90
Published online: 29 May 2013
Abstractfor140 Development of nanoscale aptamer films for controlled release of encapsulated payloads | References | PDF (78.8 KB)
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Abstract
141 DNA origami as a platform for assembly of nanophotonic elements
Yan Liu
Pages: 90-91
Published online: 29 May 2013
Abstractfor141 DNA origami as a platform for assembly of nanophotonic elements | Full Text | References | PDF (86.3 KB)
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Abstract
142 Non-canonical base pairing motifs in DNA crystal design
Chun Geng, Stephanie E. Muser & Paul J. Paukstelis
Page: 91
Published online: 29 May 2013
Abstractfor142 Non-canonical base pairing motifs in DNA crystal design | Full Text | References | PDF (49.3 KB)
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Abstract
143 Porous three-dimensional DNA crystals as biomolecular containers for catalysis
Chun Geng & Paul J. Paukstelis
Pages: 91-92
Published online: 29 May 2013
Abstractfor143 Porous three-dimensional DNA crystals as biomolecular containers for catalysis | Full Text | References | PDF (93.8 KB)
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Abstract
144 Sculpting light with DNA origami
Anton Kuzyk, Robert Schreiber, Zhiyuan Fan, Günther Pardatscher, Eva-Maria Roller, Alexander Högele, Friedrich C. Simmel, Alexander O. Govorov & Tim Liedl
Pages: 92-93
Published online: 29 May 2013
Abstractfor144 Sculpting light with DNA origami | Full Text | References | PDF (191.2 KB)
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Abstract
145 Single-molecule observation of enzymes and DNA structural changes in the DNA nanostructures
Hiroshi Sugiyama & Masayuki Endo
Pages: 93-94
Published online: 29 May 2013
Abstractfor145 Single-molecule observation of enzymes and DNA structural changes in the DNA nanostructures | References | PDF (154.6 KB)
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Abstract
146 Amyloid fibril polymorphism probed by advanced vibrational spectroscopy
Igor K. Lednev & Dmitry Kurouski
Pages: 94-95
Published online: 29 May 2013
Abstractfor146 Amyloid fibril polymorphism probed by advanced vibrational spectroscopy | Full Text | References | PDF (60.1 KB)
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Abstract
147Characterizing the conformational space of two disordered peptides in different solutions
Ana V. Rojas, David Easterhoff, John T.M. DiMaio, Stephen Dewhurst, Alan Grossfield, Hongyu Miao & Bradley L. Nilsson
Page: 95
Published online: 29 May 2013
Abstractfor147Characterizing the conformational space of two disordered peptides in different solutions | Full Text | References | PDF (53.3 KB)
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Abstract
148 Evolutionary dynamics of conformational flexibility
Juan F. Ortiz, Patrick Masterson, Madolyn Macdonald, Vladimir N. Uversky & Jessica Siltberg-Liberles
Pages: 95-96
Published online: 29 May 2013
Abstractfor148 Evolutionary dynamics of conformational flexibility | Full Text | PDF (61.8 KB)
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Abstract
149 Generating context-specific functions with intrinsically disordered domains
Ying Liu, Kathleen S. Matthews & Sarah E. Bondos
Pages: 96-97
Published online: 29 May 2013
Abstractfor149 Generating context-specific functions with intrinsically disordered domains | References | PDF (71.1 KB)
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Abstract
150 Getting a grip on alpha-synuclein amyloid oligomers
Vinod Subramaniam
Page: 97
Published online: 29 May 2013
Abstractfor150 Getting a grip on alpha-synuclein amyloid oligomers | Full Text | References | PDF (62.2 KB)
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Abstract
151 Network inference and analysis of Parkinson’s disease
Antonio Del Sol Mesa
Page: 98
Published online: 29 May 2013
Abstractfor151 Network inference and analysis of Parkinson’s disease | PDF (70.1 KB)
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Abstract
152 Order from disorder: defining structure in disordered proteins
Shana Elbaum-Garfinkle, Garrett Cobb, Abhinav Nath & Elizabeth Rhoades
Page: 98
Published online: 29 May 2013
Abstractfor152 Order from disorder: defining structure in disordered proteins | Full Text | PDF (70.1 KB)
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Abstract
153 Wonderful roles of the entropy in protein dynamics, binding and folding
Yue-Hui Xie, Yan Tao & Shu-Qun Liu
Pages: 98-100
