Journal of Biomolecular Structure and Dynamics, Volume 29, Issue 2 (2011)

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Journal of Biomolecular Structure and Dynamics, Volume 29, Issue 2 (2011)

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In Memoriam

Jon Widom—A Friend of JBSD and the Albany Conversation
Ramaswamy H. Sarma
Pages: 251-252
Published online: 11 Jul 2012
CitationforJon Widom—A Friend of JBSD and the Albany Conversation | References | PDF (83.3 KB)
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A Renaissance Man: In Memoriam of Jon Widom (1955–2011)
Sergei M. Mirkin
Pages: 253-255
Published online: 11 Jul 2012
First Page PreviewforA Renaissance Man: In Memoriam of Jon Widom (1955–2011) | PDF (162.6 KB)
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Jon Widom, the Scientist
Edward N. Trifonov & Victor B. Zhurkin
Pages: 257-258
Published online: 11 Jul 2012
CitationforJon Widom, the Scientist | References | PDF (70.5 KB)
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Original Articles

Article
Vocabulary of Definitions of Life Suggests a Definition
Edward N. Trifonov
Pages: 259-266
Published online: 11 Jul 2012
AbstractforVocabulary of Definitions of Life Suggests a Definition | References | PDF (235.7 KB)
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Open Access
Article
Terpyridine Platinum(II) Complexes Inhibit Cysteine Proteases by Binding to Active-site Cysteine
Yan-Chung Lo, Wen-Chi Su, Tzu-Ping Ko, Nai-Chen Wang & Andrew H.-J. Wang
Pages: 267-282
Published online: 11 Jul 2012
AbstractforTerpyridine Platinum(II) Complexes Inhibit Cysteine Proteases by Binding to Active-site Cysteine | Full Text | References | PDF (4.7 MB)
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Open Access
Article
Biological Evaluation and Interaction of a Newly Designed Anti-cancer Pd(II) Complex and Human Serum Albumin
Adeleh Divsalar, Ali Akbar Saboury, Leila Ahadi, Elham Zemanatiyar, Hassan Mansouri-Torshizi, Davood Ajloo & Ramaswamy H. Sarma
Pages: 283-296
Published online: 15 May 2012
AbstractforBiological Evaluation and Interaction of a Newly Designed Anti-cancer Pd(II) Complex and Human Serum Albumin | Full Text | References | PDF (1.3 MB)
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Article
Molecular Modeling and Molecular Dynamics Simulation Studies of Delta-Notch Complex
Riddhi Majumder, Sujata Roy & Ashoke Ranjan Thakur
Pages: 297-310
Published online: 15 May 2012
AbstractforMolecular Modeling and Molecular Dynamics Simulation Studies of Delta-Notch Complex | References | PDF (2.3 MB)
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Article
Insight into the Inhibitory Mechanism and Binding Mode Between D77 and HIV-1 Integrase by Molecular Modeling Methods
Ping Li, Jian Jun Tan, Ming Liu, Xiao Yi Zhang, Wei Zu Chen & Cun Xin Wang
Pages: 311-323
Published online: 15 May 2012
AbstractforInsight into the Inhibitory Mechanism and Binding Mode Between D77 and HIV-1 Integrase by Molecular Modeling Methods | References | PDF (4.5 MB)
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Article
Search for Novel Remedies to Augment Radiation Resistance of Inhabitants of Fukushima and Chernobyl Disasters: Identifying DNA Repair Protein XRCC4 Inhibitors
Mao-Feng Sun, Hsin-Yi Chen, Fuu-Jen Tsai, Shu-Hui Liu, Chih-Yi Chen & Calvin Yu-Chian Chen
Pages: 325-337
Published online: 15 May 2012
AbstractforSearch for Novel Remedies to Augment Radiation Resistance of Inhabitants of Fukushima and Chernobyl Disasters: Identifying DNA Repair Protein XRCC4 Inhibitors | References | PDF (2.1 MB)
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Article
Energetics of Hydrogen Bond Switch, Residue Burial and Cavity Analysis Reveals Molecular Basis of Improved Heparin Binding to Antithrombin
Poonam Singh, Khushboo Singh & Mohamad Aman Jairajpuri
Pages: 339-350
Published online: 15 May 2012
AbstractforEnergetics of Hydrogen Bond Switch, Residue Burial and Cavity Analysis Reveals Molecular Basis of Improved Heparin Binding to Antithrombin | References | PDF (2.3 MB)
  • 338 Views
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Article
Molecular Modeling Studies of Yersinia pestis Dihydrofolate Reductase
Aline A. Oliveira, Magdalena N. Rennó, César A. S. de Matos, Morena D. Bertuzzi, Teodorico C. Ramalho, Carlos A.M. Fraga & Tanos C. C. França
Pages: 351-367
Published online: 15 May 2012
AbstractforMolecular Modeling Studies of Yersinia pestis Dihydrofolate Reductase | References | PDF (3.4 MB)
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Article
The Structural Stability of Wild-type Horse Prion Protein
Jiapu Zhang
Pages: 369-377
Published online: 15 May 2012
AbstractforThe Structural Stability of Wild-type Horse Prion Protein | Full Text | References | PDF (5.2 MB)
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Article
Prevalent Mutations of Human Prion Protein: A Molecular Modeling and Molecular Dynamics Study
Esmaeil Behmard, Parviz Abdolmaleki, Ebrahim Barzegari Asadabadi & Samad Jahandideh
Pages: 379-389
Published online: 15 May 2012
AbstractforPrevalent Mutations of Human Prion Protein: A Molecular Modeling and Molecular Dynamics Study | References | PDF (3.1 MB)
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Article
Gene Re-annotation in Genome of the Extremophile Pyrobaculum Aerophilum by Using Bioinformatics Methods
Meng-Ze Du, Feng-Biao Guo & Yue-Yun Chen
Pages: 391-401
Published online: 15 May 2012
AbstractforGene Re-annotation in Genome of the Extremophile Pyrobaculum Aerophilum by Using Bioinformatics Methods | References | PDF (478.9 KB)
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Article
Role of Ligand Binding in Structural Organization of Add A-riboswitch Aptamer: A Molecular Dynamics Simulation
Zhou Gong, Yunjie Zhao, Changjun Chen & Yi Xiao
Pages: 403-416
Published online: 15 May 2012
AbstractforRole of Ligand Binding in Structural Organization of Add A-riboswitch Aptamer: A Molecular Dynamics Simulation | References | PDF (2.5 MB)
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News Letter on Xml Based Webserver

OnionTree XML: A Format to Exchange Gene-Related Probabilities
Alexander Favorov, Dmitrijs Lvovs, William Speier, Giovanni Parmigiani & Michael F. Ochs
Pages: 417-423
Published online: 11 Jul 2012
First Page PreviewforOnionTree XML: A Format to Exchange Gene-Related Probabilities | References | PDF (442 KB)
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