Gut Microbes, Volume 14, Issue 1 (2022)

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Gut Microbes, Volume 14, Issue 1 (2022)

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Research Paper

Article
Classification of Parabacteroides distasonis and other Bacteroidetes using O- antigen virulence gene: RfbA-Typing and hypothesis for pathogenic vs. probiotic strain differentiation
Nicholas C. Bank, Vaidhvi Singh & Alex Rodriguez-Palacios
Article: 1997293
Published online: 28 Jan 2022
AbstractforClassification of Parabacteroides distasonis and other Bacteroidetes using O- antigen virulence gene: RfbA-Typing and hypothesis for pathogenic vs. probiotic strain differentiation | Full Text | References | PDF (5.4 MB) | EPUB | Supplemental
  • 5189 Views
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Open Access
Article
The ancestral stringent response potentiator, DksA has been adapted throughout Salmonella evolution to orchestrate the expression of metabolic, motility, and virulence pathways
Helit Cohen, Boaz Adani, Emiliano Cohen, Bar Piscon, Shalhevet Azriel, Prerak Desai, Heike Bähre, Michael McClelland, Galia Rahav & Ohad Gal-Mor
Article: 1997294
Published online: 20 Dec 2021
AbstractforThe ancestral stringent response potentiator, DksA has been adapted throughout Salmonella evolution to orchestrate the expression of metabolic, motility, and virulence pathways | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 4369 Views
  • 3 CrossRef citations
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Open Access

Review

Review
Gut microbiota-motility interregulation: insights from in vivo, ex vivo and in silico studies
Barbora Waclawiková, Agnese Codutti, Karen Alim & Sahar El Aidy
Article: 1997296
Published online: 03 Jan 2022
AbstractforGut microbiota-motility interregulation: insights from in vivo, ex vivo and in silico studies | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 7837 Views
  • 23 CrossRef citations
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Open Access

Research Paper

Article
Combined berberine and probiotic treatment as an effective regimen for improving postprandial hyperlipidemia in type 2 diabetes patients: a double blinded placebo controlled randomized study
Shujie Wang, Huahui Ren, Huanzi Zhong, Xinjie Zhao, Changkun Li, Jing Ma, Xuejiang Gu, Yaoming Xue, Shan Huang, Jialin Yang, Li Chen, Gang Chen, Shen Qu, Jun Liang, Li Qin, Qin Huang, Yongde Peng, Qi Li, Xiaolin Wang, Yuanqiang Zou, Zhun Shi, Xuelin Li, Tingting Li, Huanming Yang, Shenghan Lai, Guowang Xu, Junhua Li, Yifei Zhang, Yanyun Gu & Weiqing Wang
Article: 2003176
Published online: 20 Dec 2021
AbstractforCombined berberine and probiotic treatment as an effective regimen for improving postprandial hyperlipidemia in type 2 diabetes patients: a double blinded placebo controlled randomized study | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 13480 Views
  • 20 CrossRef citations
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Open Access

Brief Report

Brief Report
An oxidation resistant pediocin PA-1 derivative and penocin A display effective anti-Listeria activity in a model human gut environment
Taís M. Kuniyoshi, Paula M. O’Connor, Elaine Lawton, Dinesh Thapa, Beatriz Mesa-Pereira, Sara Abulu, Colin Hill, R. Paul Ross, Ricardo P. S. Oliveira & Paul D. Cotter
Article: 2004071
Published online: 01 Feb 2022
AbstractforAn oxidation resistant pediocin PA-1 derivative and penocin A display effective anti-Listeria activity in a model human gut environment | Full Text | References | PDF (3.6 MB) | EPUB
  • 4022 Views
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Open Access

Research Paper

Article
Membrane protective role of autophagic machinery during infection of epithelial cells by Candida albicans
Pierre Lapaquette, Amandine Ducreux, Louise Basmaciyan, Tracy Paradis, Fabienne Bon, Amandine Bataille, Pascale Winckler, Bernhard Hube, Christophe d’Enfert, Audrey Esclatine, Elisabeth Dubus, Marie-Agnès Bringer, Etienne Morel & Frédéric Dalle
Article: 2004798
Published online: 27 Jan 2022
AbstractforMembrane protective role of autophagic machinery during infection of epithelial cells by Candida albicans | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 4285 Views
  • 3 CrossRef citations
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Open Access
Article
Impact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a post-hoc analysis of a randomized clinical trial
Shaodong Wei, Asker Daniel Brejnrod, Urvish Trivedi, Martin Steen Mortensen, Mette Yun Johansen, Kristian Karstoft, Allan Arthur Vaag, Mathias Ried-Larsen & Søren Johannes Sørensen
Article: 2005407
Published online: 29 Dec 2021
AbstractforImpact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a post-hoc analysis of a randomized clinical trial | Full Text | References | PDF (698 KB) | EPUB | Supplemental
  • 5714 Views
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Open Access

Commentary and Views

Article Commentary
When to suspect contamination rather than colonization – lessons from a putative fetal sheep microbiome
Simone Bihl, Marcus de Goffau, Daniel Podlesny, Nicola Segata, Fergus Shanahan, Jens Walter & W. Florian Fricke
Article: 2005751
Published online: 20 Dec 2021
AbstractforWhen to suspect contamination rather than colonization – lessons from a putative fetal sheep microbiome | Full Text | References | PDF (819.4 KB) | EPUB
  • 3908 Views
  • 2 CrossRef citations
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Open Access

Research Paper

Article
Restoring an adequate dietary fiber intake by inulin supplementation: a pilot study showing an impact on gut microbiota and sociability in alcohol use disorder patients
Camille Amadieu, Valentin Coste, Audrey M. Neyrinck, Victoria Thijssen, Quentin Leyrolle, Laure B. Bindels, Hubert Piessevaux, Peter Stärkel, Philippe de Timary, Nathalie M. Delzenne & Sophie Leclercq
Article: 2007042
Published online: 20 Dec 2021
AbstractforRestoring an adequate dietary fiber intake by inulin supplementation: a pilot study showing an impact on gut microbiota and sociability in alcohol use disorder patients | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 5481 Views
  • 14 CrossRef citations
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Open Access

Brief Report

Brief Report
Identification of Gut Bacteria such as Lactobacillus johnsonii that Disseminate to Systemic Tissues of Wild Type and MyD88–/– Mice
Sreeram Udayan, Panagiota Stamou, Fiona Crispie, Ana Hickey, Alexandria N. Floyd, Chyi-Song Hsieh, Paul D. Cotter, Orla O’Sullivan, Silvia Melgar, Paul W. O’Toole, Rodney D. Newberry, Valerio Rossini & Ken Nally
Article: 2007743
Published online: 13 Jan 2022
AbstractforIdentification of Gut Bacteria such as Lactobacillus johnsonii that Disseminate to Systemic Tissues of Wild Type and MyD88–/– Mice | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 4358 Views
  • 1 CrossRef citations
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Open Access

Research Paper

Article
Fiber mixture-specific effect on distal colonic fermentation and metabolic health in lean but not in prediabetic men
Emanuel E. Canfora, Gerben D.A. Hermes, Mattea Müller, Jacco Bastings, Elaine E. Vaughan, Marco A. van Den Berg, Jens J. Holst, Koen Venema, Erwin G. Zoetendal & Ellen E. Blaak
Article: 2009297
Published online: 20 Dec 2021
AbstractforFiber mixture-specific effect on distal colonic fermentation and metabolic health in lean but not in prediabetic men | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 5078 Views
  • 11 CrossRef citations
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Open Access

Brief Report

Brief Report
Novel strain of Pseudoruminococcus massiliensis possesses traits important in gut adaptation and host-microbe interactions
Kaisa Hiippala, Imran Khan, Aki Ronkainen, Fredrik Boulund, Helena Vähä-Mäkilä, Maiju Suutarinen, Maike Seifert, Lars Engstrand & Reetta Satokari
Article: 2013761
Published online: 29 Dec 2021
AbstractforNovel strain of Pseudoruminococcus massiliensis possesses traits important in gut adaptation and host-microbe interactions | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 3027 Views
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Open Access

Research Paper

Article
Dietary S. maltophilia induces supersized lipid droplets by enhancing lipogenesis and ER-LD contacts in C. elegans
Kang Xie, Yangli Liu, Xixia Li, Hong Zhang, Shuyan Zhang, Ho Yi Mak & Pingsheng Liu
Article: 2013762
Published online: 03 Feb 2022
AbstractforDietary S. maltophilia induces supersized lipid droplets by enhancing lipogenesis and ER-LD contacts in C. elegans | Full Text | References | PDF (5.4 MB) | EPUB | Supplemental
  • 4450 Views
  • 5 CrossRef citations
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Open Access
Article
Interactions and substrate selectivity within the SctRST complex of the type III secretion system of enteropathogenic Escherichia coli
Irit Tseytin, Shir Lezerovich, Nofar David & Neta Sal-Man
Article: 2013763
Published online: 29 Dec 2021
AbstractforInteractions and substrate selectivity within the SctRST complex of the type III secretion system of enteropathogenic Escherichia coli | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 2872 Views
  • 3 CrossRef citations
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Open Access
Article
Microbial hydrogen economy alleviates colitis by reprogramming colonocyte metabolism and reinforcing intestinal barrier
Li Ge, Jie Qi, Bo Shao, Zhenzhen Ruan, Yueran Ren, Shujing Sui, Xinpei Wu, Xueqiang Sun, Shuman Liu, Sha Li, Changqing Xu & Wengang Song
Article: 2013764
Published online: 13 Jan 2022
AbstractforMicrobial hydrogen economy alleviates colitis by reprogramming colonocyte metabolism and reinforcing intestinal barrier | Full Text | References | PDF (7.6 MB) | EPUB | Supplemental
  • 5539 Views
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Open Access
Article
Loss-of-function SLC30A2 mutants are associated with gut dysbiosis and alterations in intestinal gene expression in preterm infants
Shannon L Kelleher, Samina Alam, Olivia C Rivera, Shiran Barber-Zucker, Raz Zarivach, Takumi Wagatsuma, Taiho Kambe, David I Soybel, Justin Wright & Regina Lamendella
Article: 2014739
Published online: 29 Dec 2021
AbstractforLoss-of-function SLC30A2 mutants are associated with gut dysbiosis and alterations in intestinal gene expression in preterm infants | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 3504 Views
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Open Access
Article
Interleukin-1β secretion induced by mucosa-associated gut commensal bacteria promotes intestinal barrier repair
Wan-Jung H. Wu, Myunghoo Kim, Lin-Chun Chang, Adrien Assie, Fatima B. Saldana-Morales, Daniel F. Zegarra-Ruiz, Kendra Norwood, Buck S. Samuel & Gretchen E. Diehl
Article: 2014772
Published online: 06 Jan 2022
AbstractforInterleukin-1β secretion induced by mucosa-associated gut commensal bacteria promotes intestinal barrier repair | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 7080 Views
  • 17 CrossRef citations
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Open Access
Article
Autophagy mediates ER stress and inflammation in Helicobacter pylori-related gastric cancer
M.C. Mommersteeg, I. Simovic, B. Yu, S.A.V. van Nieuwenburg, I, M.J. Bruno, M. Doukas, E.J. Kuipers, M.C.W. Spaander, M.P. Peppelenbosch, N. Castaño-Rodríguez & G.M. Fuhler
Article: 2015238
Published online: 29 Dec 2021
AbstractforAutophagy mediates ER stress and inflammation in Helicobacter pylori-related gastric cancer | Full Text | References | PDF (3.3 MB) | EPUB | Supplemental
  • 8017 Views
  • 14 CrossRef citations
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Open Access
Article
Prolonged oral antimicrobial administration prevents doxorubicin-induced loss of active intestinal stem cells
Breanna J Sheahan, Casey M Theriot, Jocsa E. Cortes & Christopher M Dekaney
Article: 2018898
Published online: 11 Jan 2022
AbstractforProlonged oral antimicrobial administration prevents doxorubicin-induced loss of active intestinal stem cells | Full Text | References | PDF (4.1 MB) | EPUB | Supplemental
  • 3171 Views
  • 5 CrossRef citations
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Open Access
Article
Probiotic improves symptomatic and viral clearance in Covid19 outpatients: a randomized, quadruple-blinded, placebo-controlled trial
Pedro Gutiérrez-Castrellón, Tania Gandara-Martí, Ana T. Abreu Y Abreu, Cesar D. Nieto-Rufino, Eduardo López-Orduña, Irma Jiménez-Escobar, Carlos Jiménez-Gutiérrez, Gabriel López-Velazquez & Jordi Espadaler-Mazo
Article: 2018899
Published online: 11 Jan 2022
AbstractforProbiotic improves symptomatic and viral clearance in Covid19 outpatients: a randomized, quadruple-blinded, placebo-controlled trial | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 39966 Views
  • 81 CrossRef citations
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Open Access
Article
Alteration of the gut microbiota following SARS-CoV-2 infection correlates with disease severity in hamsters
Valentin Sencio, Arnaud Machelart, Cyril Robil, Nicolas Benech, Eik Hoffmann, Chloé Galbert, Lucie Deryuter, Séverine Heumel, Aline Hantute-Ghesquier, Anne Flourens, Priscille Brodin, Fabrice Infanti, Virgile Richard, Jean Dubuisson, Corinne Grangette, Thierry Sulpice, Isabelle Wolowczuk, Florence Pinet, Vincent Prévot, Sandrine Belouzard, François Briand, Martine Duterque-Coquillaud, Harry Sokol & François Trottein
Article: 2018900
Published online: 29 Dec 2021
AbstractforAlteration of the gut microbiota following SARS-CoV-2 infection correlates with disease severity in hamsters | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 6420 Views
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Open Access
Article
Combined exposure to non-antibiotic pharmaceutics and antibiotics in the gut synergistically promote the development of multi-drug-resistance in Escherichia coli
Danyang Shi, Han Hao, Zilin Wei, Dong Yang, Jing Yin, Haibei Li, Zhengshan Chen, Zhongwei Yang, Tianjiao Chen, Shuqing Zhou, Haiyan Wu, Junwen Li & Min Jin
Article: 2018901
Published online: 11 Jan 2022
AbstractforCombined exposure to non-antibiotic pharmaceutics and antibiotics in the gut synergistically promote the development of multi-drug-resistance in Escherichia coli | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 4476 Views
  • 17 CrossRef citations
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Open Access
Article
Effect of antibiotic pretreatment on bacterial engraftment after Fecal Microbiota Transplant (FMT) in IBS-D
Prashant Singh, Eric J Alm, John M. Kelley, Vivian Cheng, Mark Smith, Zain Kassam, Judy Nee, Johanna Iturrino & Anthony Lembo
Article: 2020067
Published online: 11 Jan 2022
AbstractforEffect of antibiotic pretreatment on bacterial engraftment after Fecal Microbiota Transplant (FMT) in IBS-D | Full Text | References | PDF (544.1 KB) | EPUB | Supplemental
  • 8191 Views
  • 24 CrossRef citations
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Open Access
Article
The association of weight loss with changes in the gut microbiota diversity, composition, and intestinal permeability: a systematic review and meta-analysis
Dimitrios A Koutoukidis, Susan A Jebb, Matthew Zimmerman, Afolarin Otunla, J. Aaron Henry, Anne Ferrey, Ella Schofield, Jade Kinton, Paul Aveyard & Julian R. Marchesi
Article: 2020068
Published online: 18 Jan 2022
AbstractforThe association of weight loss with changes in the gut microbiota diversity, composition, and intestinal permeability: a systematic review and meta-analysis | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 11275 Views
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Open Access
Article
Hybrid, ultra-deep metagenomic sequencing enables genomic and functional characterization of low-abundance species in the human gut microbiome
Hao Jin, Lijun You, Feiyan Zhao, Shenghui Li, Teng Ma, Lai-Yu Kwok, Haiyan Xu & Zhihong Sun
Article: 2021790
Published online: 22 Jan 2022
AbstractforHybrid, ultra-deep metagenomic sequencing enables genomic and functional characterization of low-abundance species in the human gut microbiome | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 7611 Views
  • 20 CrossRef citations
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Open Access

Review

Review
Epigenetic regulation by gut microbiota
Vivienne Woo & Theresa Alenghat
Article: 2022407
Published online: 09 Jan 2022
AbstractforEpigenetic regulation by gut microbiota | Full Text | References | PDF (721.8 KB) | EPUB
  • 12229 Views
  • 73 CrossRef citations
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Open Access