Published online: 29 May 2013
Abstractfor153 Wonderful roles of the entropy in protein dynamics, binding and folding | Full Text | References | PDF (86.3 KB)
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Abstract
154 Protein folding and binding funnels: a common driving force and a common mechanism
Yue-Hui Xie, Peng Sang, Yan Tao & Shu-Qun Liu
Pages: 100-101
Published online: 29 May 2013
Abstractfor154 Protein folding and binding funnels: a common driving force and a common mechanism | Full Text | References | PDF (108.8 KB)
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Abstract
155 3D QSAR and protein–protein interaction studies on neuraminidase against Clostridium perfringens: An approach toward target identification using structure-based drug designing
Pallavi Somvanshi, Suruchi Rai & Bhartendu Nath Mishra
Page: 101
Published online: 29 May 2013
Abstractfor155 3D QSAR and protein–protein interaction studies on neuraminidase against Clostridium perfringens: An approach toward target identification using structure-based drug designing | PDF (101.5 KB)
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Abstract
156 A cutting-edge to drug discovery in Cancer; Cyclins as novel, targets - an in silico technique
P. Sarita Rajender, K. Bhargavi, D. Ramasree & V. Uma
Page: 102
Published online: 29 May 2013
Abstractfor156 A cutting-edge to drug discovery in Cancer; Cyclins as novel, targets - an in silico technique | References | PDF (68.4 KB)
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Abstract
157 Identification of intein inhibitors as novel anti-microbials with relevance to tuberculosis
Seth Pearson, Brian Callahan, Georges Belfort & Marlene Belfort
Page: 102
Published online: 29 May 2013
Abstractfor157 Identification of intein inhibitors as novel anti-microbials with relevance to tuberculosis | PDF (68.4 KB)
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Abstract
158 A molecular dynamics simulation-based prediction of deleterious angiogenin mutations causing amyotrophic lateral sclerosis
Aditya K. Padhi, B. Jayaram & James Gomes
Page: 103
Published online: 29 May 2013
Abstractfor158 A molecular dynamics simulation-based prediction of deleterious angiogenin mutations causing amyotrophic lateral sclerosis | References | PDF (50.7 KB)
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Abstract
159 Computational approach for optimizing inhibitors of 1HWK (HMG-CoA reductase)
Ramakrishna Annabhimoju & Uma Vuruputuri
Pages: 103-104
Published online: 29 May 2013
Abstractfor159 Computational approach for optimizing inhibitors of 1HWK (HMG-CoA reductase) | References | PDF (153.3 KB)
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Abstract
160 A dynamic model for the linker histone
Stefjord Todolli & Wilma K. Olson
Page: 104
Published online: 29 May 2013
Abstractfor160 A dynamic model for the linker histone | References | PDF (142.5 KB)
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Abstract
161 Discovery of potent KdsA inhibitors of Leptospira interrogans through homology modeling, docking, and molecular dynamics simulations
Dibyabhaba Pradhan, Vani Priyadarshini, Manne Munikumar, Sandeep Swargam & Amineni Umamaheswari
Page: 105
Published online: 29 May 2013
Abstractfor161 Discovery of potent KdsA inhibitors of Leptospira interrogans through homology modeling, docking, and molecular dynamics simulations | Full Text | References | PDF (82.6 KB)
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Abstract
162 Dominant forces in protein folding
Arieh Ben-Naim
Page: 106
Published online: 29 May 2013
Abstractfor162 Dominant forces in protein folding | References | PDF (54.1 KB)
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Abstract
163 Enhanced sampling of peptides and proteins with a new biasing replica exchange method
Katja Ostermeir & Martin Zacharias
Page: 106
Published online: 29 May 2013
Abstractfor163 Enhanced sampling of peptides and proteins with a new biasing replica exchange method | References | PDF (54.1 KB)
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Abstract
164 Extracting dynamics information from multiple structures
Robert L. Jernigan, Jie Liu, Kannan Sankar, Kejue Jia & Michael T. Zimmermann
Pages: 106-107
Published online: 29 May 2013
Abstractfor164 Extracting dynamics information from multiple structures | Full Text | PDF (101.2 KB)
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Abstract
165 Protein domains: a thermodynamic definition
