RNA Biology, Volume 16, Issue 9 (2019)

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RNA Biology, Volume 16, Issue 9 (2019)

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Single Molecule Techniques

Guest Editorial

Editorial
The how & why of looking at individual RNAs
Martin Hengesbach
Pages: 1075-1076
Published online: 29 Jul 2019
CitationforThe how & why of looking at individual RNAs | Full Text | References | PDF (245.7 KB) | EPUB
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Review

Review
Kinetics coming into focus: single-molecule microscopy of riboswitch dynamics
Sujay Ray, Adrien Chauvier & Nils G. Walter
Pages: 1077-1085
Published online: 29 Oct 2018
AbstractforKinetics coming into focus: single-molecule microscopy of riboswitch dynamics | Full Text | References | PDF (2.5 MB) | EPUB
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Brief Communication

Rapid Communication
Observation of preQ1-II riboswitch dynamics using single-molecule FRET
Chandani Warnasooriya, Clarence Ling, Ivan A. Belashov, Mohammad Salim, Joseph E. Wedekind & Dmitri N. Ermolenko
Pages: 1086-1092
Published online: 30 Oct 2018
AbstractforObservation of preQ1-II riboswitch dynamics using single-molecule FRET | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
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Review

Review
Facilitated diffusion of Argonaute-mediated target search
Tao Ju Cui & Chirlmin Joo
Pages: 1093-1107
Published online: 20 May 2019
AbstractforFacilitated diffusion of Argonaute-mediated target search | Full Text | References | PDF (3.9 MB) | EPUB
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Review
Recent progress in single-molecule studies of mRNA localization in vivo
Songhee H. Kim, Melissa Vieira, Jae Youn Shim, Hongyoung Choi & Hye Yoon Park
Pages: 1108-1118
Published online: 14 Nov 2018
AbstractforRecent progress in single-molecule studies of mRNA localization in vivo | Full Text | References | PDF (1.4 MB) | EPUB
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Review
Strategic labelling approaches for RNA single-molecule spectroscopy
Gerd Hanspach, Sven Trucks & Martin Hengesbach
Pages: 1119-1132
Published online: 21 Apr 2019
AbstractforStrategic labelling approaches for RNA single-molecule spectroscopy | Full Text | References | PDF (3.5 MB) | EPUB
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Review
RNA-induced initiation of transcriptional silencing (RITS) complex structure and function
Sonali Bhattacharjee, Benjamin Roche & Robert A Martienssen
Pages: 1133-1146
Published online: 18 Jun 2019
AbstractforRNA-induced initiation of transcriptional silencing (RITS) complex structure and function | Full Text | References | PDF (2.1 MB) | EPUB
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Brief Communication

Rapid Communication
mRNA levels are buffered upon knockdown of RNA decay and translation factors via adjustment of transcription rates in human HepG2 cells
Pavneet Singh, Rob S. James, Christopher J Mee & Igor Y. Morozov
Pages: 1147-1155
Published online: 31 May 2019
AbstractformRNA levels are buffered upon knockdown of RNA decay and translation factors via adjustment of transcription rates in human HepG2 cells | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
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Technical Paper

Brief Report
NET-prism enables RNA polymerase-dedicated transcriptional interrogation at nucleotide resolution
Constantine Mylonas & Peter Tessarz
Pages: 1156-1165
Published online: 03 Jun 2019
AbstractforNET-prism enables RNA polymerase-dedicated transcriptional interrogation at nucleotide resolution | Full Text | References | PDF (3.4 MB) | EPUB | Supplemental
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Open Access