Research Paper

Article
High-sugar, high-fat, and high-protein diets promote antibiotic resistance gene spreading in the mouse intestinal microbiota
Rong Tan, Min Jin, Yifan Shao, Jing Yin, Haibei Li, Tianjiao Chen, Danyang Shi, Shuqing Zhou, Junwen Li & Dong Yang
Article: 2022442
Published online: 14 Jan 2022
AbstractforHigh-sugar, high-fat, and high-protein diets promote antibiotic resistance gene spreading in the mouse intestinal microbiota | Full Text | References | PDF (6.9 MB) | EPUB | Supplemental
  • 5781 Views
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Open Access
Article
AhR/IL-22 pathway as new target for the treatment of post-infectious irritable bowel syndrome symptoms
Maëva Meynier, Elodie Baudu, Nathalie Rolhion, Manon Defaye, Marjolène Straube, Valentine Daugey, Morgane Modoux, Ivan Wawrzyniak, Frédéric Delbac, Romain Villéger, Mathieu Méleine, Esther Borras Nogues, Catherine Godfraind, Nicolas Barnich, Denis Ardid, Philippe Poirier, Harry Sokol, Jean-Marc Chatel, Philippe Langella, Valérie Livrelli, Mathilde Bonnet & Frédéric Antonio Carvalho
Article: 2022997
Published online: 28 Jan 2022
AbstractforAhR/IL-22 pathway as new target for the treatment of post-infectious irritable bowel syndrome symptoms | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 9141 Views
  • 17 CrossRef citations
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Open Access
Article
Linkage analysis identifies novel genetic modifiers of microbiome traits in families with inflammatory bowel disease
Arunabh Sharma, Silke Szymczak, Malte Rühlemann, Sandra Freitag-Wolf, Carolin Knecht, Janna Enderle, Stefan Schreiber, Andre Franke, Wolfgang Lieb, Michael Krawczak & Astrid Dempfle
Article: 2024415
Published online: 06 Feb 2022
AbstractforLinkage analysis identifies novel genetic modifiers of microbiome traits in families with inflammatory bowel disease | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 3389 Views
  • 5 CrossRef citations
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Open Access
Article
Human gut microbiome aging clocks based on taxonomic and functional signatures through multi-view learning
Yutao Chen, Hongchao Wang, Wenwei Lu, Tong Wu, Weiwei Yuan, Jinlin Zhu, Yuan Kun Lee, Jianxin Zhao, Hao Zhang & Wei Chen
Article: 2025016
Published online: 18 Jan 2022
AbstractforHuman gut microbiome aging clocks based on taxonomic and functional signatures through multi-view learning | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 7907 Views
  • 18 CrossRef citations
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Open Access
Article
The evolution and competitive strategies of Akkermansia muciniphila in gut
Ji-Sun Kim, Se Won Kang, Ju Huck Lee, Seung-Hwan Park & Jung-Sook Lee
Article: 2025017
Published online: 09 Mar 2022
AbstractforThe evolution and competitive strategies of Akkermansia muciniphila in gut | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
  • 6551 Views
  • 24 CrossRef citations
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Open Access

Review

Review
Fabry disease – a multisystemic disease with gastrointestinal manifestations
Malte Lenders & Eva Brand
Article: 2027852
Published online: 28 Jan 2022
AbstractforFabry disease – a multisystemic disease with gastrointestinal manifestations | Full Text | References | PDF (2.2 MB) | EPUB
  • 5689 Views
  • 14 CrossRef citations
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Open Access

Research Paper

Article
Bacteroides acidifaciens in the gut plays a protective role against CD95-mediated liver injury
Hesuiyuan Wang, Qing Wang, Chengmao Yang, Mingming Guo, Xiaoyue Cui, Zhe Jing, Yujie Liu, Wanjin Qiao, Hang Qi, Hongyang Zhang, Xu Zhang, Na Zhao, Mengjuan Zhang, Min Chen, Song Zhang, Haijin Xu, Liqing Zhao, Mingqiang Qiao & Zhenzhou Wu
Article: 2027853
Published online: 06 Feb 2022
AbstractforBacteroides acidifaciens in the gut plays a protective role against CD95-mediated liver injury | Full Text | References | PDF (9.7 MB) | EPUB | Supplemental
  • 6935 Views
  • 25 CrossRef citations
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Open Access
Article
A specific microbiota signature is associated to various degrees of ulcerative colitis as assessed by a machine learning approach
Brigida Barberio, Sonia Facchin, Ilaria Patuzzi, Alexander C. Ford, Davide Massimi, Giorgio Valle, Eleonora Sattin, Barbara Simionati, Elena Bertazzo, Fabiana Zingone & Edoardo Vincenzo Savarino
Article: 2028366
Published online: 06 Feb 2022
AbstractforA specific microbiota signature is associated to various degrees of ulcerative colitis as assessed by a machine learning approach | Full Text | References | PDF (7.7 MB) | EPUB | Supplemental
  • 3955 Views
  • 21 CrossRef citations
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Open Access
Article
Single-cell genomics for resolution of conserved bacterial genes and mobile genetic elements of the human intestinal microbiota using flow cytometry
Dylan Lawrence, Danielle E. Campbell, Lawrence A. Schriefer, Rachel Rodgers, Forrest C. Walker, Marissa Turkin, Lindsay Droit, Miles Parkes, Scott A. Handley & Megan T. Baldridge
Article: 2029673
Published online: 07 Feb 2022
AbstractforSingle-cell genomics for resolution of conserved bacterial genes and mobile genetic elements of the human intestinal microbiota using flow cytometry | Full Text | References | PDF (5.3 MB) | EPUB | Supplemental
  • 4579 Views
  • 3 CrossRef citations
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Open Access
Article
Circulating microbiome in patients with portal hypertension
Rolandas Gedgaudas, Jasmohan S Bajaj, Jurgita Skieceviciene, Greta Varkalaite, Gabija Jurkeviciute, Sigita Gelman, Irena Valantiene, Romanas Zykus, Andrius Pranculis, Corinna Bang, Andre Franke, Christoph Schramm & Juozas Kupcinskas
Article: 2029674
Published online: 07 Feb 2022
AbstractforCirculating microbiome in patients with portal hypertension | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 4790 Views
  • 18 CrossRef citations
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Open Access
Article
The gut microbiota mediates protective immunity against tuberculosis via modulation of lncRNA
Fang Yang, Yi Yang, Lingming Chen, Zhiyi Zhang, Linna Liu, Chunmin Zhang, Qiongdan Mai, Yiwei Chen, Zixu Chen, Tao Lin, Liang Chen, Huixin Guo, Lin Zhou, Hongbo Shen, Xinchun Chen, Lei Liu, Guoliang Zhang, Hongying Liao, Lingchan Zeng & Gucheng Zeng
Article: 2029997
Published online: 28 Mar 2022
AbstractforThe gut microbiota mediates protective immunity against tuberculosis via modulation of lncRNA | Full Text | References | PDF (5.4 MB) | EPUB | Supplemental
  • 6661 Views
  • 19 CrossRef citations
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Review

Review
Cellulolytic bacteria in the large intestine of mammals
Alicia Froidurot & Véronique Julliand
Article: 2031694
Published online: 20 Feb 2022
AbstractforCellulolytic bacteria in the large intestine of mammals | Full Text | References | PDF (2.6 MB) | EPUB
  • 4796 Views
  • 21 CrossRef citations
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Research Paper

Article
Lactobacillus rhamnosus CNCM I-3690 decreases subjective academic stress in healthy adults: a randomized placebo-controlled trial
Lucas Wauters, Luka Van Oudenhove, Alison Accarie, Karlien Geboers, Hannelore Geysen, Joran Toth, Anja Luypaerts, Kristin Verbeke, Tamara Smokvina, Jeroen Raes, Jan Tack & Tim Vanuytsel
Article: 2031695
Published online: 07 Feb 2022
AbstractforLactobacillus rhamnosus CNCM I-3690 decreases subjective academic stress in healthy adults: a randomized placebo-controlled trial | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 5740 Views
  • 13 CrossRef citations
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Open Access
Article
Compensatory intestinal antibody response against pro-inflammatory microbiota after bariatric surgery
Torsten P.M. Scheithauer, Mark Davids, Maaike Winkelmeijer, Xanthe Verdoes, Ömrüm Aydin, Maurits de Brauw, Arnold van de Laar, Abraham S. Meijnikman, Victor E.A. Gerdes, Daniël van Raalte, Hilde Herrema & Max Nieuwdorp
Article: 2031696
Published online: 07 Feb 2022
AbstractforCompensatory intestinal antibody response against pro-inflammatory microbiota after bariatric surgery | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 2917 Views
  • 11 CrossRef citations
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Open Access
Article
Gut bacterial dysbiosis and instability is associated with the onset of complications and mortality in COVID-19
David Schult, Sandra Reitmeier, Plamena Koyumdzhieva, Tobias Lahmer, Moritz Middelhoff, Johanna Erber, Jochen Schneider, Juliane Kager, Marina Frolova, Julia Horstmann, Lisa Fricke, Katja Steiger, Moritz Jesinghaus, Klaus-Peter Janssen, Ulrike Protzer, Klaus Neuhaus, Roland M. Schmid, Dirk Haller & Michael Quante
Article: 2031840
Published online: 17 Feb 2022
AbstractforGut bacterial dysbiosis and instability is associated with the onset of complications and mortality in COVID-19 | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 5421 Views
  • 43 CrossRef citations
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Open Access
Article
Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics
Xu Zhang, Krystal Walker, Janice Mayne, Leyuan Li, Zhibin Ning, Alain Stintzi & Daniel Figeys
Article: 2035658
Published online: 07 Feb 2022
AbstractforEvaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
  • 3543 Views
  • 4 CrossRef citations
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Open Access

Review

Review Article
Next-generation probiotics – do they open new therapeutic strategies for cancer patients?
Karolina Kaźmierczak-Siedlecka, Karolina Skonieczna-Żydecka, Theodore Hupp, Renata Duchnowska, Natalia Marek-Trzonkowska & Karol Połom
Article: 2035659
Published online: 15 Feb 2022
AbstractforNext-generation probiotics – do they open new therapeutic strategies for cancer patients? | Full Text | References | PDF (615.4 KB) | EPUB
  • 10131 Views
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Research Paper

Article
Pro-mutagenic effects of the gut microbiota in a Lynch syndrome mouse model
Wietske Pieters, Floor Hugenholtz, Kevin Kos, Maxime Cammeraat, Teddy C. Moliej, Daphne Kaldenbach, Sjoerd Klarenbeek, Mark Davids, Lisa Drost, Charlotte de Konink, Elly Delzenne-Goette, Karin E. de Visser & Hein te Riele
Article: 2035660
Published online: 21 Feb 2022
AbstractforPro-mutagenic effects of the gut microbiota in a Lynch syndrome mouse model | Full Text | References | PDF (4.1 MB) | EPUB | Supplemental
  • 3235 Views
  • 3 CrossRef citations
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Open Access
Article
Psychological stress disrupts intestinal epithelial cell function and mucosal integrity through microbe and host-directed processes
Jacob M. Allen, Amy R. Mackos, Robert M. Jaggers, Patricia C. Brewster, Mikaela Webb, Chia-Hao Lin, Chris Ladaika, Ronald Davies, Peter White, Brett R. Loman & Michael T. Bailey
Article: 2035661
Published online: 20 Feb 2022
AbstractforPsychological stress disrupts intestinal epithelial cell function and mucosal integrity through microbe and host-directed processes | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 5210 Views
  • 13 CrossRef citations
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Article
Fusobacterium nucleatum promotes colorectal cancer cells adhesion to endothelial cells and facilitates extravasation and metastasis by inducing ALPK1/NF-κB/ICAM1 axis
Ying Zhang, Lu Zhang, Sheng Zheng, Mengjie Li, Chaochao Xu, Dingjiacheng Jia, Yadong Qi, Tongyao Hou, Lan Wang, Boya Wang, Aiqing Li, Shujie Chen, Jianmin Si & Wei Zhuo
Article: 2038852
Published online: 27 Feb 2022
AbstractforFusobacterium nucleatum promotes colorectal cancer cells adhesion to endothelial cells and facilitates extravasation and metastasis by inducing ALPK1/NF-κB/ICAM1 axis | Full Text | References | PDF (6.4 MB) | EPUB | Supplemental
  • 7969 Views
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Article
Development of the gut microbiota in healthy children in the first ten years of life: associations with internalizing and externalizing behavior
Yangwenshan Ou, Clara Belzer, Hauke Smidt & Carolina de Weerth
Article: 2038853
Published online: 19 Feb 2022
AbstractforDevelopment of the gut microbiota in healthy children in the first ten years of life: associations with internalizing and externalizing behavior | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 4760 Views
  • 15 CrossRef citations
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Article
Flagellum and toxin phase variation impacts intestinal colonization and disease development in a mouse model of Clostridioides difficile infection
Dominika Trzilova, Mercedes A. H. Warren, Nicole C. Gadda, Caitlin L. Williams & Rita Tamayo
Article: 2038854
Published online: 22 Feb 2022
AbstractforFlagellum and toxin phase variation impacts intestinal colonization and disease development in a mouse model of Clostridioides difficile infection | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 2725 Views
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Article
Timing of antimicrobial prophylaxis for cesarean section is critical for gut microbiome development in term born infants
Verena Bossung, Mariia Lupatsii, Lkhagvademberel Dashdorj, Oronzo Tassiello, Sinje Jonassen, Julia Pagel, Martin Demmert, Ellinor Anna Wolf, Achim Rody, Silvio Waschina, Simon Graspeuntner, Jan Rupp & Christoph Härtel
Article: 2038855
Published online: 20 Feb 2022
AbstractforTiming of antimicrobial prophylaxis for cesarean section is critical for gut microbiome development in term born infants | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 5486 Views
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Review

Review
The potential utility of fecal (or intestinal) microbiota transplantation in controlling infectious diseases
Rohma Ghani, Benjamin H. Mullish, Lauren A. Roberts, Frances J. Davies & Julian R. Marchesi
Article: 2038856
Published online: 01 Mar 2022
AbstractforThe potential utility of fecal (or intestinal) microbiota transplantation in controlling infectious diseases | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 4383 Views
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Research Paper

Article
The potential of fecal microbiota and amino acids to detect and monitor patients with adenoma
Sofie Bosch, Animesh Acharjee, Mohammed N Quraishi, Patricia Rojas, Abdellatif Bakkali, Erwin EW Jansen, Marina Brizzio Brentar, Johan Kuijvenhoven, Pieter Stokkers, Eduard Struys, Andrew D Beggs, Georgios V Gkoutos, Tim GJ de Meij & Nanne KH de Boer
Article: 2038863
Published online: 21 Feb 2022
AbstractforThe potential of fecal microbiota and amino acids to detect and monitor patients with adenoma | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
  • 3838 Views
  • 9 CrossRef citations
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Review

Review
The role of key gut microbial metabolites in the development and treatment of cancer
Kayla Jaye, Chun Guang Li, Dennis Chang & Deep Jyoti Bhuyan
Article: 2038865
Published online: 27 Feb 2022
AbstractforThe role of key gut microbial metabolites in the development and treatment of cancer | Full Text | References | PDF (2.8 MB) | EPUB
  • 7288 Views
  • 30 CrossRef citations
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Research Paper

Article
An in vitro intestinal model captures immunomodulatory properties of the microbiota in inflammation
Jaclyn Y. Lock, Mariaelena Caboni, Philip Strandwitz, Madeleine Morrissette, Kevin DiBona, Brian A. Joughin, Kim Lewis & Rebecca L. Carrier
Article: 2039002
Published online: 22 Mar 2022
AbstractforAn in vitro intestinal model captures immunomodulatory properties of the microbiota in inflammation | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 3092 Views
  • 1 CrossRef citations
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Review

Review
Impact of quorum sensing signaling molecules in gram-negative bacteria on host cells: current understanding and future perspectives
Yingping Xiao, Huicong Zou, Jingjing Li, Tongxing Song, Wentao Lv, Wen Wang, Zhenyu Wang & Shiyu Tao
Article: 2039048
Published online: 19 Feb 2022
AbstractforImpact of quorum sensing signaling molecules in gram-negative bacteria on host cells: current understanding and future perspectives | Full Text | References | PDF (1.5 MB) | EPUB
  • 7474 Views
  • 24 CrossRef citations
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Review Article
Mucus, commensals, and the immune system
Qing Zhao & Craig L. Maynard
Article: 2041342
Published online: 03 Mar 2022
AbstractforMucus, commensals, and the immune system | Full Text | References | PDF (1.1 MB) | EPUB
  • 5564 Views
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Research Paper