Lauren L. Porter & George D. Rose
Page: 107
Published online: 29 May 2013
Abstractfor165 Protein domains: a thermodynamic definition | PDF (84.3 KB)
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Abstract
166 Millisecond-long molecular dynamics simulations of proteins on a special-purpose machine
David E. Shaw
Page: 108
Published online: 29 May 2013
Abstractfor166 Millisecond-long molecular dynamics simulations of proteins on a special-purpose machine | PDF (66.3 KB)
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Abstract
167 Network properties of decoy and CASP predicted models: a comparison with native protein structures
S. Chatterjee, S. Ghosh & S. Vishveshwara
Pages: 108-109
Published online: 29 May 2013
Abstractfor167 Network properties of decoy and CASP predicted models: a comparison with native protein structures | Full Text | References | PDF (123.1 KB)
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Abstract
168 NMR study of RQC domain of BLM protein
Vee Vee Cheong, Brahim Heddi & Anh Tuân Phan
Page: 109
Published online: 29 May 2013
Abstractfor168 NMR study of RQC domain of BLM protein | PDF (97.8 KB)
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Abstract
169 Polymorphic assembly of computationally designed hydrophobic-rich collagen peptides
Kenneth N. McGuinness & Vikas Nanda
Page: 109
Published online: 29 May 2013
Abstractfor169 Polymorphic assembly of computationally designed hydrophobic-rich collagen peptides | Full Text | References | PDF (97.8 KB)
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Abstract
170 GMPC model and the helix–coil transition in biopolymers
V.F. Morozov, Sh.A. Tonoyan, L.V. Melkonyan, N.L. Poghosyan & Sh.A. Sargsyan
Page: 110
Published online: 29 May 2013
Abstractfor170 GMPC model and the helix–coil transition in biopolymers | References | PDF (49.6 KB)
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Abstract
171 Protein structure prediction with limited data
Alberto Perez, Justin MacCallum & Ken Dill
Page: 110
Published online: 29 May 2013
Abstractfor171 Protein structure prediction with limited data | PDF (49.6 KB)
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Abstract
172 Role of conserved water molecular triad in the recognition of IMP, NAD+ with Asp 274, Asn 303, Arg 322, and Asp 364 in both the isoform of hIMPDH
Deepak K. Mishra, Hridoy R. Bairagya & Bishnu P. Mukhopadhyay
Page: 111
Published online: 29 May 2013
Abstractfor172 Role of conserved water molecular triad in the recognition of IMP, NAD+ with Asp 274, Asn 303, Arg 322, and Asp 364 in both the isoform of hIMPDH | Full Text | References | PDF (126 KB)
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Abstract
173 Role of free cysteines in leptin receptor
R. Karthick, Gokul Raghunath, Sharmila Anishetty & R. Malathi
Page: 112
Published online: 29 May 2013
Abstractfor173 Role of free cysteines in leptin receptor | References | PDF (51.7 KB)
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Abstract
174 Self-association prompts proteins for new function: The role of altered dynamic properties
Shoshana J. Wodak, Michael Garton, Anatoly Malevanets & Stephen McKinnon
Page: 112
Published online: 29 May 2013
Abstractfor174 Self-association prompts proteins for new function: The role of altered dynamic properties | PDF (51.7 KB)
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Abstract
175 Structure-based engineering to generate high-affinity immunotherapy for the drug of abuse
Shraddha Thakkar, Nisha Nanaware-Kharade, Guillermo Gonzalez III, Reha Celikel, Eric Peterson & Kottayil I. Varughese
Pages: 112-113
Published online: 29 May 2013
Abstractfor175 Structure-based engineering to generate high-affinity immunotherapy for the drug of abuse | References | PDF (99.9 KB)
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Abstract
176 Structure-based virtual screening towards identification of potential FabH inhibitors
Vani Priyadarshini, Dibyabhaba Pradhan, Manne Munikumar, Sandeep Swargam & Amineni Umamaheswari
Pages: 113-114
Published online: 29 May 2013
Abstractfor176 Structure-based virtual screening towards identification of potential FabH inhibitors | Full Text | References | PDF (151.8 KB)
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Abstract
177 T-cell vaccine design for Streptococcus pneumoniae: an in silico approach
Manne Munikumar, Vani Priyadarshini, Dibyabhaba Pradhan, Sandeep Swargam & Amineni Umamaheswari
Pages: 114-115
Published online: 29 May 2013
