RNA Biology, Volume 18, Issue sup2 (2021)

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RNA Biology, Volume 18, Issue sup2 (2021)

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Review

Review
N6-methyladenosine RNA modification and its interaction with regulatory non-coding RNAs in colorectal cancer
Yiling Ge, Tong Liu, Chuntao Wang, Yanqiu Zhang, Siyi Xu, Yiyi Ren, Yanlu Feng, Lihong Yin, Yuepu Pu & Geyu Liang
Pages: 551-561
Published online: 21 Oct 2021
AbstractforN6-methyladenosine RNA modification and its interaction with regulatory non-coding RNAs in colorectal cancer | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
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Review
Structural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins
Lingguang Yang, Yi Zhang, Peipei Yin & Yue Feng
Pages: 562-573
Published online: 04 Oct 2021
AbstractforStructural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins | Full Text | References | PDF (3.4 MB) | EPUB
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Review
Alu RNA and their roles in human disease states
Daniel Gussakovsky & Sean A. McKenna
Pages: 574-585
Published online: 21 Oct 2021
AbstractforAlu RNA and their roles in human disease states | Full Text | References | PDF (911.7 KB) | EPUB
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Review
Up–to–date on the evidence linking miRNA-related epitranscriptomic modifications and disease settings. Can these modifications affect cross-kingdom regulation?
João Tomé-Carneiro, María-Carmen López de Las Hazas, Hatim Boughanem, Yvonne Böttcher, Akin Cayir, Manuel Macias González & Alberto Dávalos
Pages: 586-599
Published online: 29 Nov 2021
AbstractforUp–to–date on the evidence linking miRNA-related epitranscriptomic modifications and disease settings. Can these modifications affect cross-kingdom regulation? | Full Text | References | PDF (515.6 KB) | EPUB
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Brief Communication

Rapid Communication
GlyinsRNA: a webserver for predicting glycosylation sites on small RNAs
Chunmei Cui, Xiaobin Wu & Yuan Zhou
Pages: 600-603
Published online: 24 Sep 2021
AbstractforGlyinsRNA: a webserver for predicting glycosylation sites on small RNAs | Full Text | References | PDF (633.6 KB) | EPUB | Supplemental
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Article
Identification and characterization of novel infection associated transcripts in macrophages
Prabhakar Arumugam, Mohit Singla, Rakesh Lodha & Vivek Rao
Pages: 604-611
Published online: 08 Nov 2021
AbstractforIdentification and characterization of novel infection associated transcripts in macrophages | Full Text | References | PDF (1.3 MB) | EPUB
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Rapid Communication
Poly C Binding Protein 2 dependent nuclear retention of the utrophin-A mRNA in C2C12 cells
Gargi Ghosh, Satyabrata Samui, Santanu Das, Vandana Singh, Doel Pal, Subhanwita Das, Jishu Naskar, Soumya Sinha Roy & Utpal Basu
Pages: 612-622
Published online: 14 Dec 2021
AbstractforPoly C Binding Protein 2 dependent nuclear retention of the utrophin-A mRNA in C2C12 cells | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
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Technical Paper

Reproducible and efficient new method of RNA 3’-end labelling by CutA nucleotidyltransferase-mediated CC-tailing
Rafal Tomecki, Kamil Kobylecki, Karolina Drazkowska, Malwina Hyjek-Skladanowska & Andrzej Dziembowski
Pages: 623-639
Published online: 12 Nov 2021
AbstractforReproducible and efficient new method of RNA 3’-end labelling by CutA nucleotidyltransferase-mediated CC-tailing | Full Text | References | PDF (3.4 MB) | EPUB | Supplemental
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Research Paper