Article
Upregulation of antimicrobial peptide expression in slc26a3-/- mice with colonic dysbiosis and barrier defect
Archana Kini, Bei Zhao, Marijana Basic, Urmi Roy, Aida Iljazovic, Ivan Odak, Zhenghao Ye, Brigitte Riederer, Gabriella Di Stefano, Dorothee Römermann, Christian Koenecke, André Bleich, Till Strowig & Ursula Seidler
Article: 2041943
Published online: 01 Mar 2022
AbstractforUpregulation of antimicrobial peptide expression in slc26a3-/- mice with colonic dysbiosis and barrier defect | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 2938 Views
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Article
Host immune response mediates changes in cagA copy number and virulence potential of Helicobacter pylori
Sungil Jang, Lori M. Hansen, Hanfu Su, Jay V. Solnick & Jeong-Heon Cha
Article: 2044721
Published online: 15 Mar 2022
AbstractforHost immune response mediates changes in cagA copy number and virulence potential of Helicobacter pylori | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 3101 Views
  • 5 CrossRef citations
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Article
Increasing the diversity of dietary fibers in a daily-consumed bread modifies gut microbiota and metabolic profile in subjects at cardiometabolic risk
Harimalala Ranaivo, Florence Thirion, Christel Béra-Maillet, Susie Guilly, Chantal Simon, Monique Sothier, Laurie Van Den Berghe, Nathalie Feugier-Favier, Stéphanie Lambert-Porcheron, Isabelle Dussous, Loïc Roger, Hugo Roume, Nathalie Galleron, Nicolas Pons, Emmanuelle Le Chatelier, Stanislav Dusko Ehrlich, Martine Laville, Joël Doré & Julie-Anne Nazare
Article: 2044722
Published online: 20 Mar 2022
AbstractforIncreasing the diversity of dietary fibers in a daily-consumed bread modifies gut microbiota and metabolic profile in subjects at cardiometabolic risk | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
  • 7746 Views
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Article
Bifidobacterium longum mediated tryptophan metabolism to improve atopic dermatitis via the gut-skin axis
Zhifeng Fang, Tong Pan, Lingzhi Li, Hongchao Wang, Jinlin Zhu, Hao Zhang, Jianxin Zhao, Wei Chen & Wenwei Lu
Article: 2044723
Published online: 03 Mar 2022
AbstractforBifidobacterium longum mediated tryptophan metabolism to improve atopic dermatitis via the gut-skin axis | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 12783 Views
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Article
Gut commensal Limosilactobacillus reuteri induces atypical memory-like phenotype in human dendritic cells in vitro
Gintare Lasaviciute, Myriam Barz, Marieke van der Heiden, Claudia Arasa, Kanwal Tariq, Jaclyn Quin, Ann-Kristin Östlund Farrants & Eva Sverremark-Ekström
Article: 2045046
Published online: 08 Mar 2022
AbstractforGut commensal Limosilactobacillus reuteri induces atypical memory-like phenotype in human dendritic cells in vitro | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 3440 Views
  • 5 CrossRef citations
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Article
Granzyme B+ CD4 T cells accumulate in the colon during chronic HIV-1 infection
Stephanie M. Dillon, Kaylee L. Mickens, Tezha A. Thompson, Emily H. Cooper, Sabrina Nesladek, Allison J. Christians, Moriah Castleman, Kejun Guo, Cheyret Wood, Daniel N. Frank, Katerina Kechris, Mario L. Santiago & Cara C. Wilson
Article: 2045852
Published online: 08 Mar 2022
AbstractforGranzyme B+ CD4 T cells accumulate in the colon during chronic HIV-1 infection | Full Text | References | PDF (1.6 MB) | EPUB
  • 2638 Views
  • 2 CrossRef citations
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Article
Dietary manipulation of the gut microbiome in inflammatory bowel disease patients: Pilot study
Barbara Olendzki, Vanni Bucci, Caitlin Cawley, Rene Maserati, Margaret McManus, Effie Olednzki, Camilla Madziar, David Chiang, Doyle V. Ward, Randall Pellish, Christine Foley, Shakti Bhattarai, Beth A. McCormick & Ana Maldonado-Contreras
Article: 2046244
Published online: 20 Mar 2022
AbstractforDietary manipulation of the gut microbiome in inflammatory bowel disease patients: Pilot study | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 7526 Views
  • 23 CrossRef citations
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Article
Lacticaseibacillus paracasei sh2020 induced antitumor immunity and synergized with anti-programmed cell death 1 to reduce tumor burden in mice
Shi-Long Zhang, Bing Han, Yu-Qin Mao, Zheng-Yan Zhang, Zhan-Ming Li, Chao-Yue Kong, You Wu, Guo-Qiang Chen & Li-Shun Wang
Article: 2046246
Published online: 08 Mar 2022
AbstractforLacticaseibacillus paracasei sh2020 induced antitumor immunity and synergized with anti-programmed cell death 1 to reduce tumor burden in mice | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 4416 Views
  • 23 CrossRef citations
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Article
Acids produced by lactobacilli inhibit the growth of commensal Lachnospiraceae and S24-7 bacteria
Emma J. E. Brownlie, Danica Chaharlangi, Erin Oi-Yan Wong, Deanna Kim & William Wiley Navarre
Article: 2046452
Published online: 10 Mar 2022
AbstractforAcids produced by lactobacilli inhibit the growth of commensal Lachnospiraceae and S24-7 bacteria | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
  • 4268 Views
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Article
The human gut microbiota contributes to type-2 diabetes non-resolution 5-years after Roux-en-Y gastric bypass
Jean Debédat, Tiphaine Le Roy, Lise Voland, Eugeni Belda, Rohia Alili, Solia Adriouch, Pierre Bel Lassen, Kazuyuki Kasahara, Evan Hutchison, Laurent Genser, Licia Torres, Camille Gamblin, Christine Rouault, Jean-Daniel Zucker, Nathalie Kapel, Christine Poitou, Geneviève Marcelin, Federico E. Rey, Judith Aron-Wisnewsky & Karine Clément
Article: 2050635
Published online: 18 Apr 2022
AbstractforThe human gut microbiota contributes to type-2 diabetes non-resolution 5-years after Roux-en-Y gastric bypass | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 4750 Views
  • 11 CrossRef citations
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Article
Roux-en-Y gastric bypass and sleeve gastrectomy induce substantial and persistent changes in microbial communities and metabolic pathways
Jerry T. Dang, Valentin Mocanu, Heekuk Park, Michael Laffin, Naomi Hotte, Shahzeer Karmali, Daniel W. Birch & Karen L. Madsen
Article: 2050636
Published online: 22 Mar 2022
AbstractforRoux-en-Y gastric bypass and sleeve gastrectomy induce substantial and persistent changes in microbial communities and metabolic pathways | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
  • 3629 Views
  • 13 CrossRef citations
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Article
Obesity is associated with a distinct brain-gut microbiome signature that connects Prevotella and Bacteroides to the brain’s reward center
Tien S. Dong, Michelle Guan, Emeran A. Mayer, Jean Stains, Cathy Liu, Priten Vora, Jonathan P. Jacobs, Venu Lagishetty, Lin Chang, Robert L. Barry & Arpana Gupta
Article: 2051999
Published online: 20 Mar 2022
AbstractforObesity is associated with a distinct brain-gut microbiome signature that connects Prevotella and Bacteroides to the brain’s reward center | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 7002 Views
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Article
The development of live biotherapeutics against Clostridioides difficile infection towards reconstituting gut microbiota
Yongrong Zhang, Ashley Saint Fleur & Hanping Feng
Article: 2052698
Published online: 23 Mar 2022
AbstractforThe development of live biotherapeutics against Clostridioides difficile infection towards reconstituting gut microbiota | Full Text | References | PDF (720.5 KB) | EPUB | Supplemental
  • 3597 Views
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Review

Review Article
The barrier and beyond: Roles of intestinal mucus and mucin-type O-glycosylation in resistance and tolerance defense strategies guiding host-microbe symbiosis
Kirk Bergstrom & Lijun Xia
Article: 2052699
Published online: 05 Apr 2022
AbstractforThe barrier and beyond: Roles of intestinal mucus and mucin-type O-glycosylation in resistance and tolerance defense strategies guiding host-microbe symbiosis | Full Text | References | PDF (5.1 MB) | EPUB
  • 5469 Views
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Research Paper

Article
Type VI secretion system-associated FHA domain protein TagH regulates the hemolytic activity and virulence of Vibrio cholerae
Guangli Wang, Chan Fan, Hui Wang, Chengyi Jia, Xiaoting Li, Jianru Yang, Tao Zhang, Song Gao, Xun Min & Jian Huang
Article: 2055440
Published online: 06 Apr 2022
AbstractforType VI secretion system-associated FHA domain protein TagH regulates the hemolytic activity and virulence of Vibrio cholerae | Full Text | References | PDF (10 MB) | EPUB | Supplemental
  • 3056 Views
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Article
A Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model
Natasha Haskey, Jiayu Ye, Mehrbod Estaki, Andrea A. Verdugo Meza, Jacqueline A. Barnett, Mitra Yousefi, Blake W. Birnie, Samantha Gruenheid, Sanjoy Ghosh & Deanna L. Gibson
Article: 2055441
Published online: 26 Apr 2022
AbstractforA Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model | Full Text | References | PDF (6.3 MB) | EPUB | Supplemental
  • 3898 Views
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Review

Review Article
Enterotoxigenic Escherichia coli: intestinal pathogenesis mechanisms and colonization resistance by gut microbiota
Yucheng Zhang, Peng Tan, Ying Zhao & Xi Ma
Article: 2055943
Published online: 31 Mar 2022
AbstractforEnterotoxigenic Escherichia coli: intestinal pathogenesis mechanisms and colonization resistance by gut microbiota | Full Text | References | PDF (3.4 MB) | EPUB
  • 9718 Views
  • 26 CrossRef citations
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Review Article
Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome
Alexander Crits-Christoph, Haley Anne Hallowell, Kalia Koutouvalis & Jotham Suez
Article: 2055944
Published online: 25 Mar 2022
AbstractforGood microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome | Full Text | References | PDF (2.1 MB) | EPUB
  • 10870 Views
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Research Paper

Article
A dietary carbohydrate – gut Parasutterella – human fatty acid biosynthesis metabolic axis in obesity and type 2 diabetes
Lea Henneke, Kristina Schlicht, Nadia A. Andreani, Tim Hollstein, Tobias Demetrowitsch, Carina Knappe, Katharina Hartmann, Julia Jensen-Kroll, Nathalie Rohmann, Daniela Pohlschneider, Corinna Geisler, Dominik M. Schulte, Ute Settgast, Kathrin Türk, Johannes Zimmermann, Christoph Kaleta, John F. Baines, Jane Shearer, Shrushti Shah, Grace Shen-Tu, Karin Schwarz, Andre Franke, Stefan Schreiber & Matthias Laudes
Article: 2057778
Published online: 18 Apr 2022
AbstractforA dietary carbohydrate – gut Parasutterella – human fatty acid biosynthesis metabolic axis in obesity and type 2 diabetes | Full Text | References | PDF (4.4 MB) | EPUB | Supplemental
  • 5241 Views
  • 30 CrossRef citations
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Article
Maternal consumption of a fermented diet protects offspring against intestinal inflammation by regulating the gut microbiota
Cheng Wang, Siyu Wei, Bojing Liu, Fengqin Wang, Zeqing Lu, Mingliang Jin & Yizhen Wang
Article: 2057779
Published online: 04 May 2022
AbstractforMaternal consumption of a fermented diet protects offspring against intestinal inflammation by regulating the gut microbiota | Full Text | References | PDF (29.6 MB) | EPUB | Supplemental
  • 8050 Views
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Brief Report

Report
The unforeseen intracellular lifestyle of Enterococcus faecalis in hepatocytes
Natalia Nunez, Aurélie Derré-Bobillot, Nicolas Trainel, Goran Lakisic, Alexandre Lecomte, Françoise Mercier-Nomé, Anne-Marie Cassard, Hélène Bierne, Pascale Serror & Cristel Archambaud
Article: 2058851
Published online: 03 Apr 2022
AbstractforThe unforeseen intracellular lifestyle of Enterococcus faecalis in hepatocytes | Full Text | References | PDF (5.7 MB) | EPUB | Supplemental
  • 3334 Views
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Research Paper

Article
Enterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli
Matthew Davies, Gianluca Galazzo, Jarne M. van Hattem, Maris S. Arcilla, Damian C. Melles, Menno D. de Jong, Constance Schultsz, Petra Wolffs, Alan McNally, Willem van Schaik & John Penders
Article: 2060676
Published online: 07 Apr 2022
AbstractforEnterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 3386 Views
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Article
Integrated fecal microbiome–metabolome signatures reflect stress and serotonin metabolism in irritable bowel syndrome
Zlatan Mujagic, Melpomeni Kasapi, Daisy MAE Jonkers, Isabel Garcia-Perez, Lisa Vork, Zsa Zsa R.M. Weerts, Jose Ivan Serrano-Contreras, Alexandra Zhernakova, Alexander Kurilshikov, Jamie Scotcher, Elaine Holmes, Cisca Wijmenga, Daniel Keszthelyi, Jeremy K Nicholson, Joram M Posma & Ad AM Masclee
Article: 2063016
Published online: 21 Apr 2022
AbstractforIntegrated fecal microbiome–metabolome signatures reflect stress and serotonin metabolism in irritable bowel syndrome | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 9238 Views
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Article
Coordinated interaction between Lon protease and catalase-peroxidase regulates virulence and oxidative stress management during Salmonellosis
Perumalraja Kirthika, Vijayakumar Jawalagatti, Amal Senevirathne & John Hwa Lee
Article: 2064705
Published online: 19 Apr 2022
AbstractforCoordinated interaction between Lon protease and catalase-peroxidase regulates virulence and oxidative stress management during Salmonellosis | Full Text | References | PDF (14.9 MB) | EPUB | Supplemental
  • 2353 Views
  • 3 CrossRef citations
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Article
Campylobacter jejuni induces autoimmune peripheral neuropathy via Sialoadhesin and Interleukin-4 axes
Ankit Malik, Jean M. Brudvig, Barbie J. Gadsden, Alexander D. Ethridge & Linda S. Mansfield
Article: 2064706
Published online: 20 Apr 2022
AbstractforCampylobacter jejuni induces autoimmune peripheral neuropathy via Sialoadhesin and Interleukin-4 axes | Full Text | References | PDF (10.2 MB) | EPUB | Supplemental
  • 2884 Views
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Review

Review
Communication between the gut microbiota and peripheral nervous system in health and chronic disease
Tyler M. Cook & Virginie Mansuy-Aubert
Article: 2068365
Published online: 28 Apr 2022
AbstractforCommunication between the gut microbiota and peripheral nervous system in health and chronic disease | Full Text | References | PDF (4.9 MB) | EPUB
  • 8663 Views
  • 14 CrossRef citations
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Research Paper

Article
Disordered development of gut microbiome interferes with the establishment of the gut ecosystem during early childhood with atopic dermatitis
Min-Jung Lee, Yoon Mee Park, Byunghyun Kim, in Hwan Tae, Nam-Eun Kim, Marina Pranata, Taewon Kim, Sungho Won, Nam Joo Kang, Yun Kyung Lee, Dong-Woo Lee, Myung Hee Nam, Soo-Jong Hong & Bong-Soo Kim
Article: 2068366
Published online: 29 Apr 2022
AbstractforDisordered development of gut microbiome interferes with the establishment of the gut ecosystem during early childhood with atopic dermatitis | Full Text | References | PDF (4.6 MB) | EPUB | Supplemental
  • 5658 Views
  • 16 CrossRef citations
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Review

Review
Utilization of glycosaminoglycans by the human gut microbiota: participating bacteria and their enzymatic machineries
Parkash Singh Rawat, Ahkam Saddam Seyed Hameed, Xiangfeng Meng & Weifeng Liu
Article: 2068367
Published online: 28 Apr 2022
AbstractforUtilization of glycosaminoglycans by the human gut microbiota: participating bacteria and their enzymatic machineries | Full Text | References | PDF (6.5 MB) | EPUB
  • 3978 Views
  • 19 CrossRef citations
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Research Paper

Article
Engineered Escherichia coli Nissle 1917 with urate oxidase and an oxygen-recycling system for hyperuricemia treatment
Rui Zhao, Zimai Li, Yuqing Sun, Wei Ge, Mingyu Wang, Huaiwei Liu, Luying Xun & Yongzhen Xia
Article: 2070391
Published online: 01 May 2022
AbstractforEngineered Escherichia coli Nissle 1917 with urate oxidase and an oxygen-recycling system for hyperuricemia treatment | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 7410 Views
  • 16 CrossRef citations
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Article
Integrative multiomics analysis reveals host-microbe-metabolite interplays associated with the aging process in Singaporeans
Liwei Chen, Tingting Zheng, Yifan Yang, Prem Prashant Chaudhary, Jean Pui Yi Teh, Bobby K. Cheon, Daniela Moses, Stephan C. Schuster, Joergen Schlundt, Jun Li & Patricia L. Conway
Article: 2070392
Published online: 12 May 2022
AbstractforIntegrative multiomics analysis reveals host-microbe-metabolite interplays associated with the aging process in Singaporeans | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 4000 Views
  • 5 CrossRef citations
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Article
A high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2
Werner C. Albrich, Tarini Shankar Ghosh, Sinead Ahearn-Ford, Flora Mikaeloff, Nonhlanhla Lunjani, Brian Forde, Noémie Suh, Gian-Reto Kleger, Urs Pietsch, Manuel Frischknecht, Christian Garzoni, Rossella Forlenza, Mary Horgan, Corinna Sadlier, Tommaso Rochat Negro, Jérôme Pugin, Hannah Wozniak, Andreas Cerny, Ujjwal Neogi, Paul W. O’Toole & Liam O’Mahony
Article: 2073131
Published online: 15 May 2022
AbstractforA high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2 | Full Text | References | PDF (4.9 MB) | EPUB | Supplemental
  • 4988 Views
  • 34 CrossRef citations
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Article
Arginine-mediated gut microbiome remodeling promotes host pulmonary immune defense against nontuberculous mycobacterial infection
Young Jae Kim, June-Young Lee, Jae Jin Lee, Sang Min Jeon, Prashanta Silwal, In Soo Kim, Hyeon Ji Kim, Cho Rong Park, Chaeuk Chung, Jeong Eun Han, Jee-Won Choi, Euon Jung Tak, Ji-Ho Yoo, Su-Won Jeong, Do-Yeon Kim, Warisa Ketphan, Su-Young Kim, Byung Woo Jhun, Jake Whang, Jin-Man Kim, Hyungjin Eoh, Jin-Woo Bae & Eun-Kyeong Jo
Article: 2073132
Published online: 17 May 2022
AbstractforArginine-mediated gut microbiome remodeling promotes host pulmonary immune defense against nontuberculous mycobacterial infection | Full Text | References | PDF (28.8 MB) | EPUB | Supplemental
  • 7633 Views
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Research Paper/Report