Abstractfor177 T-cell vaccine design for Streptococcus pneumoniae: an in silico approach | Full Text | References | PDF (114.2 KB)
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Abstract
178 Targeting “Beta lactamase-C” in development of novel anti-tuberculosis therapeutics
Saugata Hazra & John S. Blanchard
Page: 115
Published online: 29 May 2013
Abstractfor178 Targeting “Beta lactamase-C” in development of novel anti-tuberculosis therapeutics | References | PDF (51.2 KB)
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Abstract
179 Impact of cancer mutations on protein binding and activity
Anna Panchenko
Pages: 115-116
Published online: 29 May 2013
Abstractfor179 Impact of cancer mutations on protein binding and activity | References | PDF (59.5 KB)
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Abstract
180 Integrating structural and systems biology: structure-based prediction of protein–protein interactions on a genome-wide scale
Qiangfeng Cliff Zhang, Donald Petrey & Barry Honig
Page: 116
Published online: 29 May 2013
Abstractfor180 Integrating structural and systems biology: structure-based prediction of protein–protein interactions on a genome-wide scale | Full Text | References | PDF (49.9 KB)
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Abstract
181 Integrative analysis of gene expression and protein–protein interaction networks in Glioblastoma
Seema Mishra
Pages: 116-117
Published online: 29 May 2013
Abstractfor181 Integrative analysis of gene expression and protein–protein interaction networks in Glioblastoma | References | PDF (60 KB)
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Abstract
182 Investigating the mode of action of an essential OBG GTPase, CgtA in bacteria
Ananya Chatterjee & Partha P. Datta
Page: 117
Published online: 29 May 2013
Abstractfor182 Investigating the mode of action of an essential OBG GTPase, CgtA in bacteria | Full Text | References | PDF (51.3 KB)
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Abstract
183 Isolation and partial characterization of a general hormone transporting blood protein complex
Margarita I. Garipova & Rita R. Usmanova
Page: 118
Published online: 29 May 2013
Abstractfor183 Isolation and partial characterization of a general hormone transporting blood protein complex | References | PDF (89.7 KB)
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Abstract
184 Small molecule identification against novel MDRA protein of Mycobacterium tuberculosis
M. Kiran Kumar, M. Vasavi, C. Venkataramana Reddy & V. Uma
Pages: 118-119
Published online: 29 May 2013
Abstractfor184 Small molecule identification against novel MDRA protein of Mycobacterium tuberculosis | References | PDF (168.6 KB)
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Abstract
185 Vascular endothelial growth factor receptor-2 (VEGFR2): structure and functional relationship
Jhansi Rani Nathan, Shilpi Shika & Malathi Ragunathan
Page: 119
Published online: 29 May 2013
Abstractfor185 Vascular endothelial growth factor receptor-2 (VEGFR2): structure and functional relationship | References | PDF (141.1 KB)
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Abstract
186 Molecular dynamics and ligand based studies for the validation of potential inhibitors for SrtA against Bacillus anthracis
Sanjeev Kumar Singh & Chandrabose Selvaraj
Pages: 119-120
Published online: 29 May 2013
Abstractfor186 Molecular dynamics and ligand based studies for the validation of potential inhibitors for SrtA against Bacillus anthracis | References | PDF (205.1 KB)
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Abstract
187 Plucking the high hanging fruit: a systematic approach for targeting protein interfaces
Paramjit S. Arora
Pages: 120-121
Published online: 29 May 2013
Abstractfor187 Plucking the high hanging fruit: a systematic approach for targeting protein interfaces | Full Text | References | PDF (112.4 KB)
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Abstract
188 Using CG modeling in exploring the role of dynamical effects in catalysis and in simulating biological molecular machines
Arieh Warshel
Page: 121
Published online: 29 May 2013
Abstractfor188 Using CG modeling in exploring the role of dynamical effects in catalysis and in simulating biological molecular machines | References | PDF (50.4 KB)
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Abstract
189 Structural articulation of biochemical reactions using altered bonds and iterative topology switching
