Journal of Biomolecular Structure and Dynamics, Volume 35, Issue 9 (2017)

Browse this journal
Sample our Bioscience journals, sign in here to start your access, Latest two full volumes FREE to you for 14 days

Journal of Biomolecular Structure and Dynamics, Volume 35, Issue 9 (2017)

See all volumes and issues
Vol 42, 2024 Vol 41, 2023 Vol 40, 2022 Vol 39, 2021 Vol 38, 2020 Vol 37, 2019 Vol 36, 2018 Volume 35, 2017 Vol 34, 2016 Vol 33, 2015 Vol 32, 2014 Vol 31, 2013 Vol 30, 2012 Vol 29, 2011-2012 Vol 28, 2010-2011 Vol 27, 2009-2010 Vol 26, 2008-2009 Vol 25, 2007-2008 Vol 24, 2006-2007 Vol 23, 2005-2006 Vol 22, 2004-2005 Vol 21, 2003-2004 Vol 20, 2002-2003 Vol 19, 2001-2002 Vol 18, 2000-2001 Vol 17, 1999-2000 Vol 16, 1998-1999 Vol 15, 1997-1998 Vol 14, 1996-1997 Vol 13, 1995-1996 Vol 12, 1994-1995 Vol 11, 1993-1994 Vol 10, 1992-1993 Vol 9, 1991-1992 Vol 8, 1990-1991 Vol 7, 1989-1990 Vol 6, 1988-1989 Vol 5, 1987-1988 Vol 4, 1986-1987 Vol 3, 1985-1986 Vol 2, 1984-1985 Vol 1, 1983-1984
Download citations Download PDFs Download issue

Research Articles

Article
Effects of mutants in bHLH region on structure stability and protein-DNA binding energy in DECs
Yi Kong, Zhen Wang, Yanfei Jia, Ping Li, Shuhua Hao & Yunshan Wang
Pages: 1849-1862
Published online: 07 Aug 2016
AbstractforEffects of mutants in bHLH region on structure stability and protein-DNA binding energy in DECs | Full Text | References | PDF (1.4 MB) | Supplemental
  • 156 Views
  • 4 CrossRef citations
  • 0Altmetric

Review Article

Review Article
Genome-scale metabolic models as platforms for strain design and biological discovery
Bashir Sajo Mienda
Pages: 1863-1873
Published online: 30 Jun 2016
AbstractforGenome-scale metabolic models as platforms for strain design and biological discovery | Full Text | References | PDF (374 KB)
  • 334 Views
  • 15 CrossRef citations
  • 0Altmetric