Article
The role of the mucin-glycan foraging Ruminococcus gnavus in the communication between the gut and the brain
Erika Coletto, Dimitrios Latousakis, Matthew G. Pontifex, Emmanuelle H. Crost, Laura Vaux, Estella Perez Santamarina, Andrew Goldson, Arlaine Brion, Mohammad K. Hajihosseini, David Vauzour, George M Savva & Nathalie Juge
Article: 2073784
Published online: 17 May 2022
AbstractforThe role of the mucin-glycan foraging Ruminococcus gnavus in the communication between the gut and the brain | Full Text | References | PDF (11.2 MB) | EPUB | Supplemental
  • 5063 Views
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Article
Periodontitis pathogen Porphyromonas gingivalis promotes pancreatic tumorigenesis via neutrophil elastase from tumor-associated neutrophils
Qin Tan, Xiao Ma, Bing Yang, Ye Liu, Yibin Xie, Xijun Wang, Wei Yuan & Jie Ma
Article: 2073785
Published online: 12 May 2022
AbstractforPeriodontitis pathogen Porphyromonas gingivalis promotes pancreatic tumorigenesis via neutrophil elastase from tumor-associated neutrophils | Full Text | References | PDF (15.2 MB) | EPUB | Supplemental
  • 7499 Views
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Research Paper

Article
Deficiency of PSRC1 accelerates atherosclerosis by increasing TMAO production via manipulating gut microbiota and flavin monooxygenase 3
Tiantian Luo, Zhigang Guo, Dan Liu, Zhongzhou Guo, Qiao Wu, Qinxian Li, Rongzhan Lin, Peier Chen, Caiwen Ou & Minsheng Chen
Article: 2077602
Published online: 25 May 2022
AbstractforDeficiency of PSRC1 accelerates atherosclerosis by increasing TMAO production via manipulating gut microbiota and flavin monooxygenase 3 | Full Text | References | PDF (7.7 MB) | EPUB | Supplemental
  • 4832 Views
  • 9 CrossRef citations
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Article
Interaction effect between NAFLD severity and high carbohydrate diet on gut microbiome alteration and hepatic de novo lipogenesis
Hyena Kang, Hyun Ju You, Giljae Lee, Seung Hyun Lee, Taekyeong Yoo, Murim Choi, Sae Kyung Joo, Jeong Hwan Park, Mee Soo Chang, Dong Hyeon Lee, Won Kim, GwangPyo Ko & Innovative Target Exploration of NAFLD (ITEN) consortium
Article: 2078612
Published online: 29 May 2022
AbstractforInteraction effect between NAFLD severity and high carbohydrate diet on gut microbiome alteration and hepatic de novo lipogenesis | Full Text | References | PDF (8.3 MB) | EPUB | Supplemental
  • 5488 Views
  • 14 CrossRef citations
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Review

Review
Revisiting the role of Akkermansia muciniphila as a therapeutic bacterium
Jiyeon Si, Hyena Kang, Hyun Ju You & GwangPyo Ko
Article: 2078619
Published online: 25 May 2022
AbstractforRevisiting the role of Akkermansia muciniphila as a therapeutic bacterium | Full Text | References | PDF (1.7 MB) | EPUB
  • 8209 Views
  • 23 CrossRef citations
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Research Paper

Article
Fecal microbiota and bile acids in IBD patients undergoing screening for colorectal cancer
Aonghus Lavelle, Stéphane Nancey, Jean-Marie Reimund, David Laharie, Philippe Marteau, Xavier Treton, Matthieu Allez, Xavier Roblin, Georgia Malamut, Cyriane Oeuvray, Nathalie Rolhion, Xavier Dray, Dominique Rainteau, Antonin Lamaziere, Emilie Gauliard, Julien Kirchgesner, Laurent Beaugerie, Philippe Seksik, Laurent Peyrin-Biroulet & Harry Sokol
Article: 2078620
Published online: 30 May 2022
AbstractforFecal microbiota and bile acids in IBD patients undergoing screening for colorectal cancer | Full Text | References | PDF (6.4 MB) | EPUB | Supplemental
  • 4747 Views
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Article
Species- and strain-level assessment using rrn long-amplicons suggests donor’s influence on gut microbial transference via fecal transplants in metabolic syndrome subjects
Alfonso Benítez-Páez, Annick V. Hartstra, Max Nieuwdorp & Yolanda Sanz
Article: 2078621
Published online: 23 May 2022
AbstractforSpecies- and strain-level assessment using rrn long-amplicons suggests donor’s influence on gut microbial transference via fecal transplants in metabolic syndrome subjects | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 3598 Views
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Article
Gut dysbiosis and the clinical spectrum in anti-Ro positive mothers of children with neonatal lupus
Robert M. Clancy, Miranda C. Marion, Hannah C. Ainsworth, Miao Chang, Timothy D. Howard, Peter M. Izmirly, Mala Masson, Jill P. Buyon & Carl D. Langefeld
Article: 2081474
Published online: 15 Jun 2022
AbstractforGut dysbiosis and the clinical spectrum in anti-Ro positive mothers of children with neonatal lupus | Full Text | References | PDF (928.5 KB) | EPUB | Supplemental
  • 2150 Views
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Brief Report

Brief Report
Flow cytometry can reliably capture gut microbial composition in healthy adults as well as dysbiosis dynamics in patients with aggressive B-cell non-Hodgkin lymphoma
Maren Schmiester, René Maier, René Riedel, Pawel Durek, Marco Frentsch, Stefan Kolling, Mir-Farzin Mashreghi, Robert Jenq, Liangliang Zhang, Christine B. Peterson, Lars Bullinger, Hyun-Dong Chang & Il-Kang Na
Article: 2081475
Published online: 29 May 2022
AbstractforFlow cytometry can reliably capture gut microbial composition in healthy adults as well as dysbiosis dynamics in patients with aggressive B-cell non-Hodgkin lymphoma | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 2816 Views
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Research Paper

Article
Gut microbiota transplantation drives the adoptive transfer of colonic genotype-phenotype characteristics between mice lacking catestatin and their wild type counterparts
Pamela González-Dávila, Markus Schwalbe, Arpit Danewalia, René Wardenaar, Boushra Dalile, Kristin Verbeke, Sushil K Mahata & Sahar El Aidy
Article: 2081476
Published online: 29 May 2022
AbstractforGut microbiota transplantation drives the adoptive transfer of colonic genotype-phenotype characteristics between mice lacking catestatin and their wild type counterparts | Full Text | References | PDF (14.2 MB) | EPUB | Supplemental
  • 4232 Views
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Article

Article
Dietary fiber-based regulation of bile salt hydrolase activity in the gut microbiota and its relevance to human disease
Arthur Kastl, Wenjing Zong, Victoria M. Gershuni, Elliot S. Friedman, Ceylan Tanes, Adoma Boateng, William J. Mitchell, Kathleen O’Connor, Kyle Bittinger, Natalie A. Terry, Christina Bales, Lindsey Albenberg & Gary D. Wu
Article: 2083417
Published online: 05 Jun 2022
AbstractforDietary fiber-based regulation of bile salt hydrolase activity in the gut microbiota and its relevance to human disease | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 4077 Views
  • 12 CrossRef citations
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Article
Gut microbiota in mucosa and feces of newly diagnosed, treatment-naïve adult inflammatory bowel disease and irritable bowel syndrome patients
Hana Čipčić Paljetak, Anja Barešić, Marina Panek, Mihaela Perić, Mario Matijašić, Ivana Lojkić, Ana Barišić, Darija Vranešić Bender, Dina Ljubas Kelečić, Marko Brinar, Mirjana Kalauz, Marija Miličević, Dora Grgić, Nikša Turk, Irena Karas, Silvija Čuković-Čavka, Željko Krznarić & Donatella Verbanac
Article: 2083419
Published online: 13 Jun 2022
AbstractforGut microbiota in mucosa and feces of newly diagnosed, treatment-naïve adult inflammatory bowel disease and irritable bowel syndrome patients | Full Text | References | PDF (5.7 MB) | EPUB | Supplemental
  • 4152 Views
  • 12 CrossRef citations
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Research Paper

Article
Fecal carriage of vanB antibiotic resistance gene affects adipose tissue function under vancomycin use
Lars M. M. Vliex, Giang N. Le, Marina Fassarella, Dorien Reijnders, Gijs H. Goossens, Erwin G. Zoetendal, John Penders & Ellen E. Blaak
Article: 2083905
Published online: 13 Jun 2022
AbstractforFecal carriage of vanB antibiotic resistance gene affects adipose tissue function under vancomycin use | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 2025 Views
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Article
Gut microbiota differs between treatment outcomes early after fecal microbiota transplantation against recurrent Clostridioides difficile infection
Shaodong Wei, Martin Iain Bahl, Simon Mark Dahl Baunwall, Jens Frederik Dahlerup, Christian Lodberg Hvas & Tine Rask Licht
Article: 2084306
Published online: 05 Jun 2022
AbstractforGut microbiota differs between treatment outcomes early after fecal microbiota transplantation against recurrent Clostridioides difficile infection | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 3330 Views
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Article
The interplay between PCOS pathology and diet on gut microbiota in a mouse model
Valentina Rodriguez Paris, Xin Yi Denise Wong, Samantha M Solon-Biet, Melissa C Edwards, Ali Aflatounian, Robert B Gilchrist, Stephen J Simpson, David J Handelsman, Nadeem O Kaakoush & Kirsty A Walters
Article: 2085961
Published online: 04 Jul 2022
AbstractforThe interplay between PCOS pathology and diet on gut microbiota in a mouse model | Full Text | References | PDF (11.9 MB) | EPUB | Supplemental
  • 8522 Views
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Article
Interactions among the mycobiome, bacteriome, inflammation, and diet in people living with HIV
María José Gosalbes, Nuria Jimenéz-Hernandéz, Elena Moreno, Alejandro Artacho, Xavier Pons, Sonia Ruíz-Pérez, Beatriz Navia, Vicente Estrada, Mónica Manzano, Alba Talavera-Rodriguez, Nadia Madrid, Alejandro Vallejo, Laura Luna, José A. Pérez-Molina, Santiago Moreno & Sergio Serrano-Villar
Article: 2089002
Published online: 23 Jun 2022
AbstractforInteractions among the mycobiome, bacteriome, inflammation, and diet in people living with HIV | Full Text | References | PDF (3.4 MB) | EPUB | Supplemental
  • 2732 Views
  • 7 CrossRef citations
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Article
Microbiota, not host origin drives ex vivo intestinal epithelial responses
Kaline Arnauts, Padhmanand Sudhakar, Sare Verstockt, Cynthia Lapierre, Selina Potche, Clara Caenepeel, Bram Verstockt, Jeroen Raes, Séverine Vermeire, João Sabino, Catherine Verfaillie & Marc Ferrante
Article: 2089003
Published online: 26 Jun 2022
AbstractforMicrobiota, not host origin drives ex vivo intestinal epithelial responses | Full Text | References | PDF (6.8 MB) | EPUB | Supplemental
  • 4283 Views
  • 7 CrossRef citations
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Article
Recovery of Bacteroides thetaiotaomicron ameliorates hepatic steatosis in experimental alcohol-related liver disease
Moris Sangineto, Christoph Grander, Felix Grabherr, Lisa Mayr, Barbara Enrich, Julian Schwärzler, Marcello Dallio, Vidyasagar Naik Bukke, Archana Moola, Antonio Moschetta, Timon E. Adolph, Carlo Sabbà, Gaetano Serviddio & Herbert Tilg
Article: 2089006
Published online: 03 Jul 2022
AbstractforRecovery of Bacteroides thetaiotaomicron ameliorates hepatic steatosis in experimental alcohol-related liver disease | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 4535 Views
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Open Access

Report

Brief Report
Salmonella enterica subsp. II serovar 4,5,12:a:- may cause gastroenteritis infections in humans
Meiying Yan, Yongming Zhou, Yang Cao, Zhenpeng Li, Xin Lu, Bo Pang, Shukun Wang & Biao Kan
Article: 2089007
Published online: 22 Jun 2022
AbstractforSalmonella enterica subsp. II serovar 4,5,12:a:- may cause gastroenteritis infections in humans | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 1744 Views
  • 3 CrossRef citations
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Research Paper

Article
Intestinal accumulation of microbiota-produced succinate caused by loss of microRNAs leads to diarrhea in weanling piglets
Xihong Zhou, Yonghui Liu, Xia Xiong, Jingqing Chen, Wenjie Tang, Liuqin He, Zhigang Zhang, Yulong Yin & Fengna Li
Article: 2091369
Published online: 26 Jun 2022
AbstractforIntestinal accumulation of microbiota-produced succinate caused by loss of microRNAs leads to diarrhea in weanling piglets | Full Text | References | PDF (6.9 MB) | EPUB | Supplemental
  • 4085 Views
  • 15 CrossRef citations
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Report

Brief Report
Campylobacter jejuni permeabilizes the host cell membrane by short chain lysophosphatidylethanolamines
Xuefeng Cao, Chris H.A. van de Lest, Liane Z.X. Huang, Jos P.M. van Putten & Marc M.S.M. Wösten
Article: 2091371
Published online: 07 Jul 2022
AbstractforCampylobacter jejuni permeabilizes the host cell membrane by short chain lysophosphatidylethanolamines | Full Text | References | PDF (6.8 MB) | EPUB | Supplemental
  • 1819 Views
  • 7 CrossRef citations
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Research Paper

Article
Improved gut microbiome recovery following drug therapy is linked to abundance and replication of probiotic strains
Jamie FitzGerald, Shriram Patel, Julia Eckenberger, Eric Guillemard, Patrick Veiga, Florent Schäfer, Jens Walter, Marcus J Claesson & Muriel Derrien
Article: 2094664
Published online: 02 Aug 2022
AbstractforImproved gut microbiome recovery following drug therapy is linked to abundance and replication of probiotic strains | Full Text | References | PDF (5.9 MB) | EPUB | Supplemental
  • 5620 Views
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Review

Review
Gut associated metabolites and their roles in Clostridioides difficile pathogenesis
Andrea Martinez Aguirre & Joseph A. Sorg
Article: 2094672
Published online: 04 Jul 2022
AbstractforGut associated metabolites and their roles in Clostridioides difficile pathogenesis | Full Text | References | PDF (2.5 MB) | EPUB
  • 3270 Views
  • 6 CrossRef citations
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Research Paper

Article
Quantitative insights into effects of intrapartum antibiotics and birth mode on infant gut microbiota in relation to well-being during the first year of life
Roosa Jokela, Katri Korpela, Ching Jian, Evgenia Dikareva, Anne Nikkonen, Terhi Saisto, Kirsi Skogberg, Willem M. de Vos, Kaija-Leena Kolho & Anne Salonen
Article: 2095775
Published online: 29 Sep 2022
AbstractforQuantitative insights into effects of intrapartum antibiotics and birth mode on infant gut microbiota in relation to well-being during the first year of life | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 2587 Views
  • 11 CrossRef citations
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Article
Obesity enriches for tumor protective microbial metabolites and treatment refractory cells to confer therapy resistance in PDAC
Kousik Kesh, Roberto Mendez, Beatriz Mateo-Victoriano, Vanessa T Garrido, Brittany Durden, Vineet K Gupta, Alfredo Oliveras Reyes, Nipun Merchant, Jashodeep Datta, Santanu Banerjee & Sulagna Banerjee
Article: 2096328
Published online: 11 Jul 2022
AbstractforObesity enriches for tumor protective microbial metabolites and treatment refractory cells to confer therapy resistance in PDAC | Full Text | References | PDF (28.3 MB) | EPUB | Supplemental
  • 3245 Views
  • 8 CrossRef citations
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Article
The intestinal microbial metabolite nicotinamide n-oxide prevents herpes simplex encephalitis via activating mitophagy in microglia
Feng Li, Yiliang Wang, Xiaowei Song, Zhaoyang Wang, Jiaoyan Jia, Shurong Qing, Lianzhou Huang, Yuan Wang, Shuai Wang, Zhe Ren, Kai Zheng & Yifei Wang
Article: 2096989
Published online: 06 Jul 2022
AbstractforThe intestinal microbial metabolite nicotinamide n-oxide prevents herpes simplex encephalitis via activating mitophagy in microglia | Full Text | References | PDF (17 MB) | EPUB | Supplemental
  • 4245 Views
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Article
The Mini Colon Model: a benchtop multi-bioreactor system to investigate the gut microbiome
Zijie Jin, Andy Ng, Corinne F. Maurice & David Juncker
Article: 2096993
Published online: 17 Jul 2022
AbstractforThe Mini Colon Model: a benchtop multi-bioreactor system to investigate the gut microbiome | Full Text | References | PDF (4.4 MB) | EPUB | Supplemental
  • 4289 Views
  • 6 CrossRef citations
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Article
Phospholipid metabolites of the gut microbiota promote hypoxia-induced intestinal injury via CD1d-dependent γδ T cells
Yuyu Li, Yuchong Wang, Fan Shi, Xujun Zhang, Yongting Zhang, Kefan Bi, Xuequn Chen, Lanjuan Li & Hongyan Diao
Article: 2096994
Published online: 27 Jul 2022
AbstractforPhospholipid metabolites of the gut microbiota promote hypoxia-induced intestinal injury via CD1d-dependent γδ T cells | Full Text | References | PDF (5.3 MB) | EPUB | Supplemental
  • 3647 Views
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Open Access

