Epigenetics, Volume 17, Issue 12 (2022)

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Epigenetics, Volume 17, Issue 12 (2022)

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Research Paper

Article
Sex-specific DNA methylation and associations with in utero tobacco smoke exposure at nuclear-encoded mitochondrial genes
Dillon E. King, Anna Clare Sparling, Dillon Lloyd, Matthew Joseph Satusky, Mackenzie Martinez, Carole Grenier, Christina Michelle Bergemann, Rachel Maguire, Cathrine Hoyo, Joel Newman Meyer & Susan K. Murphy
Pages: 1573-1589
Published online: 03 Mar 2022
AbstractforSex-specific DNA methylation and associations with in utero tobacco smoke exposure at nuclear-encoded mitochondrial genes | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 657 Views
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Article
An shRNA kinase screen identifies regulators of UHRF1 stability and activity in mouse embryonic stem cells
Michael D. Rushton, Emily A. Saunderson, Hemalvi Patani, Michael R. Green & Gabriella Ficz
Pages: 1590-1607
Published online: 24 Mar 2022
AbstractforAn shRNA kinase screen identifies regulators of UHRF1 stability and activity in mouse embryonic stem cells | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 2112 Views
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Open Access
Article
Permutation-based significance analysis reduces the type 1 error rate in bisulphite sequencing data analysis of human umbilical cord blood samples
Essi Laajala, Viivi Halla-aho, Toni Grönroos, Ubaid Ullah Kalim, Mari Vähä-Mäkilä, Mirja Nurmio, Henna Kallionpää, Niina Lietzén, Juha Mykkänen, Omid Rasool, Jorma Toppari, Matej Orešič, Mikael Knip, Riikka Lund, Riitta Lahesmaa & Harri Lähdesmäki
Pages: 1608-1627
Published online: 04 Mar 2022
AbstractforPermutation-based significance analysis reduces the type 1 error rate in bisulphite sequencing data analysis of human umbilical cord blood samples | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 1592 Views
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Open Access

Brief Report

Brief Report
Memory B-cell like chronic lymphocytic leukaemia is associated with specific methylation profile of WNT5A promoter and undetectable expression of WNT5A gene
Lucie Poppova, Sarka Pavlova, Beatriz Gonzalez, Jana Kotaskova, Karla Plevova, Gabrijela Dumbovic, Pavlina Janovska, Vojtech Bystry, Anna Panovska, Lucie Bezdekova, Stanislava Maslejova, Yvona Brychtova, Michael Doubek, Marcela Krzyzankova, Marek Borsky, Jiri Mayer, Vitezslav Bryja, Sergio Alonso & Sarka Pospisilova
Pages: 1628-1635
Published online: 25 Mar 2022
AbstractforMemory B-cell like chronic lymphocytic leukaemia is associated with specific methylation profile of WNT5A promoter and undetectable expression of WNT5A gene | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 1468 Views
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Research Paper

Article
Reproducibility of the Infinium methylationEPIC BeadChip assay using low DNA amounts
Steffan Noe Christiansen, Jeppe Dyrberg Andersen, Marie-Louise Kampmann, Jing Liu, Mikkel Meyer Andersen, Jacob Tfelt-Hansen & Niels Morling
Pages: 1636-1645
Published online: 31 Mar 2022
AbstractforReproducibility of the Infinium methylationEPIC BeadChip assay using low DNA amounts | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 2375 Views
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Open Access

Brief Report

Brief Report
DNA methylation profiles in pneumonia patients reflect changes in cell types and pneumonia severity
Marco Morselli, Colin Farrell, Dennis Montoya, Tarık Gören, Ramazan Sabırlı, İbrahim Türkçüer, Özgür Kurt, Aylin Köseler & Matteo Pellegrini
Pages: 1646-1660
Published online: 21 Mar 2022
AbstractforDNA methylation profiles in pneumonia patients reflect changes in cell types and pneumonia severity | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 678 Views
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Free Access