Article
Spatiotemporal expression of long noncoding RNA Moshe modulates heart cell lineage commitment
Na-Jung Kim, Kang-Hoon Lee, YeonSung Son, A-Reum Nam, Eun-Hye Moon, Jung-Hoon Pyun, Jinyoung Park, Jong-Sun Kang, Young Jae Lee & Je-Yoel Cho
Pages: 640-654
Published online: 10 Nov 2021
AbstractforSpatiotemporal expression of long noncoding RNA Moshe modulates heart cell lineage commitment | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
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Open Access
Article
Integrated multi-omics reveals common properties underlying stress granule and P-body formation
Christopher J. Kershaw, Michael G. Nelson, Jennifer Lui, Christian P. Bates, Martin D. Jennings, Simon J. Hubbard, Mark P. Ashe & Chris M. Grant
Pages: 655-673
Published online: 21 Oct 2021
AbstractforIntegrated multi-omics reveals common properties underlying stress granule and P-body formation | Full Text | References | PDF (4.4 MB) | EPUB | Supplemental
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Article
Circular versus linear RNA topology: different modes of RNA–RNA interactions in vitro and in human cells
Sonja Petkovic, Sarah Graff, Nina Feller, Julia Berghaus, Vanessa-Patricia Ruppert, Jasmin Dülfer & Georg Sczakiel
Pages: 674-683
Published online: 28 Nov 2021
AbstractforCircular versus linear RNA topology: different modes of RNA–RNA interactions in vitro and in human cells | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
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Article
Prokaryotic rRNA-mRNA interactions are involved in all translation steps and shape bacterial transcripts
Shir Bahiri Elitzur, Rachel Cohen-Kupiec, Dana Yacobi, Larissa Fine, Boaz Apt, Alon Diament & Tamir Tuller
Pages: 684-698
Published online: 29 Sep 2021
AbstractforProkaryotic rRNA-mRNA interactions are involved in all translation steps and shape bacterial transcripts | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 1093 Views
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Article
Inactivation of the riboswitch-controlled GMP synthase GuaA in Clostridioides difficile is associated with severe growth defects and poor infectivity in a mouse model of infection
Erich Smith-Peter, David Lalonde Séguin, Émilie St-Pierre, Ognjen Sekulovic, Simon Jeanneau, Cédrick Tremblay-Tétreault, Anne-Marie Lamontagne, Pierre-Étienne Jacques, Daniel A. Lafontaine & Louis-Charles Fortier
Pages: 699-710
Published online: 06 Oct 2021
AbstractforInactivation of the riboswitch-controlled GMP synthase GuaA in Clostridioides difficile is associated with severe growth defects and poor infectivity in a mouse model of infection | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 1075 Views
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Article
mRNA m5C controls adipogenesis by promoting CDKN1A mRNA export and translation
Youhua Liu, Yuanling Zhao, Ruifan Wu, Yushi Chen, Wei Chen, Yuxi Liu, Yaojun Luo, Chaoqun Huang, Botao Zeng, Xing Liao, Guanqun Guo, Yizhen Wang & Xinxia Wang
Pages: 711-721
Published online: 27 Sep 2021
AbstractformRNA m5C controls adipogenesis by promoting CDKN1A mRNA export and translation | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
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Article
Inhibition of CDK9 activity compromises global splicing in prostate cancer cells
Qiang Hu, Ninu Poulose, Samuel Girmay, Alma Helevä, Dimitrios Doultsinos, Aishwarya Gondane, Rebecca E Steele, Xiaozhuo Liu, Massimo Loda, Song Liu, Dean G. Tang, Ian G Mills & Harri M Itkonen
Pages: 722-729
Published online: 30 Sep 2021
AbstractforInhibition of CDK9 activity compromises global splicing in prostate cancer cells | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 2191 Views
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Article
Selectivity of Exportin 5 binding to human precursor microRNAs
Xiaoxiao Zhang, Fanzou Liu, Fanming Yang, Zhen Meng & Yan Zeng
Pages: 730-737
Published online: 30 Sep 2021
AbstractforSelectivity of Exportin 5 binding to human precursor microRNAs | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 1396 Views
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Article
RR3DD: an RNA global structure-based RNA three-dimensional structural classification database
Xu Hong, Jinfang Zheng, Juan Xie, Xiaoxue Tong, Xudong Liu, Qi Song, Sen Liu & Shiyong Liu
Pages: 738-746
Published online: 18 Oct 2021
AbstractforRR3DD: an RNA global structure-based RNA three-dimensional structural classification database | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
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Research paper

Article
A novel panel of blood-based microRNAs capable of discrimination between benign breast disease and breast cancer at early stages
Hanieh Sadeghi, Aryan Kamal, Marzieh Ahmadi, Hadi Najafi, Ali Sharifi Zarchi, Peyman Haddad, Bahareh Shayestehpour, Leila Kamkar, Masoumeh Salamati, Loabat Geranpayeh, Marzieh Lashkari & Mehdi Totonchi
Pages: 747-756
Published online: 18 Nov 2021
AbstractforA novel panel of blood-based microRNAs capable of discrimination between benign breast disease and breast cancer at early stages | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
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Research Paper