Review

Review Article
Impact of gut microbiome on skin health: gut-skin axis observed through the lenses of therapeutics and skin diseases
Md. Rayhan Mahmud, Sharmin Akter, Sanjida Khanam Tamanna, Lincon Mazumder, Israt Zahan Esti, Sanchita Banerjee, Sumona Akter, Md. Rakibul Hasan, Mrityunjoy Acharjee, Md. Sajjad Hossain & Anna Maria Pirttilä
Article: 2096995
Published online: 22 Jul 2022
AbstractforImpact of gut microbiome on skin health: gut-skin axis observed through the lenses of therapeutics and skin diseases | Full Text | References | PDF (4.6 MB) | EPUB
  • 27630 Views
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Open Access

Research Paper

Article
The interplay of gut microbiota between donors and recipients determines the efficacy of fecal microbiota transplantation
Ruiqiao He, Pan Li, Jinfeng Wang, Bota Cui, Faming Zhang & Fangqing Zhao
Article: 2100197
Published online: 19 Jul 2022
AbstractforThe interplay of gut microbiota between donors and recipients determines the efficacy of fecal microbiota transplantation | Full Text | References | PDF (5.4 MB) | EPUB | Supplemental
  • 6228 Views
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Open Access
Article
Alteration of the gut microbiota’s composition and metabolic output correlates with COVID-19-like severity in obese NASH hamsters
Valentin Sencio, Nicolas Benech, Cyril Robil, Lucie Deruyter, Séverine Heumel, Arnaud Machelart, Thierry Sulpice, Antonin Lamazière, Corinne Grangette, François Briand, Harry Sokol & François Trottein
Article: 2100200
Published online: 13 Jul 2022
AbstractforAlteration of the gut microbiota’s composition and metabolic output correlates with COVID-19-like severity in obese NASH hamsters | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 2767 Views
  • 8 CrossRef citations
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Open Access
Article
Effect of a bacteriocin-producing Streptococcus salivarius on the pathogen Fusobacterium nucleatum in a model of the human distal colon
Garreth W. Lawrence, Niamh McCarthy, Calum J. Walsh, Tais M. Kunyoshi, Elaine M. Lawton, Paula M. O’Connor, Máire Begley, Paul D. Cotter & Caitriona M. Guinane
Article: 2100203
Published online: 25 Jul 2022
AbstractforEffect of a bacteriocin-producing Streptococcus salivarius on the pathogen Fusobacterium nucleatum in a model of the human distal colon | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 3596 Views
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Open Access

Review

Review
Microbiota-derived metabolites as drivers of gut–brain communication
Hany Ahmed, Quentin Leyrolle, Ville Koistinen, Olli Kärkkäinen, Sophie Layé, Nathalie Delzenne & Kati Hanhineva
Article: 2102878
Published online: 28 Jul 2022
AbstractforMicrobiota-derived metabolites as drivers of gut–brain communication | Full Text | References | PDF (4.5 MB) | EPUB
  • 15557 Views
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Open Access

Research Paper

Article
A decrease in functional microbiomes represented as Faecalibacterium affects immune homeostasis in long-term stable liver transplant patients
Soon Kyu Lee, JooYeon Jhun, Seung Yoon Lee, Sukjung Choi, Sun Shim Choi, Myeong Soo Park, Seon-Young Lee, Keun-Hyung Cho, A Ram Lee, Joseph Ahn, Ho Joong Choi, Young Kyoung You, Pil Soo Sung, Jeong Won Jang, Si Hyun Bae, Seung Kew Yoon, Mi-La Cho & Jong Young Choi
Article: 2102885
Published online: 11 Aug 2022
AbstractforA decrease in functional microbiomes represented as Faecalibacterium affects immune homeostasis in long-term stable liver transplant patients | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 2911 Views
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Open Access
Article
Low abundance members of the gut microbiome exhibit high immunogenicity
Geongoo Han, Hien Luong & Shipra Vaishnava
Article: 2104086
Published online: 26 Jul 2022
AbstractforLow abundance members of the gut microbiome exhibit high immunogenicity | Full Text | References | PDF (4.9 MB) | EPUB | Supplemental
  • 3027 Views
  • 4 CrossRef citations
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Open Access
Article
Invariant natural killer T cells minimally influence gut microbiota composition in mice
Qiaochu Lin, Meggie Kuypers, Zhewei Liu, Julia K Copeland, Donny Chan, Susan J Robertson, Jean Kontogiannis, David S Guttman, E. Kate Banks, Dana J Philpott & Thierry Mallevaey
Article: 2104087
Published online: 31 Jul 2022
AbstractforInvariant natural killer T cells minimally influence gut microbiota composition in mice | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 1831 Views
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Article
Gut dysbiosis impairs hippocampal plasticity and behaviors by remodeling serum metabolome
Guoqiang Liu, Quntao Yu, Bo Tan, Xiao Ke, Chen Zhang, Hao Li, Tongmei Zhang & Youming Lu
Article: 2104089
Published online: 24 Jul 2022
AbstractforGut dysbiosis impairs hippocampal plasticity and behaviors by remodeling serum metabolome | Full Text | References | PDF (29.2 MB) | EPUB | Supplemental
  • 6251 Views
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Report

Brief Report
Gut bacteria interact directly with colonic mast cells in a humanized mouse model of IBS
Chiko Shimbori, Giada De Palma, Lauren Baerg, Jun Lu, Elena F. Verdu, David E. Reed, Stephen Vanner, Stephen M. Collins & Premysl Bercik
Article: 2105095
Published online: 29 Jul 2022
AbstractforGut bacteria interact directly with colonic mast cells in a humanized mouse model of IBS | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
  • 3824 Views
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Open Access

Research Paper

Article
Postnatal exposure to ambient air pollutants is associated with the composition of the infant gut microbiota at 6-months of age
Maximilian J. Bailey, Elizabeth A. Holzhausen, Zachariah E. M. Morgan, Noopur Naik, Justin P. Shaffer, Donghai Liang, Howard H. Chang, Jeremy Sarnat, Shan Sun, Paige K. Berger, Kelsey A. Schmidt, Frederick Lurmann, Michael I. Goran & Tanya L. Alderete
Article: 2105096
Published online: 13 Aug 2022
AbstractforPostnatal exposure to ambient air pollutants is associated with the composition of the infant gut microbiota at 6-months of age | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
  • 6541 Views
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Open Access
Article
Helicobacter pylori actively suppresses innate immune nucleic acid receptors
Samuel D.R. Dooyema, Jennifer M. Noto, Lydia E. Wroblewski, M. Blanca Piazuelo, Uma Krishna, Giovanni Suarez, Judith Romero-Gallo, Alberto G. Delgado & Richard M. Peek
Article: 2105102
Published online: 29 Jul 2022
AbstractforHelicobacter pylori actively suppresses innate immune nucleic acid receptors | Full Text | References | PDF (52.8 MB) | EPUB | Supplemental
  • 3442 Views
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Open Access
Article
Gut microbiota-derived metabolites confer protection against SARS-CoV-2 infection
Julia A. Brown, Katherine Z. Sanidad, Serena Lucotti, Carolin M. Lieber, Robert M. Cox, Aparna Ananthanarayanan, Srijani Basu, Justin Chen, Mengrou Shan, Mohammed Amir, Fabian Schmidt, Yiska Weisblum, Michele Cioffi, Tingting Li, Florencia Madorsky Rowdo, M. Laura Martin, Chun-Jun Guo, Costas A. Lyssiotis, Brian T. Layden, Andrew J. Dannenberg, Paul D. Bieniasz, Benhur Lee, Naohiro Inohara, Irina Matei, Richard K. Plemper & Melody Y. Zeng
Article: 2105609
Published online: 01 Aug 2022
AbstractforGut microbiota-derived metabolites confer protection against SARS-CoV-2 infection | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 5980 Views
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Open Access

Review

Review
Bacterial-fungal metabolic interactions within the microbiota and their potential relevance in human health and disease: a short review
Alexia Lapiere & Mathias L Richard
Article: 2105610
Published online: 28 Jul 2022
AbstractforBacterial-fungal metabolic interactions within the microbiota and their potential relevance in human health and disease: a short review | Full Text | References | PDF (1.5 MB) | EPUB
  • 3380 Views
  • 10 CrossRef citations
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Open Access

Research Paper

Article
Butyrate acts through HDAC inhibition to enhance aryl hydrocarbon receptor activation by gut microbiota-derived ligands
Morgane Modoux, Nathalie Rolhion, Jeremie H. Lefevre, Cyriane Oeuvray, Petr Nádvorník, Peter Illes, Patrick Emond, Yann Parc, Sridhar Mani, Zdenek Dvorak & Harry Sokol
Article: 2105637
Published online: 27 Jul 2022
AbstractforButyrate acts through HDAC inhibition to enhance aryl hydrocarbon receptor activation by gut microbiota-derived ligands | Full Text | References | PDF (5.5 MB) | EPUB | Supplemental
  • 5344 Views
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Open Access
Article
Fecal Metabolome and Bacterial Composition in Severe Obesity: Impact of Diet and Bariatric Surgery
Nuria Salazar, Manuel Ponce-Alonso, María Garriga, Sergio Sanchez-Carrillo, Ana María Hernández-Barranco, Begoña Redruello, María Fernández, José Ignacio Botella-Carretero, Belén Vega-Piñero, Javier Galeano, Javier Zamora, Manuel Ferrer, Clara G de Los Reyes-Gavilán & Rosa Del Campo
Article: 2106102
Published online: 28 Jul 2022
AbstractforFecal Metabolome and Bacterial Composition in Severe Obesity: Impact of Diet and Bariatric Surgery | Full Text | References | PDF (8.6 MB) | EPUB | Supplemental
  • 2997 Views
  • 12 CrossRef citations
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Open Access
Article
Modeling spatial interaction networks of the gut microbiota
Xiaocang Cao, Ang Dong, Guangbo Kang, Xiaoli Wang, Liyun Duan, Huixing Hou, Tianming Zhao, Shuang Wu, Xinjuan Liu, He Huang & Rongling Wu
Article: 2106103
Published online: 03 Aug 2022
AbstractforModeling spatial interaction networks of the gut microbiota | Full Text | References | PDF (15.8 MB) | EPUB | Supplemental
  • 2877 Views
  • 6 CrossRef citations
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Article
A virulence factor as a therapeutic: the probiotic Enterococcus faecium SF68 arginine deiminase inhibits innate immune signaling pathways
Fereshteh Ghazisaeedi, Jochen Meens, Bianca Hansche, Sven Maurischat, Peter Schwerk, Ralph Goethe, Lothar H. Wieler, Marcus Fulde & Karsten Tedin
Article: 2106105
Published online: 03 Aug 2022
AbstractforA virulence factor as a therapeutic: the probiotic Enterococcus faecium SF68 arginine deiminase inhibits innate immune signaling pathways | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 2841 Views
  • 9 CrossRef citations
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Open Access
Article
The landscape in the gut microbiome of long-lived families reveals new insights on longevity and aging – relevant neural and immune function
Jingjing Wang, Jinlong Qie, Danrong Zhu, Xuemei Zhang, Qingqing Zhang, Yuyu Xu, Yipeng Wang, Kai Mi, Yang Pei, Yang Liu, Guozhong Ji & Xingyin Liu
Article: 2107288
Published online: 08 Aug 2022
AbstractforThe landscape in the gut microbiome of long-lived families reveals new insights on longevity and aging – relevant neural and immune function | Full Text | References | PDF (12.7 MB) | EPUB | Supplemental
  • 6831 Views
  • 12 CrossRef citations
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Open Access
Article
Metagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate
Joshua B. Simpson, Josh J. Sekela, Amanda L. Graboski, Valentina B. Borlandelli, Marissa M. Bivins, Natalie K. Barker, Alicia A. Sorgen, Angie L. Mordant, Rebecca L. Johnson, Aadra P. Bhatt, Anthony A. Fodor, Laura E. Herring, Hermen Overkleeft, John R. Lee & Matthew. R. Redinbo
Article: 2107289
Published online: 11 Aug 2022
AbstractforMetagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate | Full Text | References | PDF (5.1 MB) | EPUB | Supplemental
  • 3209 Views
  • 6 CrossRef citations
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Open Access

Review

Review
Approaches to discern if microbiome associations reflect causation in metabolic and immune disorders
Marijana Basic, Dominique Dardevet, Peter Michael Abuja, Silvia Bolsega, Stéphanie Bornes, Robert Caesar, Francesco Maria Calabrese, Massimo Collino, Maria De Angelis, Philippe Gérard, Miguel Gueimonde, François Leulier, Eva Untersmayr, Evelien Van Rymenant, Paul De Vos & Isabelle Savary-Auzeloux
Article: 2107386
Published online: 08 Aug 2022
AbstractforApproaches to discern if microbiome associations reflect causation in metabolic and immune disorders | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 3602 Views
  • 5 CrossRef citations
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Open Access

Research Paper

Article
Cholecystectomy-induced secondary bile acids accumulation ameliorates colitis through inhibiting monocyte/macrophage recruitment
Yun Liu, Jun Xu, Xinhua Ren, Yu Zhang, Ziliang Ke, Jianhua Zhou, Yang Wang, Yifan Zhang & Yulan Liu
Article: 2107387
Published online: 01 Sep 2022
AbstractforCholecystectomy-induced secondary bile acids accumulation ameliorates colitis through inhibiting monocyte/macrophage recruitment | Full Text | References | PDF (15.4 MB) | EPUB | Supplemental
  • 4112 Views
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Open Access

Review

Article
Novel technologies to characterize and engineer the microbiome in inflammatory bowel disease
Alba Boix-Amorós, Hilary Monaco, Elisa Sambataro & Jose C. Clemente
Article: 2107866
Published online: 14 Sep 2022
AbstractforNovel technologies to characterize and engineer the microbiome in inflammatory bowel disease | Full Text | References | PDF (922 KB) | EPUB
  • 2734 Views
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Open Access

Letter to the editor

Fecal β-glucuronidase activity differs between hematopoietic cell and kidney transplantation and a possible mechanism for disparate dose requirements
Mohammad Haneef Khan, Guillaume C. Onyeaghala, Armin Rashidi, Shernan G. Holtan, Alexander Khoruts, Ajay Israni, Pamala A. Jacobson & Christopher Staley
Article: 2108279
Published online: 03 Aug 2022
AbstractforFecal β-glucuronidase activity differs between hematopoietic cell and kidney transplantation and a possible mechanism for disparate dose requirements | Full Text | References | PDF (481.2 KB) | EPUB
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Research Paper

Article
Fatty acids produced by the gut microbiota dampen host inflammatory responses by modulating intestinal SUMOylation
Chaima Ezzine, Léa Loison, Nadine Montbrion, Christine Bôle-Feysot, Pierre Déchelotte, Moïse Coëffier & David Ribet
Article: 2108280
Published online: 17 Aug 2022
AbstractforFatty acids produced by the gut microbiota dampen host inflammatory responses by modulating intestinal SUMOylation | Full Text | References | PDF (4.1 MB) | EPUB | Supplemental
  • 3382 Views
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Report

Brief Report
A single cell survey of the microbial impacts on the mouse small intestinal epithelium
Derek K.L. Tsang, Ryan J. Wang, Oliver De Sa, Arshad Ayyaz, Elisabeth G. Foerster, Giuliano Bayer, Shawn Goyal, Daniel Trcka, Bibaswan Ghoshal, Jeffrey L. Wrana, Stephen E. Girardin & Dana J. Philpott
Article: 2108281
Published online: 08 Aug 2022
AbstractforA single cell survey of the microbial impacts on the mouse small intestinal epithelium | Full Text | References | PDF (9.2 MB) | EPUB | Supplemental
  • 5428 Views
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Review