Research Articles

Article
In silico and in vivo stability analysis of a heterologous biosynthetic pathway for 1,4-butanediol production in metabolically engineered E. coli
Ildikó Miklóssy, Zsolt Bodor, Réka Sinkler, Kálmán Csongor Orbán, Szabolcs Lányi & Beáta Albert
Pages: 1874-1889
Published online: 05 Aug 2016
AbstractforIn silico and in vivo stability analysis of a heterologous biosynthetic pathway for 1,4-butanediol production in metabolically engineered E. coli | Full Text | References | PDF (932.5 KB) | Supplemental
  • 454 Views
  • 6 CrossRef citations
  • 0Altmetric
Article
Molecular docking and CoMFA studies of thiazoloquin(az)olin(on)es as CD38 inhibitors: determination of inhibitory mechanism, pharmacophore interactions, and design of new inhibitors
Bakhtyar Sepehri & Raouf Ghavami
Pages: 1890-1898
Published online: 26 Sep 2016
AbstractforMolecular docking and CoMFA studies of thiazoloquin(az)olin(on)es as CD38 inhibitors: determination of inhibitory mechanism, pharmacophore interactions, and design of new inhibitors | Full Text | References | PDF (583.4 KB) | Supplemental
  • 170 Views
  • 5 CrossRef citations
  • 0Altmetric
Article
Virtual screening of small molecules databases for discovery of novel PARP-1 inhibitors: combination of in silico and in vitro studies
Ramin Ekhteiari Salmas, Ayhan Unlu, Muhammet Bektaş, Mine Yurtsever, Mert Mestanoglu & Serdar Durdagi
Pages: 1899-1915
Published online: 17 Jul 2016
AbstractforVirtual screening of small molecules databases for discovery of novel PARP-1 inhibitors: combination of in silico and in vitro studies | Full Text | References | PDF (1.8 MB) | Supplemental
  • 827 Views
  • 16 CrossRef citations
  • 0Altmetric
Article
Impact of disease-causing mutations on inter-domain interactions in cMyBP-C: a steered molecular dynamics study
Navaneethakrishnan Krishnamoorthy, Poornima Gajendrarao, Iacopo Olivotto & Magdi Yacoub
Pages: 1916-1922
Published online: 30 Jun 2016
AbstractforImpact of disease-causing mutations on inter-domain interactions in cMyBP-C: a steered molecular dynamics study | Full Text | References | PDF (505.2 KB)
  • 249 Views
  • 14 CrossRef citations
  • 0Altmetric
Article
Scrutiny of chain-length and N-terminal effects in α-helix folding: a molecular dynamics study on polyalanine peptides
Bhupesh Goyal, Anil Kumar, Kinshuk Raj Srivastava & Susheel Durani
Pages: 1923-1935
Published online: 06 Jul 2016
AbstractforScrutiny of chain-length and N-terminal effects in α-helix folding: a molecular dynamics study on polyalanine peptides | Full Text | References | PDF (673.7 KB)
  • 255 Views
  • 8 CrossRef citations
  • 0Altmetric
Article
Isolation and characterization of bioactive compounds of Clematis gouriana Roxb. ex DC against snake venom phospholipase A2 (PLA2) computational and in vitro insights
Karthikeyan Muthusamy, Sathishkumar Chinnasamy, Subbiah Nagarajan, Thirunavukkarasu Sivaraman & Selvakumar Chinnasamy
Pages: 1936-1949
Published online: 28 Sep 2016
AbstractforIsolation and characterization of bioactive compounds of Clematis gouriana Roxb. ex DC against snake venom phospholipase A2 (PLA2) computational and in vitro insights | Full Text | References | PDF (712 KB) | Supplemental
  • 178 Views
  • 11 CrossRef citations
  • 0Altmetric
Article
In silico studies on potential MCF-7 inhibitors: a combination of pharmacophore and 3D-QSAR modeling, virtual screening, molecular docking, and pharmacokinetic analysis
Bharti Badhani & Rita Kakkar
Pages: 1950-1967
Published online: 12 Jul 2016
AbstractforIn silico studies on potential MCF-7 inhibitors: a combination of pharmacophore and 3D-QSAR modeling, virtual screening, molecular docking, and pharmacokinetic analysis | Full Text | References | PDF (1.4 MB) | Supplemental
  • 330 Views
  • 22 CrossRef citations
  • 0Altmetric
Article
The interaction of beta-lactoglobulin with ciprofloxacin and kanamycin; a spectroscopic and molecular modeling approach
Mohammad Hossein Mehraban, Salman Odooli, Reza Yousefi, Rasoul Roghanian, Majid Motovali-Bashi, Ali-Akbar Moosavi-Movahedi & Younes Ghasemi
Pages: 1968-1978
Published online: 19 Sep 2016
AbstractforThe interaction of beta-lactoglobulin with ciprofloxacin and kanamycin; a spectroscopic and molecular modeling approach | Full Text | References | PDF (562.6 KB) | Supplemental
  • 222 Views
  • 16 CrossRef citations
  • 0Altmetric
Article
Viper venom hyaluronidase and its potential inhibitor analysis: a multipronged computational investigation
V. Sivaramakrishnan, M. Ilamathi, K.S. Girish, K. Kemparaju, K.S. Rangappa & Bhadrapura Lakkappa Dhananjaya
Pages: 1979-1989
Published online: 11 Jul 2016
AbstractforViper venom hyaluronidase and its potential inhibitor analysis: a multipronged computational investigation | Full Text | References | PDF (1.3 MB) | Supplemental
  • 153 Views
  • 4 CrossRef citations
  • 0Altmetric
Article
Molecular dynamics simulations of cellulase homologs in aqueous 1-ethyl-3-methylimidazolium chloride
Lucas B. Johnson & Christopher D. Snow
Pages: 1990-2002
Published online: 08 Jul 2016
AbstractforMolecular dynamics simulations of cellulase homologs in aqueous 1-ethyl-3-methylimidazolium chloride | Full Text | References | PDF (1 MB) | Supplemental
  • 363 Views
  • 10 CrossRef citations
  • 0Altmetric
Article
Molecular modeling study for the design of novel acetyl-CoA carboxylase inhibitors using 3D QSAR, molecular docking and dynamic simulations
Vivek K. Vyas, Mohini Dabasia, Gulamnizami Qureshi, Palak Patel & Manjunath Ghate
Pages: 2003-2015
Published online: 12 Jul 2016
AbstractforMolecular modeling study for the design of novel acetyl-CoA carboxylase inhibitors using 3D QSAR, molecular docking and dynamic simulations | Full Text | References | PDF (724.3 KB) | Supplemental
  • 291 Views
  • 6 CrossRef citations
  • 0Altmetric
Article
Effect of 1-methyl-3-octyleimmidazolium chloride on the stability and activity of lysozyme: a spectroscopic and molecular dynamics studies
Meena Kumari, Neeraj Dohare, Neha Maurya, Ravins Dohare & Rajan Patel
Pages: 2016-2030
Published online: 05 Aug 2016
AbstractforEffect of 1-methyl-3-octyleimmidazolium chloride on the stability and activity of lysozyme: a spectroscopic and molecular dynamics studies | Full Text | References | PDF (1.4 MB) | Supplemental
  • 383 Views
  • 55 CrossRef citations
  • 0Altmetric