Swati R. Manjari & Nilesh K. Banavali
Pages: 121-122
Published online: 29 May 2013
Abstractfor189 Structural articulation of biochemical reactions using altered bonds and iterative topology switching | Full Text | PDF (88.4 KB)
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Abstract
190 The peculiarities of regulation of Yarrowia lipolytica yeast and citric acid overproduction
Igor G. Morgunov & Svetlana V. Kamzolova
Pages: 122-123
Published online: 29 May 2013
Abstractfor190 The peculiarities of regulation of Yarrowia lipolytica yeast and citric acid overproduction | References | PDF (88 KB)
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Abstract
191 Point mutations in the yeast Pma1 H+-ATPase affect polyphosphate (PolyP) distribution
Alexandr A. Tomashevski & Valery V. Petrov
Pages: 123-124
Published online: 29 May 2013
Abstractfor191 Point mutations in the yeast Pma1 H+-ATPase affect polyphosphate (PolyP) distribution | Full Text | References | PDF (90 KB)
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Abstract
192 Computer-aided search for novel anti-HIV-1 agents presenting peptidomimetics of broadly neutralizing antibodies against the virus envelope GP120 V3 loop
Alexander M. Andrianov, Ivan A. Kashyn & Alexander V. Tuzikov
Pages: 124-125
Published online: 29 May 2013
Abstractfor192 Computer-aided search for novel anti-HIV-1 agents presenting peptidomimetics of broadly neutralizing antibodies against the virus envelope GP120 V3 loop | Full Text | References | PDF (135 KB)
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Abstract
193 Computer-aided design of novel HIV-1 entry inhibitors based on glycosphingolipids
Alexander M. Andrianov, Yuri V. Kornoushenko, Ivan A. Kashyn & Alexander V. Tuzikov
Page: 126
Published online: 29 May 2013
Abstractfor193 Computer-aided design of novel HIV-1 entry inhibitors based on glycosphingolipids | References | PDF (51.5 KB)
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Abstract
194 Energetics and dynamics of adenine protonation in HIV-1’s dimerization initiation site
Timothy J. Robbins, Nicole A. Whitakera & Yongmei Wang
Pages: 126-127
Published online: 29 May 2013
Abstractfor194 Energetics and dynamics of adenine protonation in HIV-1’s dimerization initiation site | Full Text | References | PDF (62.5 KB)
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Abstract
195 In silico study on HIV-PRIs substructures to terminate proteolytic activity in HTLV
Poonam Singh, Sanjeev Kumar Singh, Chandrabose Selvaraj & Rama Kant Singh
Page: 127
Published online: 29 May 2013
Abstractfor195 In silico study on HIV-PRIs substructures to terminate proteolytic activity in HTLV | References | PDF (52.8 KB)
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Abstract
196 Mechanisms of viral dsRNA detection and antiviral signal activation by MDA5 filament
Bin Wu, Alys Peisley & Sun Hur
Pages: 127-128
Published online: 29 May 2013
Abstractfor196 Mechanisms of viral dsRNA detection and antiviral signal activation by MDA5 filament | References | PDF (96.8 KB)
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Abstract
197 Modeling the maturation pathway of the HIV-1 5’-UTR RNA dimer
Nikolai B. Ulyanov, Christophe Guilbert, Richard Tjhen & Thomas L. James
Pages: 128-129
Published online: 29 May 2013
Abstractfor197 Modeling the maturation pathway of the HIV-1 5’-UTR RNA dimer | Full Text | References | PDF (124.8 KB)
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Abstract
198 MS-based approaches for the structural determination of retroviral ribonucleoproteins
Dan Fabris, Matteo Scalabrin, Papa Nii Asare-Okai, Maria Basanta-Sanchez & Jennifer Lippens
Pages: 129-130
Published online: 29 May 2013
Abstractfor198 MS-based approaches for the structural determination of retroviral ribonucleoproteins | Full Text | PDF (137.8 KB)
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Abstract
199 Network analysis of inhibition and resistance mechanisms in viral polymerases
Ashutosh Srivastava & Somdatta Sinha
Page: 130
Published online: 29 May 2013
Abstractfor199 Network analysis of inhibition and resistance mechanisms in viral polymerases | Full Text | References | PDF (98.7 KB)
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Abstract
200 Potent inhibition of HIV replication by RNA-binding peptide mimetics with unprecedented specificity
Gabriele Varani
Page: 131
Published online: 29 May 2013
Abstractfor200 Potent inhibition of HIV replication by RNA-binding peptide mimetics with unprecedented specificity | References | PDF (70.6 KB)