Review Article
The double-edged sword of probiotic supplementation on gut microbiota structure in Helicobacter pylori management
Ali Nabavi-Rad, Amir Sadeghi, Hamid Asadzadeh Aghdaei, Abbas Yadegar, Sinéad Marian Smith & Mohammad Reza Zali
Article: 2108655
Published online: 11 Aug 2022
AbstractforThe double-edged sword of probiotic supplementation on gut microbiota structure in Helicobacter pylori management | Full Text | References | PDF (3.5 MB) | EPUB
  • 29936 Views
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Letter to the editor

Primers matter: Influence of the primer selection on human fungal detection using high throughput sequencing
Crispin Wiesmann, Konrad Lehr, Juozas Kupcinskas, Ramiro Vilchez-Vargas & Alexander Link
Article: 2110638
Published online: 21 Aug 2022
AbstractforPrimers matter: Influence of the primer selection on human fungal detection using high throughput sequencing | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
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Research Paper/Report

Article
Akkermansia muciniphila upregulates genes involved in maintaining the intestinal barrier function via ADP-heptose-dependent activation of the ALPK1/TIFA pathway
Camille Martin-Gallausiaux, Diego Garcia-Weber, Amandine Lashermes, Pierre Larraufie, Ludovica Marinelli, Veronica Teixeira, Alice Rolland, Fabienne Béguet-Crespel, Vincent Brochard, Timothé Quatremare, Alexandre Jamet, Joël Doré, Scott D. Gray-Owen, Hervé M. Blottière, Cécile Arrieumerlou & Nicolas Lapaque
Article: 2110639
Published online: 28 Aug 2022
AbstractforAkkermansia muciniphila upregulates genes involved in maintaining the intestinal barrier function via ADP-heptose-dependent activation of the ALPK1/TIFA pathway | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 4255 Views
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Review

Review Article
Use of genetically modified lactic acid bacteria and bifidobacteria as live delivery vectors for human and animal health
Romina Levit, Naima G. Cortes-Perez, Alejandra de Moreno de Leblanc, Jade Loiseau, Anne Aucouturier, Philippe Langella, Jean Guy LeBlanc & Luis G. Bermúdez-Humarán
Article: 2110821
Published online: 12 Aug 2022
AbstractforUse of genetically modified lactic acid bacteria and bifidobacteria as live delivery vectors for human and animal health | Full Text | References | PDF (2.2 MB) | EPUB
  • 4128 Views
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Review Article
Regulation of flagellar motility and biosynthesis in enterohemorrhagic Escherichia coli O157:H7
Hongmin Sun, Min Wang, Yutao Liu, Pan Wu, Ting Yao, Wen Yang, Qian Yang, Jun Yan & Bin Yang
Article: 2110822
Published online: 16 Aug 2022
AbstractforRegulation of flagellar motility and biosynthesis in enterohemorrhagic Escherichia coli O157:H7 | Full Text | References | PDF (2.3 MB) | EPUB
  • 3260 Views
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Research Paper

Article
Dual RNA-seq reveals a type 6 secretion system-dependent blockage of TNF-α signaling and BicA as a Burkholderia pseudomallei virulence factor important during gastrointestinal infection
Javier I. Sanchez-Villamil, Daniel Tapia, Nittaya Khakhum, Steven G. Widen & Alfredo G. Torres
Article: 2111950
Published online: 19 Aug 2022
AbstractforDual RNA-seq reveals a type 6 secretion system-dependent blockage of TNF-α signaling and BicA as a Burkholderia pseudomallei virulence factor important during gastrointestinal infection | Full Text | References | PDF (5.1 MB) | EPUB | Supplemental
  • 2170 Views
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Article
Gut-derived bacterial flagellin induces beta-cell inflammation and dysfunction
Torsten P.M. Scheithauer, Hilde Herrema, Hongbing Yu, Guido J. Bakker, Maaike Winkelmeijer, Galina Soukhatcheva, Derek Dai, Caixia Ma, Stefan R. Havik, Manon Balvers, Mark Davids, Abraham S. Meijnikman, Ömrüm Aydin, Bert-Jan H. van den Born, Marc G. Besselink, Olivier R. Busch, Maurits de Brauw, Arnold van de Laar, Clara Belzer, Martin Stahl, Willem M. de Vos, Bruce A. Vallance, Max Nieuwdorp, C. Bruce Verchere & Daniël H. van Raalte
Article: 2111951
Published online: 19 Aug 2022
AbstractforGut-derived bacterial flagellin induces beta-cell inflammation and dysfunction | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 2773 Views
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Review

Review Article
Type 2 diabetes, gut microbiome, and systems biology: A novel perspective for a new era
Yoscelina Estrella Martínez-López, Diego A. Esquivel-Hernández, Jean Paul Sánchez-Castañeda, Daniel Neri-Rosario, Rodolfo Guardado-Mendoza & Osbaldo Resendis-Antonio
Article: 2111952
Published online: 24 Aug 2022
AbstractforType 2 diabetes, gut microbiome, and systems biology: A novel perspective for a new era | Full Text | References | PDF (3.2 MB) | EPUB | Supplemental
  • 5311 Views
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Report

Brief Report
Intestinal microbiota modulates pancreatic carcinogenesis through intratumoral natural killer cells
Qin Yu, Rachel C. Newsome, Mark Beveridge, Maria C. Hernandez, Raad Z. Gharaibeh, Christian Jobin & Ryan M. Thomas
Article: 2112881
Published online: 18 Aug 2022
AbstractforIntestinal microbiota modulates pancreatic carcinogenesis through intratumoral natural killer cells | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 3658 Views
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Research Paper

Article
Intestinal TLR4 deletion exacerbates acute pancreatitis through gut microbiota dysbiosis and Paneth cells deficiency
Mei Qi-Xiang, Fu Yang, Huang Ze-Hua, Yin Nuo-Ming, Wang Rui-Long, Xu Bin-Qiang, Fan Jun-Jie, Huang Chun-Lan & Zeng Yue
Article: 2112882
Published online: 18 Aug 2022
AbstractforIntestinal TLR4 deletion exacerbates acute pancreatitis through gut microbiota dysbiosis and Paneth cells deficiency | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
  • 5309 Views
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Review

Review Article
Intestinal phages interact with bacteria and are involved in human diseases
Han Shuwen & Ding Kefeng
Article: 2113717
Published online: 29 Aug 2022
AbstractforIntestinal phages interact with bacteria and are involved in human diseases | Full Text | References | PDF (3.8 MB) | EPUB
  • 13525 Views
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Report

Brief Report
The human gut serves as a reservoir of hypervirulent Klebsiella pneumoniae
Jing Yang, Yi Li, Na Tang, Juan Li, Juan Zhou, Shan Lu, Gui Zhang, Yuqin Song, Chao Wang, Jin Zhong, Jianguo Xu & Jie Feng
Article: 2114739
Published online: 24 Aug 2022
AbstractforThe human gut serves as a reservoir of hypervirulent Klebsiella pneumoniae | Full Text | References | PDF (504.6 KB) | EPUB | Supplemental
  • 2835 Views
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Research Paper

Article
Preexisting antibodies targeting SARS-CoV-2 S2 cross-react with commensal gut bacteria and impact COVID-19 vaccine induced immunity
Liqiu Jia, Shufeng Weng, Jing Wu, Xiangxiang Tian, Yifan Zhang, Xuyang Wang, Jing Wang, Dongmei Yan, Wanhai Wang, Fang Fang, Zhaoqin Zhu, Chao Qiu, Wenhong Zhang, Ying Xu & Yanmin Wan
Article: 2117503
Published online: 13 Sep 2022
AbstractforPreexisting antibodies targeting SARS-CoV-2 S2 cross-react with commensal gut bacteria and impact COVID-19 vaccine induced immunity | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
  • 2394 Views
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Article
Bezlotoxumab prevents extraintestinal organ damage induced by Clostridioides difficile infection
Steven J. Mileto, Melanie L. Hutton, Sarah L. Walton, Antariksh Das, Lisa J. Ioannidis, Don Ketagoda, Kylie M. Quinn, Kate M. Denton, Diana S. Hansen & Dena Lyras
Article: 2117504
Published online: 31 Aug 2022
AbstractforBezlotoxumab prevents extraintestinal organ damage induced by Clostridioides difficile infection | Full Text | References | PDF (5.3 MB) | EPUB | Supplemental
  • 3343 Views
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Review

Review Article
The clinical evidence for postbiotics as microbial therapeutics
Alexis Mosca, Ana Teresa Abreu Y Abreu, Kok Ann Gwee, Gianluca Ianiro, Jan Tack, Thi Viet Ha Nguyen & Colin Hill
Article: 2117508
Published online: 02 Oct 2022
AbstractforThe clinical evidence for postbiotics as microbial therapeutics | Full Text | References | PDF (824 KB) | EPUB
  • 8955 Views
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Research Paper

Article
Gut microbiota mediates the inhibition of lymphopoiesis in dietary-restricted mice by suppressing glycolysis
Si Tao, Yiting Wang, Chenghui Yu, Rongrong Qiu, Yanjun Jiang, Jie Jia, Zhendong Tao, Liu Zhang, Bing Zou & Duozhuang Tang
Article: 2117509
Published online: 01 Sep 2022
AbstractforGut microbiota mediates the inhibition of lymphopoiesis in dietary-restricted mice by suppressing glycolysis | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 1974 Views
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Open Access

Methods

Article
Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods
Kenneth Lindstedt, Dorota Buczek, Torunn Pedersen, Erik Hjerde, Niclas Raffelsberger, Yutaka Suzuki, Sylvain Brisse, Kathryn Holt, Ørjan Samuelsen & Arnfinn Sundsfjord
Article: 2118500
Published online: 31 Aug 2022
AbstractforDetection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 3975 Views
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Review

Review Article
Infant gut microbiota restoration: state of the art
Katri Korpela & Willem M. de Vos
Article: 2118811
Published online: 10 Sep 2022
AbstractforInfant gut microbiota restoration: state of the art | Full Text | References | PDF (799.1 KB) | EPUB | Supplemental
  • 4626 Views
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Research Paper

Article
High throughput genome scale modeling predicts microbial vitamin requirements contribute to gut microbiome community structure
Juan P. Molina Ortiz, Mark Norman Read, Dale David McClure, Andrew Holmes, Fariba Dehghani & Erin Rose Shanahan
Article: 2118831
Published online: 08 Sep 2022
AbstractforHigh throughput genome scale modeling predicts microbial vitamin requirements contribute to gut microbiome community structure | Full Text | References | PDF (8.2 MB) | EPUB | Supplemental
  • 2860 Views
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Article
Microbiota manipulation to increase macrophage IL-10 improves colitis and limits colitis-associated colorectal cancer
Daniel F. Zegarra Ruiz, Dasom V. Kim, Kendra Norwood, Fatima B. Saldana-Morales, Myunghoo Kim, Charles Ng, Ryann Callaghan, Maisha Uddin, Lin-Chun Chang, Randy S. Longman & Gretchen E. Diehl
Article: 2119054
Published online: 04 Sep 2022
AbstractforMicrobiota manipulation to increase macrophage IL-10 improves colitis and limits colitis-associated colorectal cancer | Full Text | References | PDF (4.4 MB) | EPUB | Supplemental
  • 5143 Views
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Article
Gut microbiota modulate radiotherapy-associated antitumor immune responses against hepatocellular carcinoma Via STING signaling
Zongjuan Li, Yang Zhang, Weifeng Hong, Biao Wang, Yixing Chen, Ping Yang, Jian Zhou, Jia Fan, Zhaochong Zeng & Shisuo Du
Article: 2119055
Published online: 10 Sep 2022
AbstractforGut microbiota modulate radiotherapy-associated antitumor immune responses against hepatocellular carcinoma Via STING signaling | Full Text | References | PDF (7.3 MB) | EPUB | Supplemental
  • 6111 Views
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Article
Short-term supplementation with ω-3 polyunsaturated fatty acids modulates primarily mucolytic species from the gut luminal mucin niche in a human fermentation system
Charlène Roussel, Sara Anunciação Braga Guebara, Pier-Luc Plante, Yves Desjardins, Vincenzo Di Marzo & Cristoforo Silvestri
Article: 2120344
Published online: 15 Sep 2022
AbstractforShort-term supplementation with ω-3 polyunsaturated fatty acids modulates primarily mucolytic species from the gut luminal mucin niche in a human fermentation system | Full Text | References | PDF (7.8 MB) | EPUB | Supplemental
  • 2807 Views
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Systematic Review

Review Article
The association between early life antibiotic exposure and the gut resistome of young children: a systematic review
Rebecca M. Lebeaux, Despina B. Karalis, Jihyun Lee, Hanna C. Whitehouse, Juliette C. Madan, Margaret R. Karagas & Anne G. Hoen
Article: 2120743
Published online: 26 Oct 2022
AbstractforThe association between early life antibiotic exposure and the gut resistome of young children: a systematic review | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 1953 Views
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Research Paper

Article
Deoxycholic acid induces gastric intestinal metaplasia by activating STAT3 signaling and disturbing gastric bile acids metabolism and microbiota
Duochen Jin, Keting Huang, Miao Xu, Hongjin Hua, Feng Ye, Jin Yan, Guoxin Zhang & Yun Wang
Article: 2120744
Published online: 06 Sep 2022
AbstractforDeoxycholic acid induces gastric intestinal metaplasia by activating STAT3 signaling and disturbing gastric bile acids metabolism and microbiota | Full Text | References | PDF (11.6 MB) | EPUB | Supplemental
  • 6133 Views
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Review

Review Article
Biomaterials for Helicobacter pylori therapy: therapeutic potential and future perspectives
Yongkang Lai, Wei Wei, Yiqi Du, Jie Gao & Zhaoshen Li
Article: 2120747
Published online: 07 Sep 2022
AbstractforBiomaterials for Helicobacter pylori therapy: therapeutic potential and future perspectives | Full Text | References | PDF (6.8 MB) | EPUB
  • 4673 Views
  • 9 CrossRef citations
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Research Paper

Article
Increasing adherence to the Mediterranean diet and lifestyle is associated with reduced fecal calprotectin and intra-individual changes in microbial composition of healthy subjects
L. Godny, L. Reshef, T. Sharar Fischler, S. Elial-Fatal, T. Pfeffer-Gik, B. Raykhel, K. Rabinowitz, A. Levi-Barda, TT. Perets, R. Barkan, I. Goren, JE. Ollech, H. Yanai, U. Gophna & I. Dotan
Article: 2120749
Published online: 13 Oct 2022
AbstractforIncreasing adherence to the Mediterranean diet and lifestyle is associated with reduced fecal calprotectin and intra-individual changes in microbial composition of healthy subjects | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 7322 Views
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Review

Review
Host-mycobiome metabolic interactions in health and disease
Neelu Begum, Azadeh Harzandi, Sunjae Lee, Mathias Uhlen, David L. Moyes & Saeed Shoaie
Article: 2121576
Published online: 24 Sep 2022
AbstractforHost-mycobiome metabolic interactions in health and disease | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 2904 Views
  • 6 CrossRef citations
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Research Paper

Article
The cnf1 gene is associated with an expanding Escherichia coli ST131 H30Rx/C2 subclade and confers a competitive advantage for gut colonization
Landry L. Tsoumtsa Meda, Luce Landraud, Serena Petracchini, Stéphane Descorps-Declere, Emeline Perthame, Marie-Anne Nahori, Laura Ramirez Finn, Molly A. Ingersoll, Rafael Patiño-Navarrete, Philippe Glaser, Richard Bonnet, Olivier Dussurget, Erick Denamur, Amel Mettouchi & Emmanuel Lemichez
Article: 2121577
Published online: 25 Sep 2022
AbstractforThe cnf1 gene is associated with an expanding Escherichia coli ST131 H30Rx/C2 subclade and confers a competitive advantage for gut colonization | Full Text | References | PDF (4.6 MB) | EPUB | Supplemental
  • 2042 Views
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Article
Limosilactobacillus reuteri DS0384 promotes intestinal epithelial maturation via the postbiotic effect in human intestinal organoids and infant mice
Hana Lee, Kwang Bo Jung, Ohman Kwon, Ye Seul Son, Eunho Choi, Won Dong Yu, Naeun Son, Jun Hyoung Jeon, Hana Jo, Haneol Yang, Yeong Rak Son, Chan-Seok Yun, Hyun-Soo Cho, Sang Kyu Kim, Dae-Soo Kim, Doo-Sang Park & Mi-Young Son
Article: 2121580
Published online: 21 Sep 2022
AbstractforLimosilactobacillus reuteri DS0384 promotes intestinal epithelial maturation via the postbiotic effect in human intestinal organoids and infant mice | Full Text | References | PDF (12.6 MB) | EPUB | Supplemental
  • 5303 Views
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Open Access

Correction

Correction
Correction
Article: 2122349
Published online: 22 Sep 2022
CitationforCorrection | Full Text | PDF (1 MB) | EPUB
  • 427 Views
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Correction
Correction
Article: 2122351
Published online: 21 Sep 2022
CitationforCorrection | Full Text | PDF (153.7 KB) | EPUB
  • 385 Views
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Research Paper

