Autophagy, Volume 12, Issue 10 (2016)

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Autophagy, Volume 12, Issue 10 (2016)

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Editor's Corner

Editorial
Autophagy promotes cell motility by driving focal adhesion turnover
Ziheng Xu & Daniel J. Klionsky
Pages: 1685-1686
Published online: 30 Aug 2016
AbstractforAutophagy promotes cell motility by driving focal adhesion turnover | Full Text | References | PDF (238.3 KB)
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Basic Research Papers

Article
Upregulation of SQSTM1/p62 contributes to nickel-induced malignant transformation of human bronchial epithelial cells
Haishan Huang, Junlan Zhu, Yang Li, Liping Zhang, Jiayan Gu, Qipeng Xie, Honglei Jin, Xun Che, Jingxia Li, Chao Huang, Lung-Chi Chen, Jianxin Lyu, Jimin Gao & Chuanshu Huang
Pages: 1687-1703
Published online: 19 Aug 2016
AbstractforUpregulation of SQSTM1/p62 contributes to nickel-induced malignant transformation of human bronchial epithelial cells | Full Text | References | PDF (1.7 MB) | Supplemental
  • 3138 Views
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Open Access
Article
Wild-type rabies virus induces autophagy in human and mouse neuroblastoma cell lines
Jiaojiao Peng, Shenghe Zhu, Lili Hu, Pingping Ye, Yifei Wang, Qin Tian, Mingzhu Mei, Hao Chen & Xiaofeng Guo
Pages: 1704-1720
Published online: 27 Jul 2016
AbstractforWild-type rabies virus induces autophagy in human and mouse neuroblastoma cell lines | Full Text | References | PDF (2 MB)
  • 2082 Views
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Article
Autophagy in Saccharomyces cerevisiae requires the monomeric GTP-binding proteins, Arl1 and Ypt6
Shu Yang & Anne G. Rosenwald
Pages: 1721-1737
Published online: 27 Jul 2016
AbstractforAutophagy in Saccharomyces cerevisiae requires the monomeric GTP-binding proteins, Arl1 and Ypt6 | Full Text | References | PDF (1.8 MB) | Supplemental
  • 2500 Views
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Article
Absence of autophagy promotes apoptosis by modulating the ROS-dependent RLR signaling pathway in classical swine fever virus-infected cells
Jingjing Pei, Jieru Deng, Zuodong Ye, Jiaying Wang, Hongchao Gou, Wenjun Liu, Mingqiu Zhao, Ming Liao, Lin Yi & Jinding Chen
Pages: 1738-1758
Published online: 27 Jul 2016
AbstractforAbsence of autophagy promotes apoptosis by modulating the ROS-dependent RLR signaling pathway in classical swine fever virus-infected cells | Full Text | References | PDF (2.4 MB)
  • 2491 Views
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Article
TBC1D20 mediates autophagy as a key regulator of autophagosome maturation
D. J. Sidjanin, Anna K. Park, Adam Ronchetti, Jamaria Martins & William T. Jackson
Pages: 1759-1775
Published online: 03 Aug 2016
AbstractforTBC1D20 mediates autophagy as a key regulator of autophagosome maturation | Full Text | References | PDF (1.8 MB) | Supplemental
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Article
Metastatic risk and resistance to BRAF inhibitors in melanoma defined by selective allelic loss of ATG5
María García-Fernández, Panagiotis Karras, Agnieszka Checinska, Estela Cañón, Guadalupe T. Calvo, Gonzalo Gómez-López, Metehan Cifdaloz, Angel Colmenar, Luis Espinosa-Hevia, David Olmeda & María S. Soengas
Pages: 1776-1790
Published online: 27 Jul 2016
AbstractforMetastatic risk and resistance to BRAF inhibitors in melanoma defined by selective allelic loss of ATG5 | Full Text | References | PDF (2 MB) | Supplemental
  • 2304 Views
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Article
Role for DUSP1 (dual-specificity protein phosphatase 1) in the regulation of autophagy
Juan Wang, Jun-Ying Zhou, Dhonghyo Kho, John J. Reiners Jr. & Gen Sheng Wu
Pages: 1791-1803
Published online: 22 Aug 2016
AbstractforRole for DUSP1 (dual-specificity protein phosphatase 1) in the regulation of autophagy | Full Text | References | PDF (1.3 MB)
  • 2997 Views
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Article
Activation of autophagy by FOXO3 regulates redox homeostasis during osteogenic differentiation
M. C. Gómez-Puerto, L. P. Verhagen, A. K. Braat, E. W.-F. Lam, P. J. Coffer & M. J. Lorenowicz
Pages: 1804-1816
Published online: 14 Sep 2016
AbstractforActivation of autophagy by FOXO3 regulates redox homeostasis during osteogenic differentiation | Full Text | References | PDF (1.2 MB) | Supplemental
  • 3127 Views
