Journal of Biomolecular Structure and Dynamics, Volume 25, Issue 6 (2008)

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Journal of Biomolecular Structure and Dynamics, Volume 25, Issue 6 (2008)

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Original Articles

Article
Molecular Dynamics Simulations of Rhodopsin Point Mutants at the Cytoplasmic Side of Helices 3 and 6
Arnau Cordomí, Eva Ramon, Pere Garriga & Juan J. Perez
Pages: 573-587
Published online: 15 May 2012
AbstractforMolecular Dynamics Simulations of Rhodopsin Point Mutants at the Cytoplasmic Side of Helices 3 and 6 | References | PDF (2.7 MB)
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Article
Structural Complexes of Human Adenine Phosphoribosyltransferase Reveal Novel Features of the APRT Catalytic Mechanism
Carlos H. T. P. Silva, Marcio Silva, Jorge Iulek & Otavio H. Thiemann
Pages: 589-597
Published online: 15 May 2012
AbstractforStructural Complexes of Human Adenine Phosphoribosyltransferase Reveal Novel Features of the APRT Catalytic Mechanism | Full Text | References | PDF (1.5 MB)
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Article
Accurate Aqueous Proton Dissociation Constants Calculations for Selected Angiotensin-Converting Enzyme Inhibitors
Martin Sramko, Martin Smiesko & Milan Remko
Pages: 599-608
Published online: 15 May 2012
AbstractforAccurate Aqueous Proton Dissociation Constants Calculations for Selected Angiotensin-Converting Enzyme Inhibitors | References | PDF (562.9 KB)
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Article
Study of Multiple Unfolding Trajectories and Unfolded States of the Protein GB1 Under the Physical Property Space
Jihua Wang, Liling Zhao, Xianghua Dou & Zhiyong Zhang
Pages: 609-619
Published online: 15 May 2012
AbstractforStudy of Multiple Unfolding Trajectories and Unfolded States of the Protein GB1 Under the Physical Property Space | References | PDF (2.8 MB)
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Article
Condensed Representations of Protein Secondary Structure Sequences and Their Application
Jie Feng & Tian-ming Wang
Pages: 621-628
Published online: 15 May 2012
AbstractforCondensed Representations of Protein Secondary Structure Sequences and Their Application | References | PDF (478 KB)
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Article
SNP Detection for Cytochrome P450 Alleles by Target-assembled Tandem Oligonucleotide Systems Based on Exciplexes
Lindsey Walsh, Abdul Gbaj, Laura L. Etchells, Kenneth T. Douglas & Elena V. Bichenkova
Pages: 629-640
Published online: 15 May 2012
AbstractforSNP Detection for Cytochrome P450 Alleles by Target-assembled Tandem Oligonucleotide Systems Based on Exciplexes | Full Text | References | PDF (584.6 KB)
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Article
Influence of Ionic Strength on Hoechst 33258 Binding with DNA
Poghos O. Vardevanyan, Ara P. Antonyan, Marine A. Parsadanyan, Kristine V. Pirumyan, Andranik M. Muradyan & Armen T. Karapetian
Pages: 641-646
Published online: 15 May 2012
AbstractforInfluence of Ionic Strength on Hoechst 33258 Binding with DNA | References | PDF (474.8 KB)
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Article
Excessive Clustering of Third Codon Position Pyrimidines in Prokaryotes
Alexandra E. Rapoport & Edward N. Trifonov
Pages: 647-653
Published online: 15 May 2012
AbstractforExcessive Clustering of Third Codon Position Pyrimidines in Prokaryotes | References | PDF (587.8 KB)
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Article
Delving Deeper into the Unexpected Correlation Between Gene Expressivity and Codon Usage Bias of Escherichia coli Genome
Bratati Kahali, Surajit Basak & Tapash Chandra Ghosh
Pages: 655-661
Published online: 15 May 2012
AbstractforDelving Deeper into the Unexpected Correlation Between Gene Expressivity and Codon Usage Bias of Escherichia coli Genome | References | PDF (309.3 KB)
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Article
2-Aminopurine Fluorescence: Discrimination Between Specific and Unspecific Ligand Binding to the Kissing-Loop Dimer of the HIV-1 RNA
Dmitry N. Kaluzhny, Artemy D. Beniaminov & Elvira E. Minyat
Pages: 663-667
Published online: 15 May 2012
Abstractfor2-Aminopurine Fluorescence: Discrimination Between Specific and Unspecific Ligand Binding to the Kissing-Loop Dimer of the HIV-1 RNA | Full Text | References | PDF (362.4 KB)
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Article
RNA2D3D: A program for Generating, Viewing, and Comparing 3-Dimensional Models of RNA
Hugo M. Martinez, Jacob V. Maizel Jr & Bruce A. Shapiro
Pages: 669-683
Published online: 24 Jul 2012
AbstractforRNA2D3D: A program for Generating, Viewing, and Comparing 3-Dimensional Models of RNA | References | PDF (6 MB)
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Open Access
Article
Fuzzy Kernel Clustering of RNA Secondary Structure Ensemble Using a Novel Similarity Metric
Qi Liu, Yin Zhang, Ying Xu & Xiuzi Ye
Pages: 685-696
Published online: 15 May 2012
AbstractforFuzzy Kernel Clustering of RNA Secondary Structure Ensemble Using a Novel Similarity Metric | References | PDF (802.9 KB)
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Article
Quantum Molecular Modeling of Glycyl-Adenylate
Martine Adrian-Scotto & Dan Vasilescu
Pages: 697-708
Published online: 15 May 2012
AbstractforQuantum Molecular Modeling of Glycyl-Adenylate | Full Text | References | PDF (3.9 MB)
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Article
Quantum Chemical Studies of Structures and Binding in Noncanonical RNA Base pairs: The Trans Watson-Crick:Watson-Crick Family
Purshotam Sharma, Abhijit Mitra, Sitansh Sharma, Harjinder Singh & Dhananjay Bhattacharyya
Pages: 709-732
Published online: 15 May 2012
AbstractforQuantum Chemical Studies of Structures and Binding in Noncanonical RNA Base pairs: The Trans Watson-Crick:Watson-Crick Family | References | PDF (3 MB)
  • 86 Views
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Article
Studies on Tautomeric Forms of Guanine-Cytosine Base Pairs of Nucleic Acids and Their Interactions with Water Molecules
P. Deepa & P. Kolandaivel
Pages: 733-746
Published online: 15 May 2012
AbstractforStudies on Tautomeric Forms of Guanine-Cytosine Base Pairs of Nucleic Acids and Their Interactions with Water Molecules | References | PDF (1.9 MB)
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