Article
Apyrase decreases phage induction and Shiga toxin release from E. coli O157:H7 and has a protective effect during infection
Ida Arvidsson, Ashmita Tontanahal, Karl Johansson, Ann-Charlotte Kristoffersson, Sára Kellnerová, Michael Berger, Ulrich Dobrindt & Diana Karpman
Article: 2122667
Published online: 22 Sep 2022
AbstractforApyrase decreases phage induction and Shiga toxin release from E. coli O157:H7 and has a protective effect during infection | Full Text | References | PDF (7.9 MB) | EPUB | Supplemental
  • 1281 Views
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Article
The probiotic Bacillus subtilis BS50 decreases gastrointestinal symptoms in healthy adults: a randomized, double-blind, placebo-controlled trial
Sean M. Garvey, Eunice Mah, Traci M. Blonquist, Valerie N. Kaden & Jessica L. Spears
Article: 2122668
Published online: 21 Oct 2022
AbstractforThe probiotic Bacillus subtilis BS50 decreases gastrointestinal symptoms in healthy adults: a randomized, double-blind, placebo-controlled trial | Full Text | References | PDF (583.3 KB) | EPUB | Supplemental
  • 6668 Views
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Article
Altered microbial biogeography in an innate model of colitis
Antonia Boger-May, Theodore Reed, Diana LaTorre, Katelyn Ruley-Haase, Hunter Hoffman, Lauren English, Connor Roncagli, Anne-Marie Overstreet & David Boone
Article: 2123677
Published online: 26 Sep 2022
AbstractforAltered microbial biogeography in an innate model of colitis | Full Text | References | PDF (9.5 MB) | EPUB
  • 2309 Views
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Article
Rural environment reduces allergic inflammation by modulating the gut microbiota
Zhaowei Yang, Zhong Chen, Xinliu Lin, Siyang Yao, Mo Xian, Xiaoping Ning, Wanyi Fu, Mei Jiang, Naijian Li, Xiaojun Xiao, Mulin Feng, Zexuan Lian, Wenqing Yang, Xia Ren, Zhenyu Zheng, Jiefeng Zhao, Nili Wei, Wenju Lu, Marjut Roponen, Bianca Schaub, Gary W. K. Wong, Zhong Su, Charles Wang & Jing Li
Article: 2125733
Published online: 04 Oct 2022
AbstractforRural environment reduces allergic inflammation by modulating the gut microbiota | Full Text | References | PDF (5.5 MB) | EPUB | Supplemental
  • 3321 Views
  • 9 CrossRef citations
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Commentary and Views

Article Commentary
Not just a gut feeling: a deep exploration of functional bacterial metabolites that can modulate host health
Andrew Gold & Jiangjiang Zhu
Article: 2125734
Published online: 20 Sep 2022
AbstractforNot just a gut feeling: a deep exploration of functional bacterial metabolites that can modulate host health | Full Text | References | PDF (2.8 MB) | EPUB
  • 2588 Views
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Research Paper

Article
Visualizing germination of microbiota endospores in the mammalian gut
Ningning Xu, Liyuan Lin, Yahui Du, Huibin Lin, Jia Song, Chaoyong Yang & Wei Wang
Article: 2125737
Published online: 29 Sep 2022
AbstractforVisualizing germination of microbiota endospores in the mammalian gut | Full Text | References | PDF (9.9 MB) | EPUB | Supplemental
  • 2685 Views
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Review

Review
Regulation of microglial physiology by the microbiota
James Cook & Marco Prinz
Article: 2125739
Published online: 24 Sep 2022
AbstractforRegulation of microglial physiology by the microbiota | Full Text | References | PDF (1.3 MB) | EPUB
  • 3080 Views
  • 11 CrossRef citations
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Research Paper

Article
Gut metagenomic characteristics of ADHD reveal low Bacteroides ovatus-associated host cognitive impairment
Yan Li, Haiting Sun, Yufen Huang, Anqi Yin, Linjuan Zhang, Jiao Han, Yixuan Lyu, Xiangzhao Xu, Yifang Zhai, Huan Sun, Ping Wang, Jinyang Zhao, Silong Sun, Hailong Dong, Feng Zhu, Qiang Wang, Luis Augusto Rohde, Xuefeng Xie, Xin Sun & Lize Xiong
Article: 2125747
Published online: 20 Sep 2022
AbstractforGut metagenomic characteristics of ADHD reveal low Bacteroides ovatus-associated host cognitive impairment | Full Text | References | PDF (7.1 MB) | EPUB | Supplemental
  • 4143 Views
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Article
Periodontitis-related salivary microbiota aggravates Alzheimer’s disease via gut-brain axis crosstalk
Jiangyue Lu, Shuang Zhang, Yuezhen Huang, Jun Qian, Baochun Tan, Xueshen Qian, Jia Zhuang, Xihong Zou, Yanfen Li & Fuhua Yan
Article: 2126272
Published online: 29 Sep 2022
AbstractforPeriodontitis-related salivary microbiota aggravates Alzheimer’s disease via gut-brain axis crosstalk | Full Text | References | PDF (5.7 MB) | EPUB | Supplemental
  • 5720 Views
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Review

Review
Biofilm-based delivery approaches and specific enrichment strategies of probiotics in the human gut
Jie Gao, Faizan Ahmed Sadiq, Yixin Zheng, Jinrong Zhao, Guoqing He & Yaxin Sang
Article: 2126274
Published online: 29 Sep 2022
AbstractforBiofilm-based delivery approaches and specific enrichment strategies of probiotics in the human gut | Full Text | References | PDF (12.1 MB) | EPUB
  • 5236 Views
  • 5 CrossRef citations
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Research Paper

Article
Carbohydrate utilization by the gut microbiome determines host health responsiveness to whole grain type and processing methods
Caroline Smith, Mallory J. Van Haute, Yibo Xian, Rafael R. Segura Munoz, Sujun Liu, Robert J. Schmaltz, Amanda E. Ramer-Tait & Devin J. Rose
Article: 2126275
Published online: 21 Sep 2022
AbstractforCarbohydrate utilization by the gut microbiome determines host health responsiveness to whole grain type and processing methods | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 2562 Views
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Article
Lactic acid bacteria and bifidobacteria deliberately introduced into the agro-food chain do not significantly increase the antimicrobial resistance gene pool
Vita Rozman, Petra Mohar Lorbeg, Primož Treven, Tomaž Accetto, Majda Golob, Irena Zdovc & Bojana Bogovič Matijašić
Article: 2127438
Published online: 28 Sep 2022
AbstractforLactic acid bacteria and bifidobacteria deliberately introduced into the agro-food chain do not significantly increase the antimicrobial resistance gene pool | Full Text | References | PDF (5.2 MB) | EPUB | Supplemental
  • 2280 Views
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Article
Epigenetic master regulators HDAC1 and HDAC5 control pathobiont Enterobacteria colonization in ileal mucosa of Crohn’s disease patients
Mélissa Chervy, Adeline Sivignon, Flavie Dambrine, Anthony Buisson, Pierre Sauvanet, Catherine Godfraind, Matthieu Allez, Lionel Le Bourhis, The Remind Group, Nicolas Barnich & Jérémy Denizot
Article: 2127444
Published online: 29 Sep 2022
AbstractforEpigenetic master regulators HDAC1 and HDAC5 control pathobiont Enterobacteria colonization in ileal mucosa of Crohn’s disease patients | Full Text | References | PDF (7.5 MB) | EPUB | Supplemental
  • 1766 Views
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Article
Dietary Isoflavones Alter Gut Microbiota and Lipopolysaccharide Biosynthesis to Reduce Inflammation
Sudeep Ghimire, Nicole M. Cady, Peter Lehman, Stephanie R. Peterson, Shailesh K. Shahi, Faraz Rashid, Shailendra Giri & Ashutosh K. Mangalam
Article: 2127446
Published online: 30 Sep 2022
AbstractforDietary Isoflavones Alter Gut Microbiota and Lipopolysaccharide Biosynthesis to Reduce Inflammation | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
  • 3800 Views
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Article
Myeloid-derived suppressor cells prevent disruption of the gut barrier, preserve microbiota composition, and potentiate immunoregulatory pathways in a rat model of experimental autoimmune encephalomyelitis
Dušan Radojević, Marina Bekić, Alisa Gruden-Movsesijan, Nataša Ilić, Miroslav Dinić, Aleksandar Bisenić, Nataša Golić, Dragana Vučević, Jelena Đokić & Sergej Tomić
Article: 2127455
Published online: 02 Oct 2022
AbstractforMyeloid-derived suppressor cells prevent disruption of the gut barrier, preserve microbiota composition, and potentiate immunoregulatory pathways in a rat model of experimental autoimmune encephalomyelitis | Full Text | References | PDF (5.3 MB) | EPUB | Supplemental
  • 2528 Views
  • 4 CrossRef citations
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Article
Bifidobacterium spp. and their metabolite lactate protect against acute pancreatitis via inhibition of pancreatic and systemic inflammatory responses
Han Li, Jinyan Xie, Xiuliu Guo, Guilian Yang, Bin Cai, Jingtianyi Liu, Mengjia Yue, Yixin Tang, Gan Wang, Shuxian Chen, Jialin Guo, Xuchen Qi, Donghai Wang, Huijun Zheng, Wei Liu, Hong Yu, Chunfeng Wang, Shu Jeffrey Zhu & Feng Guo
Article: 2127456
Published online: 04 Oct 2022
AbstractforBifidobacterium spp. and their metabolite lactate protect against acute pancreatitis via inhibition of pancreatic and systemic inflammatory responses | Full Text | References | PDF (10.6 MB) | EPUB | Supplemental
  • 5450 Views
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Article
Microcin MccI47 selectively inhibits enteric bacteria and reduces carbapenem-resistant Klebsiella pneumoniae colonization in vivo when administered via an engineered live biotherapeutic
Benedikt M. Mortzfeld, Jacob D. Palmer, Shakti K. Bhattarai, Haley L. Dupre, Regino Mercado-Lubio, Mark W. Silby, Corinna Bang, Beth A. McCormick & Vanni Bucci
Article: 2127633
Published online: 29 Sep 2022
AbstractforMicrocin MccI47 selectively inhibits enteric bacteria and reduces carbapenem-resistant Klebsiella pneumoniae colonization in vivo when administered via an engineered live biotherapeutic | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 2684 Views
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Article
Antibiotics and probiotics impact gut antimicrobial resistance gene reservoir in COVID-19 patients
Qi Su, Qin Liu, Lin Zhang, Zhilu Xu, Chenyu Liu, Wenqi Lu, Jessica YL Ching, Amy Li, Joyce Wing Yan Mak, Grace Chung Yan Lui, Susanna So Shan Ng, Kai Ming Chow, David SC Hui, Paul KS Chan, Francis Ka Leung Chan & Siew C Ng
Article: 2128603
Published online: 06 Oct 2022
AbstractforAntibiotics and probiotics impact gut antimicrobial resistance gene reservoir in COVID-19 patients | Full Text | References | PDF (2 MB) | EPUB | Supplemental
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Article
Extracellular vesicle miRNAs promote the intestinal microenvironment by interacting with microbes in colitis
Qichen Shen, Zhuizui Huang, Lingyan Ma, Jiachen Yao, Ting Luo, Yao Zhao, Yingping Xiao & Yuanxiang Jin
Article: 2128604
Published online: 29 Sep 2022
AbstractforExtracellular vesicle miRNAs promote the intestinal microenvironment by interacting with microbes in colitis | Full Text | References | PDF (12.6 MB) | EPUB | Supplemental
  • 4637 Views
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Article
Gut bacterial aromatic amine production: aromatic amino acid decarboxylase and its effects on peripheral serotonin production
Yuta Sugiyama, Yumiko Mori, Misaki Nara, Yusuke Kotani, Emiko Nagai, Hiroki Kawada, Mayu Kitamura, Rika Hirano, Hiromi Shimokawa, Akira Nakagawa, Hiromichi Minami, Aina Gotoh, Mikiyasu Sakanaka, Noriho Iida, Takashi Koyanagi, Takane Katayama, Shigefumi Okamoto & Shin Kurihara
Article: 2128605
Published online: 10 Oct 2022
AbstractforGut bacterial aromatic amine production: aromatic amino acid decarboxylase and its effects on peripheral serotonin production | Full Text | References | PDF (1,001.2 KB) | EPUB | Supplemental
  • 5125 Views
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Article
Helicobacter pylori employs a general protein glycosylation system for the modification of outer membrane adhesins
Kai-Wen Teng, Kai-Siang Hsieh, Ji-Shiuan Hung, Chun-Jen Wang, En-Chi Liao, Pei-Chun Chen, Ying-Hsuan Lin, Deng-Chyang Wu, Chun-Hung Lin, Wen-Ching Wang, Hong-Lin Chan, Shau-Ku Huang & Mou-Chieh Kao
Article: 2130650
Published online: 07 Oct 2022
AbstractforHelicobacter pylori employs a general protein glycosylation system for the modification of outer membrane adhesins | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
  • 2216 Views
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Article
EspH interacts with the host active Bcr related (ABR) protein to suppress RhoGTPases
Rachana Pattani Ramachandran, Ipsita Nandi, Nir Haritan, Efrat Zlotkin-Rivkin, Yael Keren, Tsafi Danieli, Mario Lebendiker, Naomi Melamed-Book, William Breuer, Dana Reichmann & Benjamin Aroeti
Article: 2130657
Published online: 11 Oct 2022
AbstractforEspH interacts with the host active Bcr related (ABR) protein to suppress RhoGTPases | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
  • 1671 Views
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Article
The duodenal mucosa associated microbiome, visceral sensory function, immune activation and psychological comorbidities in functional gastrointestinal disorders with and without self-reported non-celiac wheat sensitivity
Ayesha Shah, Seungha Kang, Nicholas J Talley, Anh Do, Marjorie M Walker, Erin R Shanahan, Natasha A Koloski, Michael P Jones, Simon Keely, Mark Morrison & Gerald J Holtmann
Article: 2132078
Published online: 27 Oct 2022
AbstractforThe duodenal mucosa associated microbiome, visceral sensory function, immune activation and psychological comorbidities in functional gastrointestinal disorders with and without self-reported non-celiac wheat sensitivity | Full Text | References | PDF (5.3 MB) | EPUB | Supplemental
  • 2277 Views
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Article
Formation of secondary allo-bile acids by novel enzymes from gut Firmicutes
Jae Won Lee, Elise S. Cowley, Patricia G. Wolf, Heidi L. Doden, Tsuyoshi Murai, Kelly Yovani Olivos Caicedo, Lindsey K. Ly, Furong Sun, Hajime Takei, Hiroshi Nittono, Steven L. Daniel, Isaac Cann, H. Rex Gaskins, Karthik Anantharaman, João M. P. Alves & Jason M. Ridlon
Article: 2132903
Published online: 07 Nov 2022
AbstractforFormation of secondary allo-bile acids by novel enzymes from gut Firmicutes | Full Text | References | PDF (8.4 MB) | EPUB | Supplemental
  • 3417 Views
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Review

Review
Gut bacterial extracellular vesicles: important players in regulating intestinal microenvironment
Xiao Liang, Nini Dai, Kangliang Sheng, Hengqian Lu, Jingmin Wang, Liping Chen & Yongzhong Wang
Article: 2134689
Published online: 15 Oct 2022
AbstractforGut bacterial extracellular vesicles: important players in regulating intestinal microenvironment | Full Text | References | PDF (5.6 MB) | EPUB
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Research Paper