Review

Review Article
Methylation of tumour suppressor genes in benign and malignant salivary gland tumours: a systematic review and meta-analysis
Nadja Nikolic, Jelena Carkic, Jelena Jacimovic, Aleksandar Jakovljevic, Boban Anicic, Zoran Jezdic & Jelena Milasin
Pages: 1661-1676
Published online: 24 Mar 2022
AbstractforMethylation of tumour suppressor genes in benign and malignant salivary gland tumours: a systematic review and meta-analysis | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 509 Views
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Free Access

Brief Report

Brief Report
Validation of a DNA methylation microarray for 285,000 CpG sites in the mouse genome
Carlos A. Garcia-Prieto, Damiana Álvarez-Errico, Eva Musulen, Alberto Bueno-Costa, Berta N. Vazquez, Alejandro Vaquero & Manel Esteller
Pages: 1677-1685
Published online: 21 Mar 2022
AbstractforValidation of a DNA methylation microarray for 285,000 CpG sites in the mouse genome | Full Text | References | PDF (1.5 MB) | EPUB
  • 3394 Views
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Open Access

Research Paper

Article
CircRIMKLB promotes myoblast proliferation and inhibits differentiation by sponging miR-29c to release KCNJ12
Jian Wang, Yifan Wen, Jiawei Xu, Binglin Yue, Jialin Zhong, Li Zheng, Chuzhao Lei, Hong Chen & Yongzhen Huang
Pages: 1686-1700
Published online: 29 Mar 2022
AbstractforCircRIMKLB promotes myoblast proliferation and inhibits differentiation by sponging miR-29c to release KCNJ12 | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
  • 399 Views
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Article
Chimpanzee Extraversion scores vary with epigenetic modification of dopamine receptor gene D2 (DRD2) and early rearing conditions
Nicky Staes, Cassandra M. White, Elaine E Guevara, Marcel Eens, William D. Hopkins, Steven J. Schapiro, Jeroen M.G. Stevens, Chet C. Sherwood & Brenda J Bradley
Pages: 1701-1714
Published online: 28 Mar 2022
AbstractforChimpanzee Extraversion scores vary with epigenetic modification of dopamine receptor gene D2 (DRD2) and early rearing conditions | Full Text | References | PDF (997.1 KB) | EPUB | Supplemental
  • 640 Views
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Free Access
Article
Evaluation of methylated DCR1 as a biomarker for response to adjuvant irinotecan-based therapy in stage III colon cancer: cancer and leukaemia Group B 89803 (Alliance)
Lynn Symonds, Ming Yu, YuHong Zhang, Fang-Shu Ou, Tyler J. Zemla, Kelly Carter, Monica Bertagnolli, Federico Innocenti, Linda JW Bosch, Gerrit A Meijer, Beatriz Carvalho, William M. Grady & Stacey A. Cohen
Pages: 1715-1725
Published online: 12 Apr 2022
AbstractforEvaluation of methylated DCR1 as a biomarker for response to adjuvant irinotecan-based therapy in stage III colon cancer: cancer and leukaemia Group B 89803 (Alliance) | Full Text | References | PDF (962.9 KB) | EPUB
  • 538 Views
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Article
A plant-based diet differentially affects the global hepatic methylome in rainbow trout depending on genetic background
Marandel L, Heraud C, Véron V, Laithier J, Marchand M, Quillet E, Callet T, Dupont-Nivet M & Médale F
Pages: 1726-1737
Published online: 29 Mar 2022
AbstractforA plant-based diet differentially affects the global hepatic methylome in rainbow trout depending on genetic background | Full Text | References | PDF (1,004.4 KB) | EPUB | Supplemental
  • 276 Views
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Article
m6A RNA demethylase FTO promotes the growth, migration and invasion of pancreatic cancer cells through inhibiting TFPI-2
Wei Wang, Ying He, Lu-Lu Zhai, Long-Jiang Chen, Li-Chao Yao, Lun Wu, Zhi-Gang Tang & Jin-Zhuo Ning
Pages: 1738-1752
Published online: 11 Apr 2022
Abstractform6A RNA demethylase FTO promotes the growth, migration and invasion of pancreatic cancer cells through inhibiting TFPI-2 | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
  • 724 Views
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Research Article