Article
Two Piwis with Ago-like functions silence somatic genes at the chromatin level
Franziska Drews, Sivarajan Karunanithi, Ulrike Götz, Simone Marker, Raphael deWijn, Marcello Pirritano, Angela M. Rodrigues-Viana, Martin Jung, Gilles Gasparoni, Marcel H. Schulz & Martin Simon
Pages: 757-769
Published online: 18 Oct 2021
AbstractforTwo Piwis with Ago-like functions silence somatic genes at the chromatin level | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 1056 Views
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Article
The distinct RNA-interaction modes of a small ZnF domain underlay TUT4(7) diverse action in miRNA regulation
Belén Chaves-Arquero, Katherine M. Collins, Evangelos Christodoulou, Giuseppe Nicastro, Stephen R. Martin & Andres Ramos
Pages: 770-781
Published online: 01 Nov 2021
AbstractforThe distinct RNA-interaction modes of a small ZnF domain underlay TUT4(7) diverse action in miRNA regulation | Full Text | References | PDF (2.9 MB) | EPUB | Supplemental
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Open Access
Article
Conditional depletion of transcriptional kinases Ctk1 and Bur1 and effects on co-transcriptional spliceosome assembly and pre-mRNA splicing
Isabella E. Maudlin & Jean D. Beggs
Pages: 782-793
Published online: 27 Oct 2021
AbstractforConditional depletion of transcriptional kinases Ctk1 and Bur1 and effects on co-transcriptional spliceosome assembly and pre-mRNA splicing | Full Text | References | PDF (686.8 KB) | EPUB | Supplemental
  • 1287 Views
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Article
Unique features of the m6A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoides Linn.)
Guoyun Zhang, Zhongrui Lv, Songfeng Diao, Hong Liu, Aiguo Duan, Caiyun He & Jianguo Zhang
Pages: 794-803
Published online: 21 Nov 2021
AbstractforUnique features of the m6A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoides Linn.) | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 1700 Views
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Article
Nsp1 of SARS-CoV-2 stimulates host translation termination
Alexey Shuvalov, Ekaterina Shuvalova, Nikita Biziaev, Elizaveta Sokolova, Konstantin Evmenov, Nikolay Pustogarov, Aleksandra Arnautova, Vera Matrosova, Tatiana Egorova & Elena Alkalaeva
Pages: 804-817
Published online: 18 Nov 2021
AbstractforNsp1 of SARS-CoV-2 stimulates host translation termination | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 2153 Views
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Article
cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2ʹ,3ʹ cyclic phosphates and 5ʹ hydroxyl ends
V. Janett Olzog, Christiane Gärtner, Peter F. Stadler, Jörg Fallmann & Christina E. Weinberg
Pages: 818-831
Published online: 14 Dec 2021
AbstractforcyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2ʹ,3ʹ cyclic phosphates and 5ʹ hydroxyl ends | Full Text | References | PDF (1.1 MB) | EPUB | Supplemental
  • 1996 Views
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Open Access
Article
Distinct small non-coding RNA landscape in the axons and released extracellular vesicles of developing primary cortical neurons and the axoplasm of adult nerves
Raquel Mesquita-Ribeiro, Rafael Sebastián Fort, Alex Rathbone, Joaquina Farias, Cristiano Lucci, Victoria James, Jose Sotelo-Silveira, Maria Ana Duhagon & Federico Dajas-Bailador
Pages: 832-855
Published online: 09 Dec 2021
AbstractforDistinct small non-coding RNA landscape in the axons and released extracellular vesicles of developing primary cortical neurons and the axoplasm of adult nerves | Full Text | References | PDF (4.6 MB) | EPUB | Supplemental
  • 2502 Views
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Article
Maturation of 23S rRNA includes removal of helix H1 in many bacteria
Elan A. Shatoff, Bryan T. Gemler, Ralf Bundschuh & Kurt Fredrick
Pages: 856-865
Published online: 23 Nov 2021
AbstractforMaturation of 23S rRNA includes removal of helix H1 in many bacteria | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 1500 Views
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Article
Nucleo-cytoplasmic RNA distribution responsible for maintaining neuroinflammatory microenvironment
Yuyan Liao, Chenghao Kuang, Zheng Bao, Yijing He, Long Gu, Qianke Tao, Xiancheng Qiu, Ghosh Dipritu, Xi Kong, Lifang Zhang, Jianhua Peng, Yong Jiang & Shigang Yin
Pages: 866-880
Published online: 29 Nov 2021
AbstractforNucleo-cytoplasmic RNA distribution responsible for maintaining neuroinflammatory microenvironment | Full Text | References | PDF (10.1 MB) | EPUB | Supplemental
  • 1611 Views
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