Letter to the editor

Letter
Characterization of a putative ArsR transcriptional regulator encoded by Rv2642 from Mycobacterium tuberculosis
Qiming Li, Chunyan Li, Longxiang Xie, Chenhui Zhang, Yonghong Feng & Jianping Xie
Pages: 2031-2039
Published online: 05 Aug 2016
First Page PreviewforCharacterization of a putative ArsR transcriptional regulator encoded by Rv2642 from Mycobacterium tuberculosis | Full Text | References | PDF (614.1 KB) | Supplemental
  • 322 Views
  • 8 CrossRef citations
  • 0Altmetric

Research Articles

Article
The signaling pathway of dopamine D2 receptor (D2R) activation using normal mode analysis (NMA) and the construction of pharmacophore models for D2R ligands
Ramin Ekhteiari Salmas, Matthias Stein, Mine Yurtsever, Philip Seeman, Ismail Erol, Mert Mestanoglu & Serdar Durdagi
Pages: 2040-2048
Published online: 27 Jul 2016
AbstractforThe signaling pathway of dopamine D2 receptor (D2R) activation using normal mode analysis (NMA) and the construction of pharmacophore models for D2R ligands | Full Text | References | PDF (584.1 KB) | Supplemental
  • 373 Views
  • 11 CrossRef citations
  • 0Altmetric

LETTER TO THE EDITOR

Letter
Synthesis and characterization of luminescent indole-based europium complex for selective sensing of ATP
Sneha Wankar, Aarti Saxena, Umar J. Pandit, Imran Khan, Ratnesh Das & Sudhir N. Limaye
Pages: 2049-2054
Published online: 22 Jul 2016
First Page PreviewforSynthesis and characterization of luminescent indole-based europium complex for selective sensing of ATP | Full Text | References | PDF (505.2 KB) | Supplemental
  • 150 Views
  • 1 CrossRef citations
  • 0Altmetric

Research Articles

Article
Synthesis and crystal structures of cobalt(II), cadmium(II), and zinc(II) complexes of 4-nitro phenylcyanamide: enhancing the biological properties through bound to human serum albumin
Mehdi Jazestani, Hossein Chiniforoshan, Leila Tabrizi & Patrick McArdle
Pages: 2055-2065
Published online: 16 Aug 2016
AbstractforSynthesis and crystal structures of cobalt(II), cadmium(II), and zinc(II) complexes of 4-nitro phenylcyanamide: enhancing the biological properties through bound to human serum albumin | Full Text | References | PDF (641.5 KB) | Supplemental
  • 160 Views
  • 11 CrossRef citations
  • 0Altmetric
Article
Effect of peroxynitrite on human serum albumin: a multi technique approach
Zarina Arif, Mir Yasir Arfat, Km Neelofar, Shafeeque Ahmad, Asim Badar, Md Adnan Khan, Asif Zaman & Jamal Ahmad
Pages: 2066-2076
Published online: 28 Jul 2016
AbstractforEffect of peroxynitrite on human serum albumin: a multi technique approach | Full Text | References | PDF (589.4 KB)
  • 212 Views
  • 5 CrossRef citations
  • 0Altmetric

Explore articles