Article
Large-scale integration of DNA methylation and gene expression array platforms identifies both cis and trans relationships
Eva E. Lancaster, Vladimir I. Vladimirov, Brien P. Riley, Joseph W. Landry, Roxann Roberson-Nay & Timothy P. York
Pages: 1753-1773
Published online: 13 Jun 2022
AbstractforLarge-scale integration of DNA methylation and gene expression array platforms identifies both cis and trans relationships | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
  • 1438 Views
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Open Access

Brief Communication

Brief Report
Epigenetic ageing of the prefrontal cortex and cerebellum in humans and chimpanzees
Elaine E. Guevara, William D. Hopkins, Patrick R. Hof, John J. Ely, Brenda J. Bradley & Chet C. Sherwood
Pages: 1774-1785
Published online: 02 Jun 2022
AbstractforEpigenetic ageing of the prefrontal cortex and cerebellum in humans and chimpanzees | Full Text | References | PDF (930.9 KB) | EPUB
  • 937 Views
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Research Paper

Article
ZNF582 promoter methylation predicts cervical cancer radiosensitivity and ZNF582 protein overexpression reduces radiosensitivity by cell cycle arrest in S phase
Nayiyuan Wu, Xiaoyun Zhang, Miaochen Zhu, Chao Fang, Xiaoting Liu, Ying Wang, He Li, Siye Liu, Hong Ting, Chongzhen Qin, Qianjin Liao, JingTing Cai & Jing Wang
Pages: 1786-1799
Published online: 09 Jun 2022
AbstractforZNF582 promoter methylation predicts cervical cancer radiosensitivity and ZNF582 protein overexpression reduces radiosensitivity by cell cycle arrest in S phase | Full Text | References | PDF (2.7 MB) | EPUB
  • 391 Views
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Article
Differential regulatory roles of microRNAs during intramuscular adipogenesis in Chinese Guizhou Congjiang Xiang pigs
Lulin Tan, Zhaojun Chen, Yong Ruan & Houqiang Xu
Pages: 1800-1819
Published online: 12 Jun 2022
AbstractforDifferential regulatory roles of microRNAs during intramuscular adipogenesis in Chinese Guizhou Congjiang Xiang pigs | Full Text | References | PDF (5.8 MB) | EPUB | Supplemental
  • 345 Views
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Article
Feminization of channel catfish with 17β-oestradiol involves methylation and expression of a specific set of genes independent of the sex determination region
Wenwen Wang, Suxu Tan, Yujia Yang, Tao Zhou, De Xing, Baofeng Su, Jinhai Wang, Shangjia Li, Mei Shang, Dongya Gao, Rex Dunham & Zhanjiang Liu
Pages: 1820-1837
Published online: 15 Jun 2022
AbstractforFeminization of channel catfish with 17β-oestradiol involves methylation and expression of a specific set of genes independent of the sex determination region | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 595 Views
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Article
Does genetic predisposition modify the effect of lifestyle-related factors on DNA methylation?
Chenglong Yu, Allison M Hodge, Ee Ming Wong, Jihoon E Joo, Enes Makalic, Daniel F Schmidt, Daniel D Buchanan, Gianluca Severi, John L Hopper, Dallas R English, Graham G Giles, Roger L Milne, Melissa C Southey & Pierre-Antoine Dugué
Pages: 1838-1847
Published online: 20 Jun 2022
AbstractforDoes genetic predisposition modify the effect of lifestyle-related factors on DNA methylation? | Full Text | References | PDF (439.2 KB) | EPUB | Supplemental
  • 404 Views
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