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Abstract
201 The ESCRT pathway in HIV budding and cell division
Wesley I. Sundquist
Page: 131
Published online: 29 May 2013
Abstractfor201 The ESCRT pathway in HIV budding and cell division | PDF (70.6 KB)
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Abstract
202 Structural aspects of the infection cycles of giant viruses
Abraham Minsky & Yael Mutsafi
Page: 132
Published online: 29 May 2013
Abstractfor202 Structural aspects of the infection cycles of giant viruses | References | PDF (74.2 KB)
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Abstract
203 Polymers through pores: single-molecule experiments with nucleic acids, polypeptides and polysaccharides
Hagan Bayley
Pages: 132-133
Published online: 29 May 2013
Abstractfor203 Polymers through pores: single-molecule experiments with nucleic acids, polypeptides and polysaccharides | References | PDF (123.2 KB)
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Abstract
204 Polymer translocation
Murugappan Muthukumar
Page: 133
Published online: 29 May 2013
Abstractfor204 Polymer translocation | References | PDF (88.1 KB)
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Abstract
205 Ultrathin nanopores for structural analysis of small nucleic acids
Meni Wanunu
Pages: 133-134
Published online: 29 May 2013
Abstractfor205 Ultrathin nanopores for structural analysis of small nucleic acids | Full Text | References | PDF (115.7 KB)
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Abstract
206 An artificial active DNA transporter from biological building blocks
Lorenzo Franceschini, Misha Soskine & Giovanni Maglia
Page: 134
Published online: 29 May 2013
Abstractfor206 An artificial active DNA transporter from biological building blocks | Full Text | PDF (67 KB)
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Abstract
207 Nanopore immobilization of DNA polymerase enhances single-molecule sequencing
Joseph Larkin, Matieu Foquet, Jonas Korlach & Meni Wanunu
Pages: 134-135
Published online: 29 May 2013
Abstractfor207 Nanopore immobilization of DNA polymerase enhances single-molecule sequencing | References | PDF (110.9 KB)
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Abstract
208 Electrophoresis and capture of DNA into a nanopore
Alexander Y. Grosberg
Pages: 135-136
Published online: 29 May 2013
Abstractfor208 Electrophoresis and capture of DNA into a nanopore | Full Text | References | PDF (92.9 KB)
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Abstract
209 Designing stiff protein nanopores for challenging tasks in biosensing
L. Movileanu
Page: 136
Published online: 29 May 2013
Abstractfor209 Designing stiff protein nanopores for challenging tasks in biosensing | Full Text | References | PDF (49 KB)
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Abstract
210 Computational study of substrates and mediators features of lacasses
Azar Delavari & Juan J. Perez
Pages: 136-137
Published online: 29 May 2013
Abstractfor210 Computational study of substrates and mediators features of lacasses | Full Text | References | PDF (105.6 KB)
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Abstract
211 Synthesis of informational polymers by guided polymerization reactions in liquid crystalline matrices of lipids
Chaitanya Mungi & Sudha Rajamani
Pages: 137-138
Published online: 29 May 2013
Abstractfor211 Synthesis of informational polymers by guided polymerization reactions in liquid crystalline matrices of lipids | Full Text | References | PDF (346.1 KB)
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Abstract
212 Shifting interfaces: changes in protein–protein and protein–DNA interfaces probed via molecular dynamics
Lacra Negureanu & Freddie Salsbury Jr.
Pages: 138-139
Published online: 29 May 2013
Abstractfor212 Shifting interfaces: changes in protein–protein and protein–DNA interfaces probed via molecular dynamics | Full Text | References | PDF (289.8 KB)
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Abstract
213 Structures and interactions of proteins involved in ER-associated protein degradation
Udo Heinemann, Anup Arumughan, Jennifer Hanna, Yvette Roske, Anja Schütz & Erich E. Wanker
Page: 139
Published online: 29 May 2013
Abstractfor213 Structures and interactions of proteins involved in ER-associated protein degradation | Full Text | References | PDF (46.8 KB)
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