Research Paper

Article
A seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system
Saifu Pan, Qi Li, Ling Deng, Suping Jiang, Xuexia Jin, Nan Peng, Yunxiang Liang, Qunxin She & Yingjun Li
Pages: 1166-1178
Published online: 26 May 2019
AbstractforA seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
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Article
The dynamics of FTO binding and demethylation from the m6A motifs
Yixing Li, Kejing Wu, Weili Quan, Lin Yu, Shuang Chen, Chao Cheng, Qijia Wu, Shuhong Zhao, Yi Zhang & Lei Zhou
Pages: 1179-1189
Published online: 31 May 2019
AbstractforThe dynamics of FTO binding and demethylation from the m6A motifs | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
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Article
Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs
Annie Robic, Thomas Faraut, Sarah Djebali, Rosemarie Weikard, Katia Feve, Sarah Maman & Christa Kuehn
Pages: 1190-1204
Published online: 03 Jun 2019
AbstractforAnalysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 1564 Views
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Article
Inactivation of the RNA helicase CrhR impacts a specific subset of the transcriptome in the cyanobacterium Synechocystis sp. PCC 6803
Jens Georg, Albert Remus R. Rosana, Danuta Chamot, Anzhela Migur, Wolfgang R. Hess & George W. Owttrim
Pages: 1205-1214
Published online: 24 Jun 2019
AbstractforInactivation of the RNA helicase CrhR impacts a specific subset of the transcriptome in the cyanobacterium Synechocystis sp. PCC 6803 | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 1545 Views
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Article
RGG-motif self-association regulates eIF4G-binding translation repressor protein Scd6
Gopalakrishna Poornima, Ravishankar Mythili, Priyabrata Nag, Sabnam Parbin, Praveen Kumar Verma, Tanweer Hussain & Purusharth I Rajyaguru
Pages: 1215-1227
Published online: 12 Jun 2019
AbstractforRGG-motif self-association regulates eIF4G-binding translation repressor protein Scd6 | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
  • 3575 Views
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Article
Circular RNA profile of parathyroid neoplasms: analysis of co-expression networks of circular RNAs and mRNAs
Ya Hu, Xiang Zhang, Ming Cui, Mengyi Wang, Zhe Su, Quan Liao & Yupei Zhao
Pages: 1228-1236
Published online: 18 Jun 2019
AbstractforCircular RNA profile of parathyroid neoplasms: analysis of co-expression networks of circular RNAs and mRNAs | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 1151 Views
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Article
CircNAPEPLD is expressed in human and murine spermatozoa and physically interacts with oocyte miRNAs
Marco Ragusa, Davide Barbagallo, Teresa Chioccarelli, Francesco Manfrevola, Gilda Cobellis, Cinzia Di Pietro, Duilia Brex, Rosalia Battaglia, Silvia Fasano, Bruno Ferraro, Carolina Sellitto, Concetta Ambrosino, Luca Roberto, Michele Purrello, Riccardo Pierantoni & Rosanna Chianese
Pages: 1237-1248
Published online: 14 Jun 2019
AbstractforCircNAPEPLD is expressed in human and murine spermatozoa and physically interacts with oocyte miRNAs | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
  • 1201 Views
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Article
CircRNA_28313/miR-195a/CSF1 axis modulates osteoclast differentiation to affect OVX-induced bone absorption in mice
Xia Chen, Zhengxiao Ouyang, Yi Shen, Bo Liu, Qiang Zhang, Lu Wan, Ziqing Yin, Wei Zhu, Shuai Li & Dan Peng
Pages: 1249-1262
Published online: 19 Jun 2019
AbstractforCircRNA_28313/miR-195a/CSF1 axis modulates osteoclast differentiation to affect OVX-induced bone absorption in mice | Full Text | References | PDF (8 MB) | EPUB | Supplemental
  • 3551 Views
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Article
A novel antisense RNA ASPACT confers multi-level suppression of PACT and associated signalling
Yu-Ping Kuo, Chung-Pei Ma, Hui-Wen Chen, Yi-Tung Chen, Yi-Hsuan Lai, Hsuan Liu, Rei-Lin Kuo & Bertrand Chin-Ming Tan
Pages: 1263-1274
Published online: 12 Jun 2019
AbstractforA novel antisense RNA ASPACT confers multi-level suppression of PACT and associated signalling | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 811 Views
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Article
Naturally occurring dual recognition of tRNAHis substrates with and without a universal identity element
Yi-Hsueh Lee, Ya-Ting Lo, Chia-Pei Chang, Chung-Shu Yeh, Tien-Hsien Chang, Yu-Wei Chen, Yi-Kuan Tseng & Chien-Chia Wang
Pages: 1275-1285
Published online: 16 Jun 2019
AbstractforNaturally occurring dual recognition of tRNAHis substrates with and without a universal identity element | Full Text | References | PDF (3.3 MB) | EPUB
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Article
Strand-specific affinity of host factor hnRNP C1/C2 guides positive to negative-strand ratio in Coxsackievirus B3 infection
Pratik Dave, Biju George, Sreenath Balakrishnan, Divya Khandige Sharma, Harsha Raheja, Narendra M. Dixit & Saumitra Das
Pages: 1286-1299
Published online: 24 Jun 2019
AbstractforStrand-specific affinity of host factor hnRNP C1/C2 guides positive to negative-strand ratio in Coxsackievirus B3 infection | Full Text | References | PDF (4.6 MB) | EPUB | Supplemental
  • 1097 Views
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Article
Dissecting macromolecular recognition sites in ribosome: implication to its self-assembly
Smita P. Pilla, Amal Thomas & Ranjit Prasad Bahadur
Pages: 1300-1312
Published online: 17 Jun 2019
AbstractforDissecting macromolecular recognition sites in ribosome: implication to its self-assembly | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 724 Views
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Article
microRNA-14 as an efficient suppressor to switch off ecdysone production after ecdysis in insects
Kang He, Huamei Xiao, Yang Sun, Gongming Situ, Yu Xi & Fei Li
Pages: 1313-1325
Published online: 23 Jun 2019
AbstractformicroRNA-14 as an efficient suppressor to switch off ecdysone production after ecdysis in insects | Full Text | References | PDF (6.1 MB) | EPUB | Supplemental
  • 1709 Views
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