Article
Functional profile of host microbiome indicates Clostridioides difficile infection
Etienne Nzabarushimana & Haixu Tang
Article: 2135963
Published online: 26 Oct 2022
AbstractforFunctional profile of host microbiome indicates Clostridioides difficile infection | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 1597 Views
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Article
TssI2-TsiI2 of Vibrio fluvialis VflT6SS2 delivers pesticin domain-containing periplasmic toxin and cognate immunity that modulates bacterial competitiveness
Yuanming Huang, Yu Han, Zhenpeng Li, Xiaorui Li, Zhe Li, Ping Liu, Xiaoshu Liu, Qian Cheng, Fenxia Fan, Biao Kan & Weili Liang
Article: 2136460
Published online: 26 Oct 2022
AbstractforTssI2-TsiI2 of Vibrio fluvialis VflT6SS2 delivers pesticin domain-containing periplasmic toxin and cognate immunity that modulates bacterial competitiveness | Full Text | References | PDF (9.4 MB) | EPUB | Supplemental
  • 1316 Views
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Article
Lactiplantibacillus plantarum 299v supplementation modulates β-cell ER stress and antioxidative defense pathways and prevents type 1 diabetes in gluten-free BioBreeding rats
Pinar Sargin, Mark F. Roethle, Shuang Jia, Tarun Pant, Ashley E. Ciecko, Samantha N. Atkinson, Nita H. Salzman, Ru-Jeng Teng, Yi-Guang Chen, Susanne M. Cabrera & Martin J. Hessner
Article: 2136467
Published online: 19 Oct 2022
AbstractforLactiplantibacillus plantarum 299v supplementation modulates β-cell ER stress and antioxidative defense pathways and prevents type 1 diabetes in gluten-free BioBreeding rats | Full Text | References | PDF (5 MB) | EPUB | Supplemental
  • 2355 Views
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Article
An observational investigation of the faecal microbiota and metabonome of gastrostomy fed children, on blended and formula diets
Julian R. Marchesi, Sophie Allen, Emma Scott, Huw Jenkins, Claire Sadlier & Sian Thomas
Article: 2138661
Published online: 25 Oct 2022
AbstractforAn observational investigation of the faecal microbiota and metabonome of gastrostomy fed children, on blended and formula diets | Full Text | References | PDF (531.7 KB) | EPUB | Supplemental
  • 1301 Views
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Article
Artificial intelligence-based personalized diet: A pilot clinical study for irritable bowel syndrome
Tarkan Karakan, Aycan Gundogdu, Hakan Alagözlü, Nergiz Ekmen, Seckin Ozgul, Varol Tunali, Mehmet Hora, Damla Beyazgul & O. Ufuk Nalbantoglu
Article: 2138672
Published online: 01 Nov 2022
AbstractforArtificial intelligence-based personalized diet: A pilot clinical study for irritable bowel syndrome | Full Text | References | PDF (6.6 MB) | EPUB | Supplemental
  • 6389 Views
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Article
Indole intercepts the communication between enteropathogenic E. coli and Vibrio cholerae
Orna Gorelik, Alona Rogad, Lara Holoidovsky, Michael M. Meijler & Neta Sal-Man
Article: 2138677
Published online: 03 Nov 2022
AbstractforIndole intercepts the communication between enteropathogenic E. coli and Vibrio cholerae | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 1333 Views
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Article
FABP4 in Paneth cells regulates antimicrobial protein expression to reprogram gut microbiota
Xiaomin Su, Mengli Jin, Chen Xu, Yunhuan Gao, Yazheng Yang, Houbao Qi, Qianjing Zhang, Xiaorong Yang, Wang Ya, Yuan Zhang & Rongcun Yang
Article: 2139978
Published online: 31 Oct 2022
AbstractforFABP4 in Paneth cells regulates antimicrobial protein expression to reprogram gut microbiota | Full Text | References | PDF (16.6 MB) | EPUB | Supplemental
  • 3162 Views
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Article
Integration of stool microbiota, proteome and amino acid profiles to discriminate patients with adenomas and colorectal cancer
Sofie Bosch, Animesh Acharjee, Mohammed Nabil Quraishi, Irene V Bijnsdorp, Patricia Rojas, Abdellatif Bakkali, Erwin EW Jansen, Pieter Stokkers, Johan Kuijvenhoven, Thang V Pham, Andrew D Beggs, Connie R Jimenez, Eduard A Struys, Georgios V Gkoutos, Tim GJ de Meij & Nanne KH de Boer
Article: 2139979
Published online: 11 Nov 2022
AbstractforIntegration of stool microbiota, proteome and amino acid profiles to discriminate patients with adenomas and colorectal cancer | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 3106 Views
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Article
Unique Pakistani gut microbiota highlights population-specific microbiota signatures of type 2 diabetes mellitus
Afshan Saleem, Aamer Ikram, Evgenia Dikareva, Emilia Lahtinen, Dollwin Matharu, Anne-Maria Pajari, Willem M. de Vos, Fariha Hasan, Anne Salonen & Ching Jian
Article: 2142009
Published online: 02 Nov 2022
AbstractforUnique Pakistani gut microbiota highlights population-specific microbiota signatures of type 2 diabetes mellitus | Full Text | References | PDF (7.1 MB) | EPUB | Supplemental
  • 2074 Views
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Article
MlrA, a MerR family regulator in Vibrio cholerae, senses the anaerobic signal in the small intestine of the host to promote bacterial intestinal colonization
Jialin Wu, Yutao Liu, Wendi Li, Fan Li, Ruiying Liu, Hao Sun, Jingliang Qin, Xiaohui Feng, Di Huang & Bin Liu
Article: 2143216
Published online: 11 Nov 2022
AbstractforMlrA, a MerR family regulator in Vibrio cholerae, senses the anaerobic signal in the small intestine of the host to promote bacterial intestinal colonization | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 1275 Views
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Article
Reproducible changes in the anorexia nervosa gut microbiota following inpatient therapy remain distinct from non-eating disorder controls
Farnaz Fouladi, Emily C. Bulik-Sullivan, Elaine M. Glenny, Laura M. Thornton, Kylie K. Reed, Stephanie Thomas, Susan Kleiman, Ashlie Watters, Judy Oakes, Eun-Young Huh, Quyen Tang, Jintong Liu, Zorka Djukic, Lauren Harper, Yesel Trillo-Ordoñez, Shan Sun, Ivory Blakely, Philip S. Mehler, Anthony A. Fodor, Lisa M. Tarantino, Cynthia M. Bulik & Ian M. Carroll
Article: 2143217
Published online: 18 Nov 2022
AbstractforReproducible changes in the anorexia nervosa gut microbiota following inpatient therapy remain distinct from non-eating disorder controls | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 2462 Views
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Article
Atypical enteropathogenic E. coli are associated with disease activity in ulcerative colitis
Maximilian Baumgartner, Rebecca Zirnbauer, Sabine Schlager, Daniel Mertens, Nikolaus Gasche, Barbara Sladek, Craig Herbold, Olga Bochkareva, Vera Emelianenko, Harald Vogelsang, Michaela Lang, Anton Klotz, Birgit Moik, Athanasios Makristathis, David Berry, Stefanie Dabsch, Vineeta Khare & Christoph Gasche
Article: 2143218
Published online: 22 Nov 2022
AbstractforAtypical enteropathogenic E. coli are associated with disease activity in ulcerative colitis | Full Text | References | PDF (3.3 MB) | EPUB | Supplemental
  • 2615 Views
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Article
Kidney microbiota dysbiosis contributes to the development of hypertension
Xin-Yu Liu, Jing Li, Yamei Zhang, Luyun Fan, Yanli Xia, Yongyang Wu, Junru Chen, Xinyu Zhao, Qiannan Gao, Bing Xu, Chunlai Nie, Zhengyu Li, Aiping Tong, Wenjie Wang & Jun Cai
Article: 2143220
Published online: 12 Nov 2022
AbstractforKidney microbiota dysbiosis contributes to the development of hypertension | Full Text | References | PDF (6.9 MB) | EPUB | Supplemental
  • 3934 Views
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Article
Nucleotide binding as an allosteric regulatory mechanism for Akkermansia muciniphila β-N-acetylhexosaminidase Am2136
Chang-Cheng Li, Huan Yi, Yan-Mei Wang, Xin-Yue Tang, Yi-Bo Zhu, Ying-Jie Song, Ning-Lin Zhao, Qin Huang, Xing-Yu Mou, Gui-Hua Luo, Tong-Gen Liu, Gang-Long Yang, Yu-Jiao Zeng, Li-Jie Wang, Hong Tang, Gang Fan & Rui Bao
Article: 2143221
Published online: 17 Nov 2022
AbstractforNucleotide binding as an allosteric regulatory mechanism for Akkermansia muciniphila β-N-acetylhexosaminidase Am2136 | Full Text | References | PDF (4.3 MB) | EPUB | Supplemental
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Brief Report

Brief Report
A metabolically engineered bacterium controls autoimmunity and inflammation by remodeling the pro-inflammatory microenvironment
Jugal Kishore Das, Fengguang Guo, Carrie Hunt, Shelby Steinmeyer, Julia A Plocica, Koichi S. Kobayashi, Yufang Ding, Arul Jayaraman, Thomas A Ficht, Robert C. Alaniz, Paul de Figueiredo & Jianxun Song
Article: 2143222
Published online: 20 Nov 2022
AbstractforA metabolically engineered bacterium controls autoimmunity and inflammation by remodeling the pro-inflammatory microenvironment | Full Text | References | PDF (5.3 MB) | EPUB | Supplemental
  • 2051 Views
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Research Paper

Article
Enteropathogenic Escherichia coli regulates host-cell mitochondrial morphology
Jennifer Lising Roxas, Shylaja Ramamurthy, Katie Cocchi, Ilga Rutins, Anusha Harishankar, Al Agellon, John Scott Wilbur, Gresa Sylejmani, Gayatri Vedantam & V.K. Viswanathan
Article: 2143224
Published online: 08 Dec 2022
AbstractforEnteropathogenic Escherichia coli regulates host-cell mitochondrial morphology | Full Text | References | PDF (21.3 MB) | EPUB | Supplemental
  • 1791 Views
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Article
Morphine mediated neutrophil infiltration in intestinal tissue play essential role in histological damage and microbial dysbiosis
Richa Jalodia, Udhghatri Kolli, Regina Gonzalez Braniff, Junyi Tao, Yaa Fosuah Abu, Irina Chupikova, Shamsudheen Moidunny, Sundaram Ramakrishnan & Sabita Roy
Article: 2143225
Published online: 21 Nov 2022
AbstractforMorphine mediated neutrophil infiltration in intestinal tissue play essential role in histological damage and microbial dysbiosis | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 1618 Views
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Article
Lactobacillus johnsonii alleviates colitis by TLR1/2-STAT3 mediated CD206+ macrophagesIL-10 activation
Ding-Jia-Cheng Jia, Qi-Wen Wang, Ying-Ying Hu, Jia-Min He, Qi-Wei Ge, Ya-Dong Qi, Lu-Yi Chen, Ying Zhang, Li-Na Fan, Yi-Feng Lin, Yong Sun, Yao Jiang, Lan Wang, Yan-Fei Fang, Hui-Qin He, Xiong-E Pi, Wei Liu, Shu-Jie Chen & Liang-Jing Wang
Article: 2145843
Published online: 18 Nov 2022
AbstractforLactobacillus johnsonii alleviates colitis by TLR1/2-STAT3 mediated CD206+ macrophagesIL-10 activation | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 6499 Views
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Article
Host acid signal controls Salmonella flagella biogenesis through CadC-YdiV axis
Weiwei Wang, Yingying Yue, Min Zhang, Nannan Song, Haihong Jia, Yuanji Dai, Fengyu Zhang, Cuiling Li & Bingqing Li
Article: 2146979
Published online: 01 Dec 2022
AbstractforHost acid signal controls Salmonella flagella biogenesis through CadC-YdiV axis | Full Text | References | PDF (4.7 MB) | EPUB | Supplemental
  • 1172 Views
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Brief Report

Brief Report
Gut microbiota composition as a candidate risk factor for dimethyl fumarate-induced lymphopenia in multiple sclerosis
Martin Diebold, Marco Meola, Srinithi Purushothaman, Lena K Siewert, Elisabeth Pössnecker, Tim Roloff, Raija LP Lindberg, Jens Kuhle, Ludwig Kappos, Tobias Derfuss, Adrian Egli & Anne-Katrin Pröbstel
Article: 2147055
Published online: 18 Nov 2022
AbstractforGut microbiota composition as a candidate risk factor for dimethyl fumarate-induced lymphopenia in multiple sclerosis | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 2891 Views
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Research Paper

Article
Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing data
Berenike Kircher, Sabrina Woltemate, Frank Gutzki, Dirk Schlüter, Robert Geffers, Heike Bähre & Marius Vital
Article: 2149019
Published online: 23 Nov 2022
AbstractforPredicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing data | Full Text | References | PDF (5.1 MB) | EPUB | Supplemental
  • 4873 Views
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Article
Dysbiotic but nonpathogenic shift in the fecal mycobiota of patients with rheumatoid arthritis
Eun Ha Lee, Hyun Kim, Jung Hee Koh, Kwang Hyun Cha, Kiseok Keith Lee, Wan-Uk Kim, Cheol-Ho Pan & Yong-Hwan Lee
Article: 2149020
Published online: 06 Dec 2022
AbstractforDysbiotic but nonpathogenic shift in the fecal mycobiota of patients with rheumatoid arthritis | Full Text | References | PDF (3.3 MB) | EPUB | Supplemental
  • 1890 Views
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Brief Report

Brief Report
Microbial bile salt hydrolase activity influences gene expression profiles and gastrointestinal maturation in infant mice
María A. Núñez-Sánchez, Florence M. Herisson, Jonathan M. Keane, Natalia García-González, Valerio Rossini, Jorge Pinhiero, Jack Daly, Milán Bustamante-Garrido, Cara M. Hueston, Shriram Patel, Nuria Canela, Pol Herrero, Marcus J. Claesson, Silvia Melgar, Ken Nally, Noel M. Caplice & Cormac G.M. Gahan
Article: 2149023
Published online: 24 Nov 2022
AbstractforMicrobial bile salt hydrolase activity influences gene expression profiles and gastrointestinal maturation in infant mice | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 2115 Views
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Addendum

Article Commentary
Diet standardization reduces intra-individual microbiome variation
Clara Delaroque, Gary D. Wu, Charlene Compher, Josephine Ni, Lindsey Albenberg, Qing Liu, Yuan Tian, Andrew D. Patterson, James D. Lewis, Andrew T. Gewirtz & Benoit Chassaing
Article: 2149047
Published online: 25 Nov 2022
AbstractforDiet standardization reduces intra-individual microbiome variation | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
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Review

Review
The potential role of adherence factors in probiotic function in the gastrointestinal tract of adults and pediatrics: a narrative review of experimental and human studies
Frida Gorreja & W. Allan Walker
Article: 2149214
Published online: 05 Dec 2022
AbstractforThe potential role of adherence factors in probiotic function in the gastrointestinal tract of adults and pediatrics: a narrative review of experimental and human studies | Full Text | References | PDF (3.1 MB) | EPUB
  • 4154 Views
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Research Paper

Article
Facilitating a high-quality dietary pattern induces shared microbial responses linking diet quality, blood pressure, and microbial sterol metabolism in caregiver-child dyads
Emily B. Hill, Li Chen, Michael T. Bailey, Amrik Singh Khalsa, Ross Maltz, Kelly Kelleher, Colleen K. Spees, Jiangjiang Zhu & Brett R. Loman
Article: 2150502
Published online: 01 Dec 2022
AbstractforFacilitating a high-quality dietary pattern induces shared microbial responses linking diet quality, blood pressure, and microbial sterol metabolism in caregiver-child dyads | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 2429 Views
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Retraction

Retraction
Statement of Retraction: Statins significantly repress rotavirus replication through downregulation of cholesterol synthesis
Article: 2151146
Published online: 23 Nov 2022
CitationforStatement of Retraction: Statins significantly repress rotavirus replication through downregulation of cholesterol synthesis | Full Text | PDF (117.2 KB) | EPUB
  • 460 Views
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Research Paper

Article
Genomic diversity of Helicobacter pylori populations from different regions of the human stomach
Daniel James Wilkinson, Benjamin Dickins, Karen Robinson & Jody Anne Winter
Article: 2152306
Published online: 05 Dec 2022
AbstractforGenomic diversity of Helicobacter pylori populations from different regions of the human stomach | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 2105 Views
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Article
Prebiotic oligofructose protects against high-fat diet-induced obesity by changing the gut microbiota, intestinal mucus production, glycosylation and secretion
Paola Paone, Francesco Suriano, Ching Jian, Katri Korpela, Nathalie M. Delzenne, Matthias Van Hul, Anne Salonen & Patrice D. Cani
Article: 2152307
Published online: 30 Nov 2022
AbstractforPrebiotic oligofructose protects against high-fat diet-induced obesity by changing the gut microbiota, intestinal mucus production, glycosylation and secretion | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 6403 Views
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Article
Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assembly
Sagori Mukhopadhyay, Jung-Jin Lee, Erica Hartman, Emily Woodford, Miren B. Dhudasia, Lisa M. Mattei, Scott G. Daniel, Kelly C. Wade, Mark A. Underwood & Kyle Bittinger
Article: 2154091
Published online: 06 Dec 2022
AbstractforPreterm infants at low risk for early-onset sepsis differ in early fecal microbiome assembly | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 1404 Views
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Review

Review
Stool multi-omics for the study of host–microbe interactions in inflammatory bowel disease
Consuelo Sauceda, Charlie Bayne, Khadijeh Sudqi, Antonio Gonzalez, Parambir S. Dulai, Rob Knight, David J. Gonzalez & Carlos G. Gonzalez
Article: 2154092
Published online: 11 Dec 2022
AbstractforStool multi-omics for the study of host–microbe interactions in inflammatory bowel disease | Full Text | References | PDF (896.6 KB) | EPUB
  • 4461 Views
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Review
From intestinal colonization to systemic infections: Candida albicans translocation and dissemination
Jakob L. Sprague, Lydia Kasper & Bernhard Hube
Article: 2154548
Published online: 11 Dec 2022
AbstractforFrom intestinal colonization to systemic infections: Candida albicans translocation and dissemination | Full Text | References | PDF (965.5 KB) | EPUB
  • 3390 Views
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Brief Report

Brief Report
Microbial vitamin production mediates dietary effects on diabetic risk
Daoming Wang, Van T. Pham, Robert E. Steinert, Alexandra Zhernakova & Jingyuan Fu
Article: 2154550
Published online: 06 Dec 2022
AbstractforMicrobial vitamin production mediates dietary effects on diabetic risk | Full Text | References | PDF (5.2 MB) | EPUB | Supplemental
  • 2718 Views
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