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Open Access
Article
MicroRNA expression profiling of Leishmania donovani-infected host cells uncovers the regulatory role of MIR30A-3p in host autophagy
Alok Kumar Singh, Rajeev Kumar Pandey, Chandrima Shaha & Rentala Madhubala
Pages: 1817-1831
Published online: 19 Aug 2016
AbstractforMicroRNA expression profiling of Leishmania donovani-infected host cells uncovers the regulatory role of MIR30A-3p in host autophagy | Full Text | References | PDF (1.8 MB) | Supplemental
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Article
TP53-dependent autophagy links the ATR-CHEK1 axis activation to proinflammatory VEGFA production in human bronchial epithelial cells exposed to fine particulate matter (PM2.5)
Xiuduan Xu, Hongli Wang, Shasha Liu, Chen Xing, Yang Liu, Aodengqimuge, Wei Zhou, Xiaoyan Yuan, Yongfu Ma, Meiru Hu, Yongliang Hu, Shuxian Zou, Ye Gu, Shuangqing Peng, Shengtao Yuan, Weiping Li, Yuanfang Ma & Lun Song
Pages: 1832-1848
Published online: 19 Aug 2016
AbstractforTP53-dependent autophagy links the ATR-CHEK1 axis activation to proinflammatory VEGFA production in human bronchial epithelial cells exposed to fine particulate matter (PM2.5) | Full Text | References | PDF (1.9 MB)
  • 3134 Views
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Article
Anti-aging treatments slow propagation of synucleinopathy by restoring lysosomal function
Dong-Kyu Kim, Hee-Sun Lim, Ichiro Kawasaki, Yhong-Hee Shim, Nishant N. Vaikath, Omar M. A. El-Agnaf, He-Jin Lee & Seung-Jae Lee
Pages: 1849-1863
Published online: 19 Aug 2016
AbstractforAnti-aging treatments slow propagation of synucleinopathy by restoring lysosomal function | Full Text | References | PDF (1.7 MB) | Supplemental
  • 2964 Views
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Article
Autophagy regulates cytoplasmic remodeling during cell reprogramming in a zebrafish model of muscle regeneration
Alfonso Saera-Vila, Phillip E. Kish, Ke'ale W. Louie, Steven J. Grzegorski, Daniel J. Klionsky & Alon Kahana
Pages: 1864-1875
Published online: 14 Sep 2016
AbstractforAutophagy regulates cytoplasmic remodeling during cell reprogramming in a zebrafish model of muscle regeneration | Full Text | References | PDF (1.6 MB) | Supplemental
  • 2857 Views
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Open Access
Article
Impaired autophagy in macrophages promotes inflammatory eye disease
Andrea Santeford, Luke A. Wiley, Sunmin Park, Sonya Bamba, Rei Nakamura, Abdelaziz Gdoura, Thomas A. Ferguson, P. Kumar Rao, Jun-Lin Guan, Tatsuya Saitoh, Shizuo Akira, Ramnik Xavier, Herbert W. Virgin & Rajendra S. Apte
Pages: 1876-1885
Published online: 19 Aug 2016
AbstractforImpaired autophagy in macrophages promotes inflammatory eye disease | Full Text | References | PDF (1.2 MB) | Supplemental
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Article
Intracellular Salmonella induces aggrephagy of host endomembranes in persistent infections
Noelia López-Montero, Estel Ramos-Marquès, Cristina Risco & Francisco García-del Portillo
Pages: 1886-1901
Published online: 19 Aug 2016
AbstractforIntracellular Salmonella induces aggrephagy of host endomembranes in persistent infections | Full Text | References | PDF (2 MB) | Supplemental
  • 2323 Views
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Article
Transcription factor NFE2L2/NRF2 is a regulator of macroautophagy genes
Marta Pajares, Natalia Jiménez-Moreno, Ángel J. García-Yagüe, Maribel Escoll, María L. de Ceballos, Fred Van Leuven, Alberto Rábano, Masayuki Yamamoto, Ana I. Rojo & Antonio Cuadrado
Pages: 1902-1916
Published online: 19 Aug 2016
AbstractforTranscription factor NFE2L2/NRF2 is a regulator of macroautophagy genes | Full Text | References | PDF (1.8 MB) | Supplemental
  • 9227 Views
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Open Access
Article
SQSTM1/p62 mediates crosstalk between autophagy and the UPS in DNA repair
Graeme Hewitt, Bernadette Carroll, Rezazadeh Sarallah, Clara Correia-Melo, Mikołaj Ogrodnik, Glyn Nelson, Elsje G. Otten, Diego Manni, Robin Antrobus, Brian A. Morgan, Thomas von Zglinicki, Diana Jurk, Andrei Seluanov, Vera Gorbunova, Terje Johansen, João F. Passos & Viktor I. Korolchuk
Pages: 1917-1930
Published online: 23 Aug 2016
AbstractforSQSTM1/p62 mediates crosstalk between autophagy and the UPS in DNA repair | Full Text | References | PDF (1.6 MB) | Supplemental
  • 6535 Views
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Toolbox

Article
Quantitative chemical proteomics profiling of de novo protein synthesis during starvation-mediated autophagy
Jigang Wang, Jianbin Zhang, Yew-Mun Lee, Pin-Lang Koh, Shukie Ng, Feichao Bao, Qingsong Lin & Han-Ming Shen
Pages: 1931-1944
Published online: 27 Jul 2016
AbstractforQuantitative chemical proteomics profiling of de novo protein synthesis during starvation-mediated autophagy | Full Text | References | PDF (1.2 MB) | Supplemental
  • 3812 Views
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Resource

Article
iLIR database: A web resource for LIR motif-containing proteins in eukaryotes
Anne-Claire Jacomin, Siva Samavedam, Vasilis Promponas & Ioannis P. Nezis
Pages: 1945-1953
Published online: 19 Aug 2016
AbstractforiLIR database: A web resource for LIR motif-containing proteins in eukaryotes | Full Text | References | PDF (1.1 MB) | Supplemental
  • 7763 Views
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Autophagic Puncta

Article Commentary
Lysosome calcium in ROS regulation of autophagy
Xiaoli Zhang, Lu Yu & Haoxing Xu
Pages: 1954-1955
Published online: 31 Aug 2016
AbstractforLysosome calcium in ROS regulation of autophagy | Full Text | PDF (322.1 KB)
  • 5316 Views
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Article Commentary
Spatiotemporal dynamics of autophagy receptors in selective mitophagy
Andrew S. Moore & Erika L. F. Holzbaur
Pages: 1956-1957
Published online: 02 Sep 2016
AbstractforSpatiotemporal dynamics of autophagy receptors in selective mitophagy | Full Text | PDF (389.7 KB) | Supplemental
  • 2275 Views
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Article Commentary
NBR1-dependent selective autophagy is required for efficient cell-matrix adhesion site disassembly
Candia M. Kenific & Jayanta Debnath
Pages: 1958-1959
Published online: 02 Sep 2016
AbstractforNBR1-dependent selective autophagy is required for efficient cell-matrix adhesion site disassembly | Full Text | PDF (321.9 KB)
  • 1201 Views
  • 16 CrossRef citations
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Article Commentary
Hierarchical heterogeneity in mammary tumors and its regulation by autophagy
Syn Kok Yeo & Jun-Lin Guan
Pages: 1960-1961
Published online: 13 Sep 2016
AbstractforHierarchical heterogeneity in mammary tumors and its regulation by autophagy | Full Text | PDF (323.3 KB)
  • 1326 Views
  • 13 CrossRef citations
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Article Commentary
Autophagy induction for the treatment of cancer
Federico Pietrocola, Jonathan Pol, Erika Vacchelli, Elisa E. Baracco, Sarah Levesque, Francesca Castoldi, Maria Chiara Maiuri, Frank Madeo & Guido Kroemer
Pages: 1962-1964
Published online: 14 Sep 2016
AbstractforAutophagy induction for the treatment of cancer | Full Text | PDF (325.6 KB)
  • 3220 Views
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Article Commentary
CDK4-CDK6 inhibitors induce autophagy-mediated degradation of DNMT1 and facilitate the senescence antitumor response
Véronique Bourdeau & Gerardo Ferbeyre
Pages: 1965-1966
Published online: 14 Sep 2016
AbstractforCDK4-CDK6 inhibitors induce autophagy-mediated degradation of DNMT1 and facilitate the senescence antitumor response | Full Text | PDF (340.5 KB)
  • 1854 Views
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Views and Commentaries

Article Commentary
Coordinate regulation of autophagy and the ubiquitin proteasome system by MTOR
Jinghui Zhao & Alfred L. Goldberg
Pages: 1967-1970
Published online: 19 Aug 2016
AbstractforCoordinate regulation of autophagy and the ubiquitin proteasome system by MTOR | Full Text | References | PDF (322 KB)
  • 